genome.fa.s10.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  131  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43608329--43608701	44	8.6	42	72	11	213	31	20	21	26	1.98
43608552--43608713	87	1.9	87	84	2	218	29	20	24	25	1.99
43608376--43608817	218	2.0	213	79	6	462	31	19	22	26	1.98
43609268--43609297	15	1.9	16	93	6	53	46	46	0	6	1.29
43610132--43610164	16	2.1	16	88	11	50	27	0	6	66	1.15
43611367--43611431	25	2.6	26	85	4	73	32	20	27	20	1.97
43611376--43611433	25	2.3	25	90	0	98	32	15	31	20	1.94
43618121--43618237	27	4.4	25	80	14	121	30	4	1	63	1.24
43618130--43618228	53	1.9	50	85	6	135	29	2	2	66	1.14
43618116--43618256	26	5.3	26	77	10	126	30	5	2	61	1.31
43618137--43618266	53	2.5	52	79	7	129	30	4	2	62	1.28
43618205--43618297	42	2.2	42	81	14	120	27	7	4	60	1.43
43618344--43618972	26	25.4	25	64	19	173	31	4	4	59	1.37
43618326--43618424	52	2.0	51	84	9	132	28	2	5	64	1.25
43618531--43618593	27	2.5	24	79	16	74	30	1	1	66	1.10
43618552--43618625	27	2.6	27	89	6	103	27	5	1	66	1.22
43618608--43618697	42	2.1	42	84	10	112	28	6	5	58	1.46
43618775--43618835	30	2.1	29	87	6	88	26	8	1	63	1.31
43618732--43619014	26	11.7	23	68	19	84	29	4	4	61	1.36
43618124--43618938	199	4.1	197	92	3	1318	31	4	4	59	1.38
43618805--43618896	43	2.1	45	86	11	129	27	5	4	63	1.36
43618848--43618970	48	2.5	49	78	6	142	30	1	6	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43619030--43619069	18	2.2	19	90	4	64	27	0	0	72	0.85
43625634--43625674	15	2.6	16	84	7	57	80	0	19	0	0.71
43625634--43625672	21	1.9	20	89	5	60	82	0	17	0	0.68
43625634--43625673	11	3.8	11	78	21	50	82	0	17	0	0.67
43626162--43626207	23	2.0	23	84	12	60	45	10	6	36	1.65
43626169--43626213	23	2.0	23	82	8	56	40	13	8	37	1.76
43628293--43628507	107	2.0	107	98	0	412	31	15	20	32	1.94
43629789--43629903	46	2.5	45	84	1	140	29	17	23	29	1.97
43629784--43630142	190	1.9	193	81	2	447	33	17	19	29	1.95
43630065--43630161	51	1.9	51	85	8	135	40	16	15	27	1.89
43630393--43630426	14	2.3	15	90	5	52	70	14	2	11	1.27
43631676--43632006	26	12.3	26	71	15	176	29	5	3	61	1.35
43631746--43631868	59	2.1	58	80	6	131	34	4	3	56	1.37
43631902--43631951	16	3.4	16	71	25	56	28	4	0	68	1.08
43631878--43632018	27	5.3	26	76	9	117	27	5	1	65	1.24
43637043--43637074	15	2.1	15	94	0	55	50	0	3	46	1.17
43637135--43637199	23	2.9	22	73	11	60	56	1	0	41	1.08
43640074--43640137	31	2.1	31	91	2	103	57	14	3	25	1.51
43640166--43640213	11	4.4	11	78	0	51	60	8	10	20	1.55
43640167--43640209	22	2.0	22	90	0	68	58	9	11	20	1.61
43640174--43640214	11	3.7	11	80	0	55	56	9	14	19	1.66
43640175--43640222	22	2.2	22	85	7	62	60	6	16	16	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43647493--43647678	72	2.6	72	87	4	275	33	17	19	29	1.95
43647783--43648252	74	6.2	74	78	9	457	27	17	20	34	1.95
43648499--43648532	16	2.2	16	89	5	52	14	14	5	64	1.46
43648549--43648883	74	4.5	75	84	3	410	32	17	20	30	1.95
43649741--43650138	197	2.0	198	96	2	728	32	13	18	35	1.89
43656482--43657244	75	10.0	74	80	10	743	29	17	20	32	1.95
43656685--43657827	149	7.0	161	71	16	571	29	17	19	33	1.95
43656483--43657235	233	3.3	227	81	7	814	29	17	20	32	1.95
43657103--43657239	73	1.9	73	85	0	193	25	18	24	30	1.98
43657488--43657521	16	2.2	16	89	5	52	14	14	5	64	1.46
43657538--43657872	74	4.5	75	84	3	410	32	17	20	30	1.95
43658989--43659050	17	3.7	17	69	2	54	30	1	0	67	1.00
43662869--43663009	47	3.0	47	97	0	264	30	24	7	36	1.84
43667506--43667579	29	2.5	30	82	4	89	47	1	0	51	1.09
43667513--43667572	25	2.4	26	81	10	72	51	1	0	46	1.10
43667509--43667589	29	2.7	29	77	11	83	49	1	0	49	1.08
43670753--43670792	18	2.1	20	86	9	57	32	15	0	52	1.43
43675729--43675821	18	5.2	18	88	0	132	36	17	19	26	1.94
43675730--43675821	36	2.6	36	91	0	148	36	17	18	27	1.93
43681320--43681346	12	2.2	12	100	0	54	51	0	7	40	1.30
43681523--43681565	20	2.1	21	83	12	54	67	2	2	27	1.15
43681605--43681655	23	2.3	23	86	10	70	58	3	0	37	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43682466--43682508	20	2.1	21	83	12	54	67	2	2	27	1.15
43682548--43682598	23	2.3	23	86	10	70	58	3	0	37	1.16
43680867--43682760	943	2.0	946	97	0	3609	56	5	7	30	1.49
43683168--43683210	20	2.1	21	83	12	54	67	2	2	27	1.15
43683250--43683300	23	2.3	23	86	10	70	58	3	0	37	1.16
43682230--43683638	702	2.0	702	100	0	2818	53	7	10	28	1.61
43684613--43684656	17	2.6	17	77	0	52	25	9	38	27	1.86
43687739--43687800	30	2.1	30	100	0	124	29	16	24	30	1.96
43687886--43687926	5	8.2	5	100	0	82	0	19	0	80	0.71
43693403--43693448	24	1.9	24	86	8	67	23	0	4	71	1.03
43700513--43700541	13	2.2	13	100	0	58	55	13	0	31	1.39
43708926--43709428	252	2.0	252	99	0	997	33	20	13	32	1.92
43711111--43711161	18	3.1	18	75	21	65	29	5	1	62	1.29
43711123--43711153	14	2.1	15	94	5	55	32	6	0	61	1.21
43711147--43711199	11	5.1	11	86	11	76	33	0	16	49	1.47
43711154--43711199	20	2.2	21	92	7	85	32	0	19	47	1.50
43711160--43711189	15	2.1	14	93	6	51	33	0	20	46	1.51
43714623--43714653	3	10.7	3	93	6	55	32	0	0	67	0.91
43732041--43732065	12	2.1	12	100	0	50	24	0	8	68	1.16
43732724--43732762	15	2.7	14	81	18	53	43	0	0	56	0.99
43739894--43739944	20	2.7	18	78	9	57	41	1	1	54	1.22
43748816--43748878	30	2.1	30	84	0	81	58	6	9	25	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43750083--43750136	26	2.1	26	96	0	99	51	3	1	42	1.30
43754662--43754801	69	2.0	69	95	0	253	38	5	9	46	1.60
43763160--43763187	5	5.6	5	100	0	56	78	0	0	21	0.75
43763480--43763648	39	4.2	39	81	8	189	56	5	11	26	1.55
43763559--43763627	23	3.1	23	68	16	63	57	5	10	26	1.53
43766581--43766688	26	4.2	26	92	0	180	32	6	24	37	1.81
43775981--43776024	21	2.0	22	86	4	63	4	27	4	63	1.33
43776833--43776900	16	4.2	16	96	0	127	25	1	36	36	1.65
43776881--43776971	45	2.0	45	85	6	123	27	5	28	38	1.79
43777136--43777170	18	2.0	17	88	5	52	54	0	0	45	0.99
43777256--43777290	18	2.0	17	88	5	52	54	0	0	45	0.99
43777119--43777536	120	3.4	120	95	2	712	48	4	2	44	1.37
43777376--43777410	18	2.0	17	88	5	52	54	0	0	45	0.99
43778302--43778331	13	2.3	13	100	0	60	60	13	6	20	1.55
43781201--43781242	15	2.8	15	88	0	66	0	33	23	42	1.55
43782444--43782478	3	11.7	3	100	0	70	31	0	0	68	0.90
43782529--43782632	20	5.0	20	66	12	66	25	6	1	65	1.28
43784008--43784049	21	2.0	20	90	4	66	54	21	7	16	1.65
43785632--43785942	154	2.0	154	95	0	559	31	20	13	35	1.91
43788003--43788035	15	2.2	15	94	0	57	42	27	30	0	1.56
43795683--43795790	26	4.2	26	93	0	189	36	24	7	32	1.83
43797434--43797473	21	2.0	21	85	9	57	32	27	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43801720--43801775	26	2.2	26	96	0	103	33	26	8	30	1.87
43802244--43802378	69	2.0	69	86	1	191	38	3	6	51	1.46
43811745--43811814	33	2.2	33	97	2	133	41	5	5	47	1.51
43816919--43816964	23	2.0	23	84	12	60	45	10	6	36	1.65
43816926--43816970	23	2.0	23	82	8	56	40	13	8	37	1.76
43825424--43825483	23	2.5	25	82	17	74	55	0	10	35	1.34
43825419--43825482	26	2.5	27	80	14	73	54	1	9	34	1.42
43825605--43825656	3	17.0	3	78	4	50	57	3	3	34	1.35
43825617--43825656	16	2.6	16	88	4	55	57	5	5	32	1.42
43825485--43826009	262	2.0	262	99	0	1034	57	6	5	30	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172