genome.fa.s10.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  128  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42687712--42687750	20	2.0	19	85	5	51	20	7	0	71	1.10
42691432--42691504	27	2.7	27	84	0	92	30	31	16	21	1.95
42692989--42693032	15	3.0	15	76	6	54	52	0	0	47	1.00
42693012--42693056	19	2.3	20	78	21	51	60	0	0	40	0.97
42692989--42693040	13	3.8	13	74	16	52	53	0	0	46	1.00
42693248--42693309	29	2.1	29	85	5	81	20	24	4	50	1.68
42694243--42694283	17	2.4	17	80	12	57	65	0	0	34	0.93
42694740--42694778	18	2.1	18	86	13	53	61	7	0	30	1.24
42694894--42694937	17	2.4	18	85	7	54	36	20	2	40	1.65
42695974--42696019	4	11.2	4	86	4	56	0	19	2	78	0.86
42696708--42696936	104	2.2	104	80	2	280	38	10	22	27	1.88
42705002--42705036	16	2.3	15	90	5	52	62	2	2	31	1.24
42706433--42706657	87	2.6	87	79	4	249	34	18	16	30	1.93
42706583--42707213	71	8.3	74	80	9	587	34	20	16	29	1.94
42706583--42707041	224	2.0	221	84	5	593	33	21	17	28	1.96
42706537--42707282	155	4.8	154	77	13	519	34	20	16	29	1.94
42706615--42707211	229	2.6	221	80	10	593	34	20	16	28	1.95
42707307--42707691	77	4.9	77	80	10	376	33	20	15	30	1.93
42707693--42707736	13	3.4	13	83	0	61	70	6	9	13	1.33
42707792--42707835	13	3.4	13	83	0	61	70	6	9	13	1.33
42707617--42707894	99	2.8	99	94	1	470	40	18	15	25	1.90
42707816--42707982	73	2.3	74	86	2	239	34	19	16	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42707899--42708075	91	2.0	89	86	6	250	37	18	16	27	1.93
42720012--42720046	16	2.3	15	90	5	52	62	2	2	31	1.24
42720161--42720220	23	2.9	20	70	15	59	56	5	6	31	1.47
42720198--42720268	25	3.0	23	78	9	81	57	5	5	30	1.45
42720295--42720418	25	5.2	25	75	11	84	54	3	6	35	1.42
42720897--42720995	30	3.3	30	88	0	153	19	5	48	27	1.69
42720902--42720955	18	3.3	18	66	28	57	24	7	46	22	1.77
42721765--42721797	14	2.3	15	89	10	59	24	0	6	69	1.10
42724951--42725010	22	2.6	23	78	14	70	58	1	0	40	1.08
42727292--42727356	29	2.2	31	88	5	98	40	1	9	49	1.44
42731068--42731107	20	2.0	20	100	0	80	55	15	5	25	1.60
42733034--42733072	16	2.4	16	82	0	51	38	17	12	30	1.88
42734335--42734373	12	3.2	12	92	0	60	15	7	5	71	1.26
42734495--42734556	19	3.3	19	78	13	83	24	9	4	61	1.47
42734511--42734567	18	3.1	19	73	14	64	26	10	3	59	1.46
42734494--42734567	37	2.0	37	97	0	139	25	10	4	59	1.48
42735903--42735959	26	2.2	26	81	12	64	42	3	0	54	1.17
42735983--42736024	22	1.9	22	85	0	57	52	0	0	47	1.00
42736046--42736087	13	2.9	14	80	13	50	54	0	0	45	0.99
42736050--42736086	16	2.3	16	86	13	58	59	0	0	40	0.97
42736119--42736175	15	3.5	15	71	17	51	49	1	1	47	1.22
42739234--42739270	15	2.5	15	91	4	58	29	0	5	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42740810--42740854	19	2.3	20	82	17	60	33	4	8	53	1.52
42741401--42741476	37	2.1	37	94	0	134	43	6	11	38	1.68
42744319--42744392	24	3.0	24	86	7	94	5	4	18	71	1.21
42744319--42744393	27	3.0	25	88	5	89	5	4	18	72	1.20
42748302--42748333	16	2.1	16	88	11	50	43	9	0	46	1.35
42750740--42750775	17	2.1	17	94	0	63	41	19	13	25	1.88
42752643--42752681	21	1.9	20	89	5	60	58	0	2	38	1.12
42762484--42762528	18	2.5	19	75	17	51	53	2	2	42	1.25
42762493--42762535	22	1.9	23	85	4	61	53	2	6	37	1.41
42763914--42763949	16	2.1	17	90	10	56	69	0	0	30	0.89
42764260--42764329	36	1.9	36	94	0	122	42	8	15	32	1.77
42768394--42768425	9	3.7	9	95	4	57	21	21	12	43	1.86
42776126--42776257	44	3.0	43	73	11	124	36	21	21	20	1.95
42776141--42776295	44	3.6	42	76	9	150	36	22	19	21	1.95
42776409--42776563	44	3.5	43	73	10	143	36	23	21	18	1.95
42776404--42776566	88	1.9	87	89	1	254	36	23	21	19	1.95
42776095--42776792	309	2.3	309	93	0	1164	34	20	21	23	1.97
42779263--42779304	21	2.0	21	81	9	50	16	9	7	66	1.42
42781064--42781155	38	2.4	38	87	1	123	36	16	18	28	1.92
42781997--42782036	18	2.2	18	95	0	71	57	2	20	20	1.52
42786886--42786917	6	5.3	6	92	0	55	81	3	0	15	0.82
42799835--42799905	23	3.3	23	70	24	73	40	5	8	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42801071--42801101	2	15.5	2	100	0	62	48	0	0	51	1.00
42801828--42801873	25	1.9	25	82	8	60	34	0	0	65	0.93
42801826--42801879	23	2.2	25	75	18	60	37	0	0	62	0.95
42802889--42802920	15	2.1	15	100	0	64	46	21	6	25	1.74
42808154--42808179	9	2.9	9	100	0	52	11	0	0	88	0.52
42815475--42815531	30	1.9	30	86	10	82	54	12	3	29	1.54
42818893--42818953	31	2.0	31	93	0	104	37	9	8	44	1.68
42820738--42820798	29	2.1	29	96	0	113	22	6	18	52	1.68
42824185--42824888	235	2.9	235	85	4	883	36	19	10	33	1.86
42824952--42825077	63	2.0	62	84	6	164	42	24	12	19	1.86
42826935--42826988	21	2.6	21	76	5	56	61	16	7	14	1.55
42836480--42836724	81	3.0	81	98	0	472	22	27	4	45	1.72
42837036--42837061	12	2.2	12	100	0	52	50	7	0	42	1.31
42837232--42837363	3	44.3	3	70	13	67	31	7	3	56	1.45
42837329--42837378	21	2.5	20	81	12	59	28	4	6	62	1.37
42837461--42837493	4	8.2	4	100	0	66	24	0	0	75	0.80
42845497--42845672	46	3.8	46	79	12	207	21	21	28	28	1.98
42845494--42845665	93	1.8	93	94	0	308	21	21	29	27	1.99
42849422--42849446	12	2.1	12	100	0	50	24	36	24	16	1.94
42849602--42849662	9	6.8	9	84	0	68	42	18	8	31	1.79
42856814--42857290	87	5.4	86	71	10	286	32	20	24	22	1.98
42856814--42857222	43	9.3	43	66	20	179	31	21	24	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42856814--42857222	132	3.1	132	92	1	644	31	21	24	22	1.98
42858150--42858192	17	2.5	17	88	3	59	65	6	0	27	1.18
42859263--42859406	3	48.3	3	74	12	100	31	6	3	58	1.40
42864413--42864474	30	2.1	30	96	0	115	37	24	14	24	1.93
42865164--42865273	44	2.5	44	78	8	116	30	20	21	26	1.98
42865161--42865410	137	1.8	137	81	5	308	30	18	22	28	1.97
42865483--42865642	44	3.6	44	80	2	151	32	17	18	31	1.94
42865501--42865657	44	3.5	44	82	4	163	34	15	21	28	1.94
42865812--42865856	21	2.1	21	88	8	65	62	22	4	11	1.46
42870794--42870826	18	1.9	17	88	11	50	27	15	12	45	1.81
42872093--42872184	29	3.2	29	87	1	123	29	32	15	22	1.95
42874851--42874935	42	2.0	42	100	0	170	32	22	9	35	1.86
42876008--42876125	60	2.0	61	94	1	211	44	22	6	26	1.78
42877734--42877768	18	1.9	18	88	0	52	45	5	0	48	1.26
42880916--42880965	25	2.0	25	84	4	64	50	0	2	48	1.12
42885408--42885447	20	1.9	21	85	10	55	32	12	12	42	1.80
42885585--42885620	18	2.1	18	89	5	56	41	0	0	58	0.98
42888286--42888349	30	2.1	30	81	16	71	56	3	3	37	1.31
42888894--42888934	21	2.0	21	85	9	57	56	2	0	41	1.13
42888913--42888960	26	1.9	24	83	8	60	50	4	2	43	1.33
42891535--42891600	28	2.3	29	80	12	73	59	1	9	30	1.38
42907790--42907844	28	2.0	28	100	0	110	32	27	7	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42908854--42909057	102	2.0	102	94	0	354	39	16	12	30	1.86
42910211--42910330	61	2.0	62	85	5	163	32	9	25	32	1.87
42911267--42911330	31	2.1	31	93	0	110	28	21	9	40	1.84
42911342--42911410	35	2.0	35	85	0	93	27	5	10	56	1.55
42914420--42914478	9	6.6	9	80	7	75	47	18	6	27	1.74
42914420--42914478	27	2.2	27	90	6	93	47	18	6	27	1.74
42914497--42914543	6	7.5	6	86	9	67	17	0	4	78	0.90
42914497--42914543	20	2.5	20	86	6	71	17	0	4	78	0.90
42917429--42917509	35	2.2	37	82	10	96	66	0	0	33	0.92
42917510--42917542	17	1.9	17	93	0	57	27	0	0	72	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172