genome.fa.s10.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  93  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31297931--31297957	8	3.4	8	100	0	54	0	22	22	55	1.44
31307860--31307967	43	2.5	43	86	5	139	28	12	22	36	1.91
31311666--31311843	27	6.6	27	83	3	178	29	28	14	27	1.95
31311687--31311842	82	1.9	81	88	3	233	29	28	15	26	1.96
31313982--31314121	43	3.3	43	76	11	135	29	15	22	32	1.94
31315673--31315763	34	2.8	32	83	3	101	29	24	21	24	1.99
31323267--31323374	43	2.5	43	90	3	155	36	24	12	27	1.91
31323208--31323365	86	1.8	85	81	9	196	34	25	12	27	1.92
31324923--31325124	53	3.8	53	82	1	217	33	14	23	28	1.94
31325282--31325377	29	3.4	28	75	13	97	31	17	25	26	1.97
31325282--31325459	28	6.3	27	68	14	83	32	17	23	25	1.97
31325709--31325782	19	3.3	23	65	24	66	43	2	25	28	1.68
31325715--31325805	45	2.0	45	100	0	182	46	4	21	27	1.71
31325723--31325794	22	3.2	22	63	18	58	47	4	22	26	1.69
31328390--31328607	40	5.5	40	87	3	282	23	23	27	25	2.00
31333099--31333243	40	3.6	40	96	0	263	22	22	28	26	1.99
31335539--31335585	22	2.1	22	88	7	69	48	8	29	12	1.71
31336707--31336989	150	1.9	150	93	0	494	26	21	22	28	1.99
31340436--31340723	40	7.3	40	85	8	344	25	21	26	27	1.99
31340436--31340723	80	3.7	80	85	6	387	25	21	26	27	1.99
31352346--31352490	40	3.6	39	83	6	164	25	23	26	24	2.00
31354067--31354119	26	2.0	25	82	13	63	24	26	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31354377--31354500	27	4.5	28	82	6	128	29	25	13	32	1.94
31361200--31361231	3	10.7	3	93	0	55	31	31	0	37	1.58
31365215--31365315	52	1.9	52	93	0	175	21	15	30	31	1.95
31369522--31369547	11	2.4	11	100	0	52	23	42	0	34	1.54
31375701--31375804	52	2.0	52	84	3	138	21	17	29	31	1.96
31377621--31377685	32	2.0	32	100	0	130	35	21	9	33	1.85
31379014--31379090	27	2.9	27	92	0	118	31	15	23	29	1.95
31379130--31379331	54	3.8	55	80	4	207	42	19	8	30	1.81
31379087--31379389	81	3.7	79	78	6	252	40	18	8	31	1.82
31379079--31379396	27	11.8	27	75	7	171	39	18	9	32	1.82
31379658--31379778	41	3.0	41	88	0	188	23	21	28	26	1.99
31379926--31380071	25	5.8	25	82	0	184	19	17	26	36	1.93
31379939--31380071	50	2.7	50	95	0	239	18	17	27	36	1.94
31383990--31384181	40	4.8	40	90	1	296	23	23	28	23	2.00
31386138--31386211	26	2.8	27	85	4	105	36	18	12	32	1.88
31386191--31386481	27	10.8	27	77	5	239	41	18	9	29	1.83
31386192--31386403	107	2.0	108	83	2	266	39	19	10	30	1.85
31386140--31386481	27	12.7	27	80	5	235	40	18	10	30	1.84
31386745--31386865	41	3.0	41	82	0	161	24	19	27	28	1.98
31387013--31387156	25	5.8	25	79	0	162	19	16	26	37	1.93
31387019--31387156	50	2.8	50	90	0	222	18	16	27	36	1.93
31389991--31390064	26	2.8	27	83	4	96	36	17	12	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31390044--31390335	27	10.8	27	77	5	207	41	18	9	30	1.83
31390043--31390335	54	5.4	53	78	7	232	41	19	9	30	1.83
31390039--31390276	81	2.9	81	82	9	272	40	20	9	29	1.83
31390200--31390330	55	2.4	54	79	6	147	44	13	10	31	1.78
31390000--31390335	27	12.5	26	79	8	185	39	18	10	30	1.85
31390600--31390719	41	2.9	41	82	6	145	24	20	28	26	1.99
31390867--31391007	25	5.8	25	74	8	130	19	17	25	37	1.93
31390873--31391007	50	2.9	45	78	10	162	18	17	26	37	1.93
31393646--31393746	52	1.9	52	91	0	166	15	16	36	30	1.91
31393873--31393971	27	3.7	27	86	0	108	36	17	17	29	1.92
31393876--31393978	54	1.9	53	86	2	143	37	17	16	28	1.91
31393989--31394252	27	9.8	27	78	4	187	39	17	10	32	1.84
31393984--31394221	80	2.9	81	78	4	212	40	17	9	32	1.82
31394026--31394230	54	3.8	54	79	3	207	39	17	10	33	1.84
31394069--31394221	55	2.8	54	83	3	191	43	18	9	29	1.81
31394063--31394252	82	2.3	81	78	4	211	39	17	10	32	1.84
31394669--31394944	50	5.5	50	96	0	489	19	15	26	39	1.91
31394669--31394954	25	11.4	25	78	0	311	19	15	25	39	1.91
31400746--31400826	41	1.9	41	90	5	126	28	17	27	27	1.97
31400748--31400854	43	2.5	42	82	7	137	28	17	25	28	1.98
31400941--31400987	20	2.3	20	88	0	76	31	2	29	36	1.70
31411742--31411822	43	1.9	42	85	7	110	30	25	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31417263--31417450	49	3.8	49	86	5	270	28	25	19	27	1.99
31417269--31417451	100	1.8	100	95	0	330	28	25	19	26	1.99
31417680--31417733	27	2.0	27	85	0	72	38	14	7	38	1.75
31420769--31420940	40	4.3	40	84	5	215	24	21	26	27	1.99
31438136--31438164	14	2.0	15	93	6	51	51	20	0	27	1.47
31443110--31443294	40	4.7	40	83	5	187	28	28	20	23	1.99
31450989--31451173	40	4.7	40	81	5	178	27	28	20	24	1.99
31450956--31451173	40	5.5	39	77	7	165	25	27	20	25	1.99
31459695--31459866	93	1.8	93	92	0	290	28	29	20	22	1.98
31459688--31459863	46	3.8	46	76	12	189	29	28	19	21	1.98
31464889--31465852	482	2.0	482	96	0	1757	28	25	18	26	1.98
31480419--31480447	6	4.8	6	100	0	58	68	17	0	13	1.20
31482565--31482593	14	2.0	15	93	6	51	3	13	6	75	1.13
31489982--31490125	71	2.0	71	100	0	288	34	6	15	42	1.74
31490139--31490228	38	2.4	38	94	0	153	41	11	23	24	1.87
31490215--31490250	19	1.9	19	94	5	65	41	0	22	36	1.54
31490339--31490448	47	2.3	47	80	0	139	26	11	21	40	1.88
31490850--31490882	7	4.7	7	100	0	66	15	15	30	39	1.88
31497527--31497552	8	3.2	8	100	0	52	23	11	15	50	1.76
31502497--31502758	39	6.7	40	87	7	337	25	22	27	24	2.00
31511638--31511821	40	4.6	41	81	12	208	25	22	27	25	2.00
31511638--31511821	79	2.3	81	82	11	222	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31511690--31511854	79	2.1	79	82	8	194	26	21	27	24	1.99
31515203--31515250	6	7.7	6	88	9	60	20	0	10	68	1.18
31515188--31515250	20	3.2	19	82	11	65	22	3	11	63	1.41
31517112--31517163	26	2.0	26	100	0	104	46	3	26	23	1.69
31518521--31518620	27	3.7	27	76	5	103	31	24	13	32	1.93
31523431--31523610	85	2.1	85	91	0	288	40	7	17	35	1.78
31525990--31526230	50	4.8	50	84	1	268	21	28	22	27	1.99
31527323--31527349	12	2.2	12	100	0	54	37	18	14	29	1.91
31532886--31532926	21	1.9	22	90	5	66	73	0	19	7	1.07
31542976--31543053	29	2.7	28	82	11	95	24	16	30	28	1.97
31543008--31543333	174	1.9	174	88	1	501	29	15	24	30	1.95
31558367--31558419	14	3.9	13	75	7	52	18	9	1	69	1.25
31564995--31565032	15	2.6	15	84	15	53	5	0	39	55	1.23
31573268--31573404	71	1.9	70	92	1	229	28	8	13	48	1.72
31573992--31574067	36	2.1	36	83	7	93	31	7	23	36	1.84
31577947--31577988	22	2.0	21	90	4	66	33	0	11	54	1.37
31589066--31589110	18	2.5	18	82	10	56	48	0	2	48	1.13
31594403--31594471	29	2.4	29	90	4	104	30	18	14	36	1.91
31602193--31602276	43	2.0	43	100	0	168	44	11	16	27	1.83
31602497--31602654	43	3.8	40	74	9	113	28	25	16	29	1.97
31602768--31603092	30	10.7	30	82	7	336	42	14	6	36	1.72
31602803--31603092	120	2.4	118	91	2	472	43	14	6	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31604982--31605021	21	2.0	20	85	5	53	50	25	2	22	1.62
31606760--31606846	33	2.6	33	81	0	102	19	18	14	47	1.83
31606733--31606844	33	3.4	33	78	1	98	19	18	14	47	1.83
31608823--31608855	10	3.3	10	95	0	57	21	15	15	48	1.81
31609502--31609609	55	2.0	55	92	0	180	29	12	25	32	1.92
31619830--31619882	25	2.2	24	89	3	79	37	24	22	15	1.92
31625831--31625878	19	2.4	21	76	16	57	22	31	8	37	1.84
31641071--31641097	3	9.0	3	100	0	54	66	0	0	33	0.92
31641429--31641495	16	4.4	16	75	21	54	67	2	7	22	1.30
31641974--31642008	6	5.8	6	100	0	70	0	14	0	85	0.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172