genome.fa.s10.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  156  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51122413--51122454	3	14.7	3	80	9	52	30	4	0	64	1.14
51122425--51122454	12	2.5	12	100	0	60	33	6	0	60	1.23
51125857--51125913	30	2.0	27	83	12	71	31	1	1	64	1.13
51133384--51133492	26	4.2	26	91	0	182	33	8	23	34	1.85
51137049--51137111	24	2.5	24	82	7	63	61	4	4	28	1.36
51142646--51142726	40	2.0	40	97	0	153	29	13	9	46	1.75
51144731--51144808	39	2.0	39	100	0	156	30	23	10	35	1.88
51150044--51150080	19	2.0	19	89	5	58	32	5	10	51	1.60
51158295--51158491	88	2.2	88	100	0	394	41	8	19	30	1.81
51158980--51159112	46	2.9	46	88	0	185	42	15	22	19	1.88
51159390--51159422	17	2.0	17	94	5	59	48	0	15	36	1.45
51170598--51170721	62	2.0	62	98	0	239	41	14	12	32	1.83
51178498--51178595	49	2.0	51	85	4	137	28	21	14	35	1.92
51179902--51179990	44	2.0	44	97	0	169	67	7	13	11	1.42
51182099--51182137	17	2.3	18	82	13	55	38	0	5	56	1.22
51182716--51182761	18	2.8	17	78	15	53	0	28	41	30	1.56
51183245--51183270	11	2.4	11	100	0	52	30	0	0	69	0.89
51184666--51184697	3	10.7	3	93	0	55	68	0	31	0	0.90
51185311--51185353	20	2.2	20	100	0	86	25	23	41	9	1.84
51204401--51204430	15	2.0	15	100	0	60	33	20	20	26	1.97
51206537--51206563	5	5.4	5	100	0	54	62	0	0	37	0.95
51207944--51207985	19	2.3	18	87	4	57	26	2	2	69	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51207970--51208051	33	2.3	39	83	12	104	34	13	0	52	1.41
51207997--51208081	23	3.6	23	70	9	64	29	9	2	58	1.42
51208344--51208450	54	2.0	54	96	0	196	20	14	10	55	1.68
51221418--51221450	17	2.0	17	88	5	50	33	15	3	48	1.60
51221731--51221994	46	5.7	46	84	0	348	18	26	14	40	1.89
51221746--51221994	92	2.7	92	97	0	462	17	26	14	41	1.88
51226726--51226841	41	2.8	43	87	5	150	12	23	32	31	1.92
51227178--51227285	45	2.5	43	83	6	119	27	22	22	27	1.99
51227203--51227304	43	2.3	45	81	9	122	30	22	23	23	1.99
51237357--51237426	34	2.1	34	94	0	122	41	5	35	17	1.73
51243862--51243927	31	2.1	31	88	0	96	50	21	12	16	1.77
51244179--51244233	21	2.6	21	85	0	74	1	49	18	30	1.58
51244616--51244644	13	2.1	14	93	6	51	55	10	0	34	1.34
51249707--51249827	9	13.6	9	70	15	65	33	1	21	42	1.63
51249724--51249810	36	2.5	36	86	3	124	33	1	19	45	1.58
51249757--51249838	43	1.9	43	92	0	137	35	0	18	46	1.49
51249827--51249851	13	1.9	13	100	0	50	40	4	8	48	1.51
51249781--51250011	56	4.2	56	91	4	364	34	0	15	49	1.48
51249880--51249965	13	6.3	13	75	19	70	33	0	13	52	1.41
51249968--51249998	9	3.4	9	90	0	53	29	0	19	51	1.47
51250427--51250473	10	5.0	9	80	15	51	51	0	8	40	1.33
51251664--51251761	35	2.7	37	87	12	150	37	10	16	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51251664--51251754	19	4.9	19	92	8	161	37	10	15	36	1.83
51251664--51251777	19	5.8	22	87	10	96	36	9	15	37	1.81
51252046--51252081	18	1.9	19	88	5	56	30	0	0	69	0.89
51254829--51255022	101	2.0	97	82	6	237	43	24	13	18	1.85
51254922--51255400	114	4.2	114	81	6	504	38	24	13	24	1.91
51254922--51255400	227	2.1	231	81	6	537	38	24	13	24	1.91
51255794--51255843	22	2.3	21	86	10	66	44	32	2	22	1.64
51256200--51256334	7	19.4	7	75	10	53	46	30	0	22	1.57
51256200--51256272	28	2.6	28	86	2	94	49	30	0	20	1.49
51256221--51256334	21	5.4	21	68	8	79	48	28	0	21	1.57
51256234--51256330	14	6.9	14	70	6	63	48	26	1	23	1.58
51256254--51256330	35	2.2	36	81	11	97	48	27	1	23	1.59
51256221--51256334	42	2.7	42	80	8	142	48	28	0	21	1.57
51256387--51256490	38	2.7	38	86	8	147	26	22	20	30	1.98
51256533--51256626	40	2.3	40	80	3	109	17	22	24	36	1.95
51259300--51259331	11	2.8	12	86	13	50	0	18	0	81	0.70
51259272--51259348	33	2.4	32	78	20	81	7	14	1	76	1.06
51259273--51259348	39	1.9	39	82	10	93	6	14	1	77	1.03
51259868--51262448	862	3.0	862	96	0	4707	31	11	20	36	1.89
51266681--51266791	55	2.0	55	96	0	204	32	18	11	37	1.87
51272684--51272976	46	6.7	46	76	12	269	32	21	19	26	1.97
51272900--51273103	43	4.7	43	76	10	173	30	23	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51272943--51273136	43	4.6	42	72	9	128	29	22	22	25	1.99
51272943--51273148	87	2.4	85	91	4	319	30	21	22	25	1.99
51274738--51275137	3	133.3	3	100	0	800	33	0	0	66	0.92
51283801--51283833	16	2.0	17	88	5	50	39	0	0	60	0.97
51284029--51284088	17	3.4	18	71	15	63	38	5	0	56	1.21
51283949--51284198	107	2.3	108	75	14	260	37	6	6	50	1.53
51284354--51284551	101	2.0	100	82	2	245	44	2	6	46	1.41
51285122--51285165	21	2.2	20	83	4	52	63	4	0	31	1.14
51289783--51289832	12	3.8	13	74	25	52	24	14	4	58	1.53
51294366--51294445	36	2.2	36	97	2	151	32	21	3	42	1.70
51301400--51301454	10	5.8	9	87	10	74	60	0	0	40	0.97
51301405--51301452	5	10.0	5	91	8	82	62	0	0	37	0.95
51301405--51301454	19	2.6	19	96	0	91	60	0	0	40	0.97
51301993--51302032	20	2.0	20	85	0	53	57	5	2	35	1.34
51302305--51302345	19	2.2	19	86	4	57	46	7	4	41	1.53
51302905--51302942	18	2.0	19	85	10	51	60	0	2	36	1.11
51314089--51314156	35	1.9	35	93	0	118	35	13	10	41	1.78
51316297--51316387	32	2.8	32	76	12	87	29	6	25	38	1.81
51316524--51316669	27	5.5	26	70	8	89	27	12	26	34	1.92
51316550--51316644	26	3.6	26	77	8	111	26	10	28	34	1.89
51316547--51316669	53	2.3	53	95	0	228	26	12	26	34	1.91
51322112--51322147	3	12.0	3	100	0	72	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51324316--51324407	46	2.0	46	97	0	175	32	11	15	40	1.84
51334200--51334246	25	1.9	24	82	4	58	53	2	0	44	1.12
51343031--51343071	21	2.0	21	85	0	55	12	29	0	58	1.34
51358419--51358467	18	2.6	18	83	9	62	46	0	0	53	1.00
51358814--51358873	19	3.4	17	75	15	50	28	3	1	66	1.17
51359110--51359146	15	2.3	17	90	9	60	83	0	0	16	0.64
51361499--51361523	13	1.9	13	100	0	50	32	0	4	64	1.12
51361930--51361987	25	2.4	25	88	5	84	58	0	1	39	1.08
51362044--51362111	33	2.1	33	88	0	100	54	1	5	38	1.34
51366191--51366238	24	2.0	24	95	0	87	72	16	6	4	1.20
51383537--51383587	12	4.0	12	77	20	50	72	3	0	23	1.01
51384040--51384082	23	2.0	23	86	9	63	27	13	6	51	1.67
51384398--51384432	16	2.3	15	90	5	52	31	2	2	62	1.24
51389191--51389242	27	1.9	27	84	0	68	48	0	9	42	1.36
51392758--51392792	17	2.1	17	88	0	52	77	0	22	0	0.78
51393071--51393160	28	3.1	27	75	13	72	42	5	25	26	1.77
51393179--51393230	2	26.5	2	96	3	97	0	48	0	51	1.00
51394411--51394461	25	1.9	26	84	11	68	62	0	13	23	1.31
51394456--51394528	21	3.3	21	76	14	76	60	2	10	26	1.44
51394456--51394531	24	3.3	24	76	14	88	60	2	10	26	1.43
51398831--51398872	22	1.9	22	85	0	57	47	11	9	30	1.72
51400554--51400580	6	4.5	6	100	0	54	29	0	55	14	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51402322--51402347	6	4.3	6	100	0	52	80	0	19	0	0.71
51410712--51410794	31	2.7	32	74	10	91	24	2	9	63	1.36
51411304--51411513	41	5.1	41	79	4	194	34	22	16	26	1.95
51411987--51412067	34	2.2	36	85	10	103	25	2	25	45	1.66
51418990--51419040	22	2.3	23	80	12	61	49	13	3	33	1.61
51419066--51419107	19	2.2	19	84	16	52	59	2	0	38	1.10
51419077--51419136	27	2.2	25	78	16	66	66	1	1	30	1.11
51419078--51419123	17	2.5	19	82	10	60	65	2	0	32	1.05
51419078--51419123	19	2.5	19	80	16	53	65	2	0	32	1.05
51419230--51419306	7	11.4	7	72	16	56	57	0	2	40	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172