genome.fa.s10.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  142  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46692688--46692726	19	2.1	19	100	0	78	53	15	15	15	1.73
46694355--46694415	22	2.7	23	85	5	72	36	3	18	42	1.66
46697668--46697696	14	2.1	14	100	0	58	72	0	13	13	1.13
46711991--46712074	42	2.0	42	100	0	168	59	7	0	33	1.25
46712002--46712073	23	3.3	23	69	15	80	56	8	0	34	1.29
46712189--46712219	11	2.8	11	90	0	53	32	0	0	67	0.91
46712335--46712403	30	2.3	30	92	2	102	55	17	5	21	1.63
46713957--46714080	66	1.9	62	87	6	176	36	4	11	47	1.61
46718739--46718818	30	2.6	31	86	9	112	25	13	26	35	1.93
46718807--46718868	29	2.2	28	85	2	79	22	17	24	35	1.95
46718814--46718886	28	2.6	29	80	2	85	20	17	24	36	1.94
46720761--46720869	55	2.0	56	96	1	202	41	11	18	28	1.86
46722633--46722716	36	2.3	37	82	12	102	53	2	8	35	1.44
46722644--46722716	38	2.0	37	84	10	96	54	1	9	34	1.41
46722758--46722956	3	66.3	3	100	0	398	66	0	0	33	0.92
46723445--46723472	12	2.3	12	100	0	56	0	42	35	21	1.53
46730200--46730258	3	19.7	3	85	0	82	64	1	3	30	1.20
46736078--46736116	15	2.6	15	88	8	53	48	23	0	28	1.51
46736929--46736957	14	2.0	15	93	6	51	6	10	6	75	1.17
46743073--46743135	25	2.6	25	85	7	76	76	0	11	12	1.03
46743098--46743134	18	2.1	18	94	0	65	81	0	8	10	0.89
46744448--46745812	100	13.6	100	89	0	1834	32	23	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46746576--46746633	24	2.4	23	81	13	64	17	6	3	72	1.21
46757484--46757516	11	2.9	12	86	13	52	33	0	0	66	0.92
46759512--46759555	16	2.5	17	85	14	63	27	2	0	70	0.99
46760216--46760255	17	2.3	18	91	4	64	70	0	0	30	0.88
46760264--46760341	32	2.5	31	81	4	102	32	14	16	37	1.89
46763778--46763839	18	3.4	18	80	13	65	50	0	0	50	1.00
46763827--46763877	20	2.5	20	79	17	61	60	9	0	29	1.28
46764497--46764734	91	2.6	93	87	2	329	32	11	14	42	1.81
46768183--46768275	47	2.0	46	93	0	150	32	17	24	24	1.96
46771952--46772012	18	3.3	18	68	17	52	26	14	24	34	1.94
46771953--46772019	20	3.5	20	70	15	68	25	16	23	34	1.95
46773443--46773484	21	2.0	22	81	13	52	35	7	16	40	1.76
46773515--46773756	124	1.9	124	81	7	285	36	8	14	40	1.77
46788342--46788432	44	2.1	44	85	4	121	46	7	5	40	1.56
46792760--46792788	5	6.0	5	96	4	51	41	0	0	58	0.98
46792788--46792816	13	2.1	14	93	6	51	75	0	3	20	0.94
46793682--46793720	5	7.8	5	97	0	60	41	12	5	41	1.65
46797738--46797781	17	2.7	16	82	3	52	70	2	2	25	1.10
46798718--46798758	19	2.2	19	86	8	57	48	0	0	51	1.00
46799742--46799794	26	2.0	26	82	7	63	43	9	0	47	1.36
46800810--46800960	78	1.9	77	80	6	171	29	17	16	36	1.92
46800923--46801106	43	4.4	42	75	2	136	29	19	20	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46803274--46803329	22	2.5	23	85	5	80	32	21	10	35	1.88
46804634--46804681	18	2.6	19	80	12	55	66	6	2	25	1.26
46804844--46804881	20	1.9	20	84	10	51	63	2	2	31	1.22
46805903--46805959	29	2.0	29	96	0	105	21	24	36	17	1.94
46806327--46806636	83	3.7	83	97	0	575	25	21	20	32	1.97
46817213--46817470	129	2.0	129	96	1	473	33	14	17	34	1.90
46818768--46818794	8	3.4	8	100	0	54	11	62	25	0	1.28
46819709--46819809	40	2.5	40	82	9	134	34	6	18	39	1.78
46819709--46819801	20	4.7	19	83	10	107	34	7	19	38	1.80
46823297--46823422	63	2.0	63	100	0	252	33	3	30	33	1.74
46823408--46823443	17	2.1	17	100	0	72	11	5	22	61	1.50
46825109--46825212	27	4.1	25	76	13	81	26	1	5	65	1.26
46825185--46825226	19	2.3	19	87	4	59	33	2	2	61	1.21
46825269--46825335	25	2.6	26	83	4	82	31	8	2	56	1.45
46825783--46826012	127	1.8	127	82	1	300	30	16	16	35	1.92
46830960--46831011	27	1.9	27	84	0	68	21	26	32	19	1.97
46831210--46831248	19	2.1	18	85	4	51	64	0	33	2	1.08
46831452--46831891	113	3.9	113	94	1	771	32	0	15	50	1.51
46831452--46831891	225	2.0	224	94	2	767	32	0	15	50	1.51
46832009--46832040	15	2.1	16	94	5	57	37	0	6	56	1.25
46834189--46834247	21	2.6	22	82	12	68	61	0	3	35	1.13
46834297--46834335	19	2.1	19	95	0	69	51	5	12	30	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46834364--46834409	23	2.0	23	87	4	67	54	8	4	32	1.51
46834436--46834469	17	2.0	17	94	0	59	50	0	8	41	1.34
46834536--46834644	3	34.7	3	71	14	69	58	2	5	33	1.35
46836294--46836610	88	3.6	86	80	8	340	35	19	16	28	1.94
46836530--46836828	73	4.1	73	86	4	431	31	20	18	29	1.96
46836530--46836828	147	2.0	147	88	2	449	31	20	18	29	1.96
46838535--46838672	71	1.9	72	95	1	251	32	14	24	28	1.94
46848330--46848532	46	4.3	48	88	7	265	35	14	21	28	1.92
46848264--46848532	98	2.7	98	93	0	457	34	14	22	28	1.93
46848496--46848641	37	4.0	37	93	1	242	36	16	21	24	1.94
46849896--46850039	49	2.9	49	92	1	225	23	13	29	32	1.94
46853231--46853433	46	4.3	48	88	7	265	35	14	21	28	1.92
46853165--46853433	98	2.7	98	93	0	457	34	14	22	28	1.93
46853397--46853542	37	4.0	37	93	1	242	36	16	21	24	1.94
46855375--46855481	53	2.0	53	96	0	196	35	21	18	24	1.96
46856941--46857011	27	2.7	26	77	4	79	57	4	4	33	1.37
46857003--46857069	21	3.2	20	80	15	75	61	0	7	31	1.24
46857818--46857848	10	3.1	10	90	0	53	9	0	6	83	0.79
46859384--46859414	12	2.6	12	94	0	53	35	29	35	0	1.58
46859569--46859681	33	3.4	34	78	11	110	18	43	10	27	1.83
46862657--46862709	23	2.4	22	76	20	56	9	18	1	69	1.25
46867797--46867859	27	2.3	27	77	0	63	30	25	23	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46871249--46871311	31	2.0	31	100	0	126	39	12	12	34	1.82
46872321--46872511	18	10.6	18	75	10	158	36	16	13	34	1.87
46872321--46872523	54	3.8	54	76	6	196	36	16	12	34	1.87
46872322--46872523	72	2.8	70	78	5	215	36	16	12	34	1.87
46872640--46872746	47	2.3	47	88	0	160	39	21	20	18	1.93
46872775--46872799	12	2.1	12	100	0	50	40	20	24	16	1.91
46873359--46873403	19	2.4	18	86	13	65	0	33	0	66	0.92
46878139--46878416	18	15.1	18	71	11	152	37	15	11	35	1.84
46878232--46878416	18	10.3	18	76	9	153	37	15	11	36	1.83
46878233--46878416	72	2.5	73	81	6	223	37	15	11	35	1.83
46878644--46878688	19	2.4	18	86	13	65	0	33	0	66	0.92
46883099--46883151	21	2.5	21	93	0	88	30	35	9	24	1.87
46884053--46884097	23	2.1	22	84	12	58	22	13	4	60	1.51
46885057--46885091	18	1.9	18	88	0	52	48	0	0	51	1.00
46885050--46885110	22	2.8	22	78	7	70	47	1	1	49	1.21
46890644--46890708	31	2.1	31	91	0	103	40	9	16	33	1.81
46892607--46892636	15	2.0	15	93	0	51	43	0	23	33	1.54
46893155--46893212	29	2.0	29	86	0	80	5	24	17	53	1.64
46895114--46895167	26	2.1	26	92	0	90	35	7	14	42	1.74
46896162--46896250	42	2.1	42	83	2	108	21	8	40	29	1.83
46899782--46899888	53	2.0	53	87	3	153	23	12	28	36	1.90
46899835--46899954	47	2.6	45	86	5	152	24	13	26	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46901828--46902199	130	2.9	129	83	1	440	29	18	18	34	1.94
46905785--46905836	21	2.5	21	96	3	97	26	19	9	44	1.81
46913994--46914365	44	8.5	44	90	1	550	28	14	28	27	1.95
46913996--46914365	130	2.8	131	88	0	562	28	14	28	27	1.95
46921182--46921224	14	3.3	14	81	15	56	34	0	9	55	1.32
46938076--46938251	37	4.8	37	96	0	298	39	13	21	26	1.90
46938214--46938337	46	2.8	46	91	3	200	33	16	22	27	1.96
46948692--46948745	23	2.4	23	78	9	58	50	1	1	46	1.23
46948920--46949003	28	3.0	28	87	1	123	19	4	30	45	1.71
46949302--46949330	13	2.1	14	93	6	51	44	3	0	51	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172