genome.fa.s10.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  158  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51757346--51757470	66	1.9	67	88	5	191	51	7	8	33	1.59
51760682--51760759	32	2.5	31	80	14	88	56	5	6	32	1.47
51762529--51762573	12	3.4	13	82	14	56	66	0	2	31	1.04
51770231--51770335	46	2.3	46	98	0	201	24	24	13	37	1.92
51774668--51774709	5	8.4	5	79	10	50	76	0	0	23	0.79
51774668--51774714	15	3.3	14	78	21	53	76	0	0	23	0.78
51779882--51779921	18	2.3	17	87	8	62	37	0	0	62	0.95
51779950--51780040	35	2.7	34	77	11	98	49	0	0	50	1.00
51779967--51780010	22	2.0	22	82	8	54	45	0	0	54	0.99
51779998--51780037	19	2.2	18	86	4	53	42	0	0	57	0.98
51780060--51780113	23	2.3	24	81	9	67	48	0	1	50	1.11
51783122--51783158	19	2.0	18	89	5	56	43	0	5	51	1.24
51785081--51785182	18	5.7	18	89	2	98	35	15	15	33	1.90
51785073--51785182	36	3.1	36	88	2	150	36	16	14	32	1.89
51786407--51786443	8	4.6	8	96	0	65	40	35	0	24	1.55
51789163--51789197	11	3.1	11	84	8	52	77	0	8	14	0.99
51801007--51801052	9	5.2	9	82	17	53	73	0	2	23	0.94
51801007--51801053	14	3.5	14	77	16	55	74	0	2	23	0.93
51804754--51804808	28	2.0	27	89	3	83	30	0	34	34	1.58
51806217--51806294	29	2.7	29	73	15	79	38	0	2	58	1.12
51806352--51806956	302	2.0	302	100	0	1210	42	10	18	27	1.84
51811125--51811154	6	5.0	6	91	0	51	83	3	0	13	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51826927--51826953	13	2.1	13	100	0	54	70	7	0	22	1.12
51835606--51835749	42	3.4	41	74	7	128	38	19	19	22	1.94
51836732--51836791	29	2.1	29	84	12	79	13	11	13	61	1.57
51838913--51838939	11	2.5	11	100	0	54	29	0	7	62	1.22
51844083--51844121	14	2.9	14	84	3	53	41	0	0	58	0.98
51844083--51844137	27	2.0	27	82	6	67	36	0	1	61	1.06
51847021--51847051	11	2.8	11	95	0	53	29	3	48	19	1.64
51849165--51849195	11	2.8	11	95	0	53	29	3	48	19	1.64
51850173--51850206	17	2.0	17	88	0	50	55	0	2	41	1.15
51852004--51852049	14	3.2	14	87	3	65	58	0	41	0	0.98
51852005--51852046	3	14.7	3	80	9	52	61	0	38	0	0.96
51852005--51852045	17	2.4	17	83	0	55	63	0	36	0	0.95
51852562--51852601	17	2.4	16	92	8	71	75	5	7	12	1.18
51852645--51852684	17	2.4	16	92	8	71	75	5	7	12	1.18
51852562--51852746	83	2.2	83	100	0	370	54	4	16	23	1.61
51852709--51853480	149	5.2	149	93	1	1276	56	8	7	28	1.55
51855074--51855196	38	3.2	38	88	0	183	21	21	26	31	1.98
51855187--51855289	46	2.3	47	85	11	144	22	20	27	30	1.98
51856234--51856718	142	3.5	133	78	10	514	57	9	5	28	1.52
51856276--51856682	136	3.0	132	81	9	445	57	8	4	29	1.49
51860654--51860701	18	2.8	17	87	6	69	50	12	2	35	1.52
51862714--51862749	18	2.0	18	100	0	72	38	0	22	38	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51864482--51864536	26	2.1	26	96	0	101	47	7	5	40	1.54
51864630--51864672	17	2.5	18	85	11	63	0	25	0	74	0.82
51864630--51864679	21	2.4	22	83	12	61	0	28	0	72	0.86
51886129--51886161	17	2.0	17	88	5	50	36	12	0	51	1.39
51886442--51886529	46	1.9	46	88	0	131	20	22	14	42	1.89
51886930--51886960	12	2.6	12	94	0	53	9	16	29	45	1.79
51887688--51887719	16	2.0	16	93	0	55	21	0	40	37	1.54
51887975--51888027	21	2.5	22	84	3	63	20	0	33	45	1.52
51888359--51888395	13	2.7	14	91	8	67	43	0	5	51	1.24
51892599--51892680	13	6.3	13	70	25	66	52	12	0	35	1.39
51892604--51892737	43	2.9	44	77	18	146	50	14	0	35	1.44
51892662--51892780	36	3.1	36	85	8	139	47	18	0	33	1.55
51892725--51892797	9	8.1	9	73	11	60	42	21	2	32	1.67
51892639--51892747	43	2.5	43	89	0	173	48	18	0	33	1.48
51896786--51896848	31	2.0	31	93	0	108	34	17	9	38	1.82
51898423--51898535	43	2.6	43	85	1	163	27	28	18	25	1.98
51903275--51903334	18	3.3	18	71	13	52	31	3	0	65	1.09
51905985--51906022	15	2.6	15	83	4	51	57	2	0	39	1.12
51907500--51907532	10	3.5	10	84	16	52	51	0	0	48	1.00
51910874--51910935	18	3.5	18	68	12	56	38	8	0	53	1.31
51913138--51913182	21	2.2	21	84	11	58	42	15	11	31	1.82
51918725--51918765	21	2.0	21	90	0	64	29	21	29	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51920671--51920704	16	2.1	16	88	0	50	50	14	17	17	1.79
51936005--51936419	47	8.7	47	95	1	704	29	30	7	32	1.85
51937558--51937599	18	2.3	18	100	0	84	42	19	4	33	1.72
51946436--51946480	22	2.0	22	86	0	63	20	6	4	68	1.29
51948825--51948862	20	2.0	20	89	5	60	47	13	15	23	1.81
51949669--51949731	5	12.2	5	80	15	67	25	0	0	74	0.82
51949753--51949816	17	3.9	16	84	13	78	28	0	1	70	0.97
51949754--51949816	33	1.9	32	84	12	83	28	0	1	69	0.97
51960857--51960910	21	2.6	21	90	0	90	25	7	37	29	1.83
51962429--51962474	24	1.9	24	82	8	58	41	2	0	56	1.11
51980629--51980679	24	2.1	24	92	0	84	45	7	15	31	1.75
51985688--51985902	106	2.0	106	98	0	412	24	13	20	41	1.88
51990387--51990433	20	2.4	19	85	3	58	31	14	2	51	1.55
51993765--51993797	12	2.8	12	95	0	57	42	3	39	15	1.62
52001732--52001879	75	2.0	75	83	2	190	25	22	22	30	1.99
52007708--52007738	12	2.6	12	94	0	53	0	25	0	74	0.82
52007818--52007848	16	1.9	16	93	0	53	54	3	0	41	1.16
52009034--52009120	40	2.2	39	83	6	111	27	19	17	35	1.94
52009047--52009141	40	2.4	40	96	0	172	25	20	18	35	1.95
52012751--52013447	27	25.8	27	84	4	699	26	21	10	41	1.85
52012751--52013447	81	8.6	81	88	3	857	26	21	10	41	1.85
52013464--52013620	81	1.9	81	82	5	192	33	22	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52013451--52013647	27	7.3	27	78	4	146	34	20	19	24	1.96
52013452--52013643	54	3.6	54	80	0	206	34	20	20	25	1.96
52013846--52013928	27	3.1	26	87	5	112	19	21	21	37	1.94
52014016--52014074	22	2.7	22	81	0	64	20	25	22	32	1.98
52014239--52014312	27	2.8	27	85	6	89	17	24	21	36	1.95
52014430--52014616	6	30.8	6	76	16	181	19	17	14	48	1.82
52014430--52014616	85	2.2	85	98	0	356	19	17	14	48	1.82
52014430--52014616	30	6.4	30	85	11	262	19	17	14	48	1.82
52016589--52017204	27	22.8	27	83	3	553	27	21	9	41	1.84
52016589--52017204	54	11.4	54	83	4	625	27	21	9	41	1.84
52016581--52017204	81	7.7	81	84	4	668	28	21	9	41	1.84
52017209--52017430	27	8.2	27	87	0	255	35	17	19	27	1.95
52017630--52017712	27	3.1	26	87	5	112	19	21	21	37	1.94
52017800--52017858	22	2.7	22	81	0	64	20	25	22	32	1.98
52018023--52018096	27	2.8	27	85	6	89	17	24	21	36	1.95
52018214--52018315	6	16.8	6	78	13	111	19	17	14	48	1.82
52018214--52018315	30	3.4	30	93	1	168	19	17	14	48	1.82
52021347--52021372	11	2.4	11	100	0	52	69	0	0	30	0.89
52023596--52023686	40	2.3	40	86	0	128	47	6	21	24	1.75
52024237--52024293	17	3.4	17	95	0	96	15	36	24	22	1.94
52025074--52025112	8	4.8	8	83	3	51	38	5	2	53	1.37
52025126--52025201	27	2.8	27	76	7	75	72	7	17	2	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52027180--52027224	21	2.1	21	83	0	54	11	31	33	24	1.90
52031142--52031369	46	5.0	46	92	1	350	39	14	23	21	1.91
52032445--52032478	17	2.0	17	100	0	68	47	11	5	35	1.65
52032384--52032570	95	2.0	95	98	0	365	39	12	14	33	1.85
52034332--52034363	12	2.7	12	95	0	55	43	3	40	12	1.58
52043673--52043704	3	10.7	3	100	0	64	65	0	0	34	0.93
52045845--52046395	183	3.0	183	94	0	940	29	20	24	25	1.99
52051478--52051658	6	29.3	6	70	17	104	49	13	17	19	1.80
52051486--52051593	37	2.9	37	81	4	128	50	12	17	20	1.78
52051499--52051629	31	4.2	31	76	11	124	49	13	17	19	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172