genome.fa.s10.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  155  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50791298--50791488	18	10.6	18	76	10	149	34	12	16	37	1.86
50791286--50791568	36	7.6	36	70	14	128	34	12	15	36	1.86
50791286--50791476	72	2.7	72	80	6	183	34	12	15	37	1.86
50791526--50791581	18	3.2	18	76	2	51	35	10	14	39	1.81
50795655--50796622	46	21.0	46	89	0	1400	38	14	25	21	1.91
50795661--50796622	138	7.0	138	98	0	1784	38	14	25	21	1.91
50796903--50796935	17	2.0	17	88	5	50	51	0	12	36	1.39
50800652--50800717	21	3.1	21	84	0	78	34	25	24	15	1.94
50801110--50801167	15	3.8	15	88	2	89	51	12	0	36	1.39
50802430--50802471	5	8.2	5	97	2	75	57	0	0	42	0.99
50802494--50802522	8	3.6	8	100	0	58	62	0	0	37	0.96
50809232--50809512	140	2.0	140	98	0	544	25	17	19	37	1.94
50827732--50827771	20	2.0	20	85	0	53	27	12	12	47	1.77
50845003--50845041	20	2.0	20	84	0	51	46	7	7	38	1.61
50848743--50848802	29	2.1	29	84	6	77	35	6	21	36	1.80
50852731--50852773	21	2.0	23	86	9	63	37	0	2	60	1.10
50857810--50857879	16	4.4	16	90	0	86	35	35	0	28	1.58
50865034--50865073	21	2.0	20	85	5	53	47	2	2	47	1.29
50866650--50866692	22	2.0	22	90	9	70	39	0	0	60	0.97
50868811--50868848	17	2.4	16	86	8	51	34	5	10	50	1.59
50873161--50873283	54	2.3	54	82	2	149	21	18	37	22	1.94
50874675--50874699	12	2.1	12	100	0	50	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50877260--50877303	20	2.2	20	84	12	54	27	13	13	45	1.81
50884712--50884752	21	2.0	21	90	0	64	19	29	21	29	1.98
50888811--50888883	36	2.0	36	100	0	146	41	23	13	21	1.89
50891483--50891531	24	2.0	24	100	0	98	55	0	8	36	1.30
50897223--50897315	31	3.2	31	61	22	74	47	25	11	15	1.79
50897223--50897332	56	2.0	56	94	1	195	48	25	10	15	1.78
50897505--50897565	29	2.1	30	93	3	106	59	13	3	24	1.49
50897852--50897992	70	2.0	70	98	0	273	34	26	19	19	1.96
50897973--50898034	30	2.1	30	93	0	106	56	11	3	29	1.50
50909197--50909238	21	2.1	20	86	8	59	50	11	4	33	1.60
50916286--50916348	29	2.2	28	81	13	67	42	3	3	50	1.34
50925266--50925486	84	2.6	86	81	4	223	39	16	7	37	1.76
50925306--50925486	87	2.1	84	82	8	213	38	16	7	37	1.78
50925509--50925551	14	3.1	14	79	0	50	67	0	4	27	1.10
50925593--50925667	38	2.0	38	86	5	107	62	2	2	32	1.23
50926886--50926984	46	2.1	47	94	3	173	35	7	9	48	1.62
50927310--50927356	23	2.1	22	88	4	67	74	2	8	14	1.15
50929059--50929111	4	13.2	4	87	0	61	26	7	0	66	1.18
50929533--50929662	24	5.4	24	73	12	97	30	5	4	59	1.40
50929533--50929708	26	7.3	22	70	17	95	28	5	4	60	1.39
50929533--50929621	46	2.0	44	86	4	124	29	2	5	62	1.30
50930610--50930725	3	39.0	3	75	5	83	56	5	7	30	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50934120--50934173	21	2.6	21	80	17	67	44	0	0	55	0.99
50934122--50934174	27	2.0	27	85	7	72	43	0	0	56	0.99
50940000--50940054	28	1.9	29	85	3	76	63	3	25	7	1.37
50940815--50940860	24	1.9	24	86	8	67	15	23	21	39	1.92
50943938--50943963	6	4.3	6	100	0	52	84	0	0	15	0.62
50955619--50955661	22	2.0	22	95	0	77	39	18	23	18	1.92
50964804--50964898	45	2.1	45	96	1	174	32	10	4	52	1.55
50966933--50967010	25	3.2	24	89	5	113	62	29	3	3	1.30
50966933--50967010	24	3.2	24	87	3	113	62	29	3	3	1.30
50967251--50967275	13	1.9	13	100	0	50	12	0	0	88	0.53
50977470--50978810	72	18.5	72	94	1	2250	29	17	22	30	1.96
50982252--50982311	22	2.7	23	71	10	61	66	0	1	31	1.01
50982306--50982349	16	2.6	17	82	13	56	25	0	0	75	0.81
50983040--50983094	23	2.4	24	90	9	96	12	50	16	20	1.77
50984135--50984180	23	2.0	23	83	8	58	28	6	0	65	1.17
50984133--50984233	3	34.3	3	69	21	63	29	4	1	63	1.26
50984260--50984286	6	4.5	6	100	0	54	48	0	0	51	1.00
50984438--50984590	52	3.2	52	68	25	161	32	6	10	50	1.62
50984407--50984590	93	2.0	93	97	0	350	31	5	10	52	1.60
50990166--50990206	21	1.9	22	90	5	66	24	7	2	65	1.30
50990733--50990975	131	1.9	130	81	3	299	37	15	13	33	1.87
50991600--50991627	5	5.6	5	100	0	56	82	0	0	17	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50997346--50997373	5	5.6	5	100	0	56	82	0	0	17	0.68
51006862--51006893	13	2.5	13	94	0	55	50	0	6	43	1.27
51008982--51009015	11	3.0	11	83	8	50	79	0	17	2	0.86
51008982--51009016	12	3.0	12	87	4	54	80	0	17	2	0.84
51009690--51009812	3	39.7	3	75	6	95	31	6	0	61	1.21
51009719--51009814	12	7.9	12	81	2	111	30	9	0	60	1.28
51009692--51009788	49	2.0	49	84	8	126	30	6	0	62	1.19
51010537--51010572	13	2.8	14	84	16	51	27	25	0	47	1.52
51010524--51010564	18	2.2	19	87	12	59	29	24	0	46	1.53
51010687--51010821	39	3.4	38	71	8	92	28	28	19	23	1.98
51011061--51011099	18	2.1	19	90	4	62	48	10	0	41	1.37
51012413--51012471	5	11.0	5	80	12	64	55	1	0	42	1.09
51012412--51012479	17	3.7	18	77	14	66	52	1	0	45	1.09
51014603--51014633	9	3.6	9	95	4	55	54	0	0	45	0.99
51014600--51014633	13	2.9	11	84	16	50	55	0	0	44	0.99
51014600--51014665	24	2.8	24	77	6	73	51	3	3	42	1.32
51014691--51014725	18	1.9	18	100	0	70	62	0	0	37	0.95
51014842--51014894	16	3.5	15	80	7	54	50	7	1	39	1.41
51014928--51014977	23	2.1	24	85	3	66	58	8	2	32	1.39
51014923--51014967	21	2.2	20	88	4	63	53	8	2	35	1.45
51014940--51015003	27	2.5	24	80	14	67	57	4	3	34	1.35
51015305--51015334	15	2.0	15	100	0	60	53	0	13	33	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51015682--51015724	22	2.0	22	86	9	61	60	4	2	32	1.30
51018889--51018915	12	2.2	12	100	0	54	51	7	0	40	1.30
51019847--51019976	25	5.2	25	84	2	140	31	20	26	20	1.98
51036949--51037014	20	3.3	20	83	8	82	36	1	3	59	1.22
51046153--51046303	43	3.5	43	81	8	155	29	26	18	25	1.98
51057177--51057429	132	1.9	133	96	0	472	26	20	19	33	1.96
51059279--51059311	17	2.1	16	88	11	50	30	0	0	69	0.88
51059358--51059416	21	2.8	22	80	7	61	22	0	8	69	1.15
51059387--51059436	26	2.0	24	88	7	73	30	0	6	64	1.18
51060077--51060132	22	2.5	22	80	11	78	35	10	0	53	1.36
51066422--51066477	22	2.5	22	80	11	78	35	10	0	53	1.36
51075430--51075460	16	1.9	16	93	0	53	29	16	12	41	1.85
51077383--51077423	21	2.0	21	90	0	64	19	29	21	29	1.98
51080222--51080252	16	1.9	16	93	0	53	29	16	12	41	1.85
51082161--51082221	30	2.0	30	100	0	122	37	13	16	32	1.87
51082689--51082875	99	1.9	99	93	0	320	42	14	20	21	1.88
51084384--51084451	25	2.7	26	76	19	81	58	7	2	30	1.40
51085563--51085594	16	2.1	16	88	11	50	59	18	0	21	1.38
51088276--51088314	19	2.1	19	90	4	62	74	7	7	10	1.22
51091829--51091881	25	2.1	25	82	0	61	18	26	5	49	1.70
51093803--51093865	31	2.0	31	87	0	90	46	38	1	14	1.54
51095155--51095223	26	2.7	25	78	14	70	33	10	1	55	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51103959--51104082	53	2.4	53	89	4	180	25	16	29	29	1.97
51111311--51111466	53	3.0	53	83	4	183	27	15	26	30	1.96
51116335--51116426	46	2.0	46	93	4	159	41	15	20	22	1.90
51117313--51117506	64	3.0	64	87	3	248	25	19	22	32	1.97
51117523--51117711	75	2.5	75	79	3	202	30	17	21	30	1.97
51118275--51118368	31	3.0	31	92	0	152	46	38	1	13	1.51
51120168--51120282	44	2.6	44	81	2	131	36	13	21	28	1.91
51122064--51122104	21	1.9	22	85	14	59	29	19	0	51	1.47
51122224--51122334	3	37.7	3	75	7	84	30	8	0	60	1.32
51122233--51122303	20	3.6	19	77	17	74	28	7	0	64	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172