genome.fa.s10.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  48  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15548161--15548338	27	6.6	27	83	3	205	26	15	28	29	1.96
15548162--15548317	82	1.9	81	88	3	233	26	15	28	29	1.96
15548158--15548338	82	2.2	81	83	2	229	27	15	27	29	1.96
15551807--15551967	29	5.6	29	89	2	225	40	13	26	19	1.88
15551807--15551986	59	3.1	58	83	3	236	40	14	25	20	1.90
15551807--15551975	88	1.9	87	86	1	239	41	12	26	19	1.87
15567187--15567338	56	2.7	56	100	0	304	24	22	9	44	1.82
15571945--15571983	20	1.9	21	89	5	62	43	0	12	43	1.42
15595878--15595979	20	5.1	20	75	4	89	42	20	26	10	1.85
15599155--15599256	20	5.1	20	75	4	89	42	20	26	10	1.85
15602724--15602864	40	3.5	40	83	0	165	23	31	14	30	1.95
15602731--15602786	21	2.8	21	71	15	55	19	37	16	26	1.92
15602724--15603010	41	7.0	41	83	2	310	20	29	16	32	1.95
15602800--15602867	21	3.3	21	66	12	59	23	33	13	29	1.93
15602724--15603010	82	3.5	82	84	3	348	20	29	16	32	1.95
15603540--15603653	27	4.2	27	81	6	115	47	18	15	18	1.83
15603797--15603848	26	2.0	26	96	0	95	13	23	25	38	1.91
15603802--15603867	26	2.5	26	85	0	78	15	21	21	42	1.89
15603978--15604073	28	3.4	28	81	8	113	23	22	23	29	1.99
15603982--15604065	30	2.9	29	87	3	116	25	23	23	27	2.00
15605634--15605680	24	1.9	24	86	4	67	36	0	38	25	1.56
15606312--15606668	27	13.3	27	78	7	300	42	18	19	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15606843--15606919	26	3.0	26	84	0	91	12	19	24	42	1.86
15607030--15607114	33	2.7	32	84	10	97	24	24	25	24	2.00
15609321--15609352	16	2.0	16	93	0	55	31	3	28	37	1.73
15613014--15613228	59	3.7	58	79	6	211	34	15	22	27	1.94
15616050--15616093	21	2.1	21	100	0	88	54	9	9	27	1.62
15640718--15640789	36	2.0	36	81	5	83	37	27	9	25	1.87
15640732--15640807	36	2.1	36	85	4	100	34	28	9	27	1.88
15641580--15641608	12	2.5	12	94	5	51	62	10	3	24	1.43
15647426--15647618	51	3.8	51	78	6	169	24	15	27	31	1.96
15647434--15647618	101	1.8	101	85	8	259	24	16	27	31	1.96
15647844--15647875	16	2.0	16	93	0	55	59	0	15	25	1.36
15656334--15656408	21	3.7	19	72	13	62	68	1	21	9	1.26
15656366--15656451	45	1.9	45	83	4	111	61	0	26	11	1.30
15658219--15658266	20	2.4	20	89	6	71	25	31	16	27	1.97
15658218--15658266	10	4.9	10	78	9	55	24	30	16	28	1.96
15677047--15677237	51	3.8	51	75	12	178	24	16	26	32	1.96
15686991--15687197	40	5.2	40	84	6	260	27	28	22	22	1.99
15690245--15690308	27	2.4	27	97	0	119	26	28	4	40	1.76
15690846--15690872	14	1.9	14	100	0	54	70	0	0	29	0.88
15690911--15690940	5	6.0	5	100	0	60	80	0	0	20	0.72
15691166--15691196	15	2.1	15	100	0	62	41	19	6	32	1.77
15703045--15703109	26	2.5	26	94	0	112	24	32	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15706301--15706393	30	3.1	29	76	11	89	34	24	1	39	1.63
15710625--15710842	46	4.7	46	81	11	239	22	29	20	27	1.98
15710673--15710844	93	1.9	92	86	8	251	22	29	20	27	1.99
15712302--15712396	42	2.2	43	80	9	106	24	14	26	34	1.94
15712367--15712452	43	2.0	43	83	0	109	25	18	27	27	1.98
15716395--15716439	15	3.0	15	90	0	72	13	17	13	55	1.69
15716395--15716453	30	2.0	30	82	0	73	15	18	11	54	1.71
15718120--15719027	138	6.6	138	98	0	1732	26	20	29	23	1.99
15722490--15722573	43	2.0	43	90	0	132	22	17	30	28	1.97
15725778--15725953	40	4.4	39	86	6	221	24	22	27	25	2.00
15729316--15729372	25	2.3	25	87	0	78	24	28	15	31	1.96
15732500--15732537	20	1.9	20	89	10	60	21	2	23	52	1.59
15734904--15735006	51	2.0	52	94	1	181	34	7	27	30	1.85
15750353--15750388	18	1.9	18	88	5	54	22	25	0	52	1.47
15759664--15759761	50	2.0	50	97	0	187	23	23	13	39	1.90
15772384--15772421	19	2.0	20	85	15	53	39	23	0	36	1.55
15772646--15772818	46	3.7	46	73	13	156	30	25	21	22	1.99
15772651--15772821	93	1.8	93	87	0	252	29	26	21	22	1.99
15773370--15773521	76	2.0	76	96	0	277	25	20	15	38	1.92
15773837--15773931	49	2.0	49	89	4	149	31	23	7	37	1.82
15778552--15778639	44	2.0	44	100	0	176	36	13	22	27	1.92
15779952--15779989	19	2.0	20	85	15	53	36	0	23	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15780255--15780413	79	2.0	80	95	1	284	30	5	25	39	1.77
15782554--15782601	25	1.9	25	82	0	60	72	2	4	20	1.11
15788131--15788314	50	3.7	49	81	7	192	26	19	27	27	1.99
15791314--15791371	15	3.9	15	78	17	75	10	13	13	62	1.55
15793040--15793884	100	8.4	100	99	0	1663	25	17	28	28	1.97
15806958--15806988	15	2.1	15	100	0	62	35	19	12	32	1.90
15809888--15810145	79	3.2	80	83	5	294	26	20	26	25	1.99
15809890--15810112	119	1.9	120	86	4	326	25	21	27	26	1.99
15809888--15810112	40	5.7	40	85	3	285	25	21	27	26	1.99
15820389--15820432	20	2.1	21	87	4	63	29	6	0	63	1.20
15827457--15827508	25	2.1	24	96	3	95	36	3	38	21	1.72
15828909--15829019	27	4.1	27	81	7	120	17	22	23	36	1.94
15828909--15829019	54	2.1	53	86	1	150	17	22	23	36	1.94
15834524--15835063	181	3.0	179	87	3	778	20	24	25	30	1.99
15835510--15835625	58	2.0	58	89	0	178	29	21	24	25	1.99
15837985--15838026	20	2.1	20	100	0	84	23	16	30	28	1.96
15842547--15842698	43	3.6	43	82	2	182	19	28	32	19	1.96
15842672--15844524	43	43.5	43	79	4	1625	17	30	31	20	1.96
15844606--15844653	24	2.1	22	92	7	78	12	27	39	20	1.89
15867139--15867253	58	2.0	59	84	5	153	34	20	20	25	1.96
15871252--15871323	35	2.1	35	86	0	99	36	9	25	29	1.88
15871793--15872656	43	20.3	43	79	6	742	18	30	30	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15871793--15872655	85	10.1	86	79	5	774	19	30	30	19	1.96
15871795--15872640	213	4.0	214	78	5	813	19	30	30	19	1.96
15877761--15878315	182	3.0	183	90	3	827	19	24	25	30	1.98
15885325--15885354	15	2.0	15	100	0	60	20	13	40	26	1.89
15885327--15885365	15	2.5	15	87	8	51	17	15	46	20	1.84
15890748--15891905	85	13.3	86	74	11	633	16	30	32	20	1.95
15890725--15892032	43	30.2	42	75	12	444	16	30	32	20	1.95
15891135--15891270	69	2.0	69	88	0	200	21	27	29	21	1.98
15891241--15892032	43	18.6	43	83	5	864	15	31	33	19	1.94
15891241--15892031	127	6.2	128	84	4	881	15	31	33	19	1.94
15891241--15892032	85	9.3	86	82	6	843	15	31	33	19	1.94
15895620--15896244	43	14.7	43	83	4	671	17	32	32	18	1.94
15910380--15910604	42	5.3	42	76	13	185	16	27	34	21	1.95
15910422--15911559	43	26.8	43	83	5	1239	15	33	32	18	1.92
15911270--15911618	43	8.2	43	76	10	157	16	30	34	18	1.93
15923636--15924345	43	16.7	43	78	4	602	17	30	32	19	1.95
15923720--15924345	85	7.4	85	79	6	567	17	31	31	18	1.95
15923636--15924345	128	5.6	129	79	6	617	17	30	32	19	1.95
15939021--15939067	24	2.0	24	91	0	76	6	34	38	21	1.79
15939615--15939693	24	3.3	24	82	8	90	6	36	35	21	1.79
15939998--15940815	42	19.3	43	84	4	842	17	32	31	18	1.94
15939998--15940815	85	9.6	85	81	5	834	17	32	31	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15949330--15949401	24	3.0	24	83	0	90	6	36	36	20	1.80
15949732--15949837	42	2.5	42	83	7	119	17	27	33	20	1.96
15949699--15950574	43	20.6	43	80	4	773	17	31	32	18	1.94
15949818--15950482	128	5.2	129	82	4	803	17	32	32	17	1.93
15949699--15950574	85	10.3	85	78	6	760	17	31	32	18	1.94
15949859--15950554	128	5.4	128	80	8	591	16	32	32	17	1.93
15949859--15950581	171	4.2	171	81	5	574	17	31	32	17	1.94
15965115--15965191	24	3.2	24	79	0	91	9	37	32	20	1.84
15965470--15965576	42	2.6	42	83	4	119	17	27	33	21	1.96
15965555--15966226	43	15.8	43	86	2	804	16	34	32	16	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172