genome.fa.s10.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  135  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44510529--44510632	48	2.1	49	81	10	133	30	33	14	21	1.93
44512532--44512616	44	1.9	44	83	4	109	28	28	12	30	1.93
44512531--44512625	44	2.2	43	79	9	102	31	25	14	28	1.95
44512386--44512895	176	2.9	176	86	2	711	27	25	17	30	1.97
44525107--44525150	22	1.9	22	86	9	61	70	0	9	20	1.14
44525104--44525158	24	2.3	24	75	6	58	74	0	9	16	1.06
44525152--44525214	19	3.5	19	72	25	64	73	6	6	14	1.24
44528271--44528330	30	2.0	30	96	0	111	55	16	16	11	1.70
44530655--44530738	26	3.2	26	96	0	150	33	4	25	36	1.77
44536855--44537141	137	2.1	137	94	0	502	23	18	25	33	1.97
44540023--44540065	23	1.9	22	90	4	68	72	0	23	4	1.04
44543005--44543053	23	2.1	24	81	11	57	42	8	4	44	1.53
44543732--44543767	5	7.0	5	87	6	54	25	0	0	75	0.81
44543729--44543759	16	1.9	16	100	0	62	25	0	0	74	0.82
44549468--44549506	18	2.2	18	85	0	51	20	10	17	51	1.74
44553322--44553372	25	2.0	25	92	0	84	35	11	23	29	1.90
44554259--44554499	3	80.7	3	72	16	137	63	2	4	29	1.28
44554396--44554494	23	4.3	24	73	19	70	64	3	2	30	1.20
44558164--44558497	97	3.5	95	78	8	361	37	20	10	31	1.87
44565416--44565549	64	2.1	64	84	0	169	37	25	20	17	1.93
44565709--44566867	577	2.0	577	97	0	2185	29	11	19	39	1.87
44568851--44568914	26	2.4	27	84	5	85	32	9	3	54	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44568953--44569002	19	2.4	21	77	16	59	32	10	0	58	1.31
44569215--44569418	52	3.9	52	100	0	408	20	13	11	54	1.70
44570128--44570161	17	2.0	17	94	0	59	55	0	5	38	1.24
44570788--44570923	24	5.7	24	82	3	150	22	11	30	35	1.90
44570788--44570924	72	1.9	72	87	0	202	22	11	30	35	1.90
44570788--44570941	72	2.1	72	84	0	191	23	11	29	35	1.90
44577069--44577102	17	2.0	17	94	0	59	55	0	5	38	1.24
44583717--44585254	768	2.0	768	99	0	3049	36	8	21	34	1.83
44585410--44585545	24	5.7	24	84	3	159	22	12	30	34	1.91
44585410--44585546	72	1.9	72	86	0	193	22	12	30	34	1.91
44585410--44585563	72	2.1	72	82	0	182	23	12	29	34	1.91
44589342--44589667	131	2.5	130	88	2	480	35	20	17	26	1.95
44591473--44591540	30	2.3	28	79	18	75	38	1	0	60	1.06
44591497--44591541	10	4.5	10	79	20	58	33	2	0	64	1.06
44591467--44591541	23	3.3	23	75	14	75	36	1	0	62	1.04
44595120--44595237	45	2.6	46	81	10	138	27	22	21	27	1.99
44595208--44595592	87	4.4	87	81	2	389	22	24	21	31	1.98
44595422--44595556	43	3.1	42	65	14	112	20	25	20	34	1.96
44595208--44595569	176	2.1	175	83	4	462	22	24	20	32	1.98
44595405--44595538	44	3.1	43	64	14	112	23	23	21	31	1.98
44606966--44607298	131	2.6	129	84	4	458	35	18	18	27	1.94
44616912--44616989	32	2.5	32	89	6	126	42	3	6	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44619668--44619712	21	2.2	21	84	7	58	11	13	4	71	1.29
44620946--44621049	55	1.9	55	86	4	147	25	25	28	20	1.99
44622048--44622101	24	2.2	24	96	0	99	14	20	7	57	1.61
44627331--44627596	103	2.6	104	90	3	419	19	20	29	29	1.97
44631308--44631339	2	16.0	2	93	0	55	50	3	0	46	1.17
44631500--44631585	43	2.0	43	100	0	172	20	9	18	51	1.74
44635769--44635832	30	2.1	30	100	0	128	31	31	6	31	1.82
44648882--44648915	18	1.9	17	88	5	50	64	0	2	32	1.08
44649018--44649068	21	2.7	18	82	11	57	64	1	3	29	1.22
44650808--44651551	206	3.6	206	90	0	1141	28	21	18	30	1.97
44661726--44661859	57	2.4	57	97	0	250	29	22	8	39	1.84
44663221--44663261	18	2.3	19	79	12	50	48	0	2	48	1.14
44664109--44664149	5	8.4	5	94	5	75	21	0	0	78	0.76
44664109--44664149	14	2.8	15	92	7	75	21	0	0	78	0.76
44664109--44664147	19	2.1	19	100	0	78	20	0	0	79	0.73
44664710--44664741	3	10.7	3	100	0	64	68	0	0	31	0.90
44666138--44666172	16	2.2	16	89	0	52	22	8	2	65	1.34
44669073--44669116	19	2.2	20	92	4	72	43	31	9	15	1.79
44669607--44669655	11	4.3	11	82	10	62	34	0	6	59	1.22
44670902--44671097	24	8.2	24	93	2	324	29	19	19	31	1.97
44670902--44671097	49	4.1	48	93	3	324	29	19	19	31	1.97
44670902--44671097	73	2.7	73	93	2	344	29	19	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44671149--44671212	20	3.2	20	93	0	110	32	20	12	34	1.90
44671149--44671201	11	5.2	11	69	17	51	32	18	13	35	1.90
44671249--44671296	25	1.9	25	86	0	69	25	16	25	33	1.96
44673754--44673816	31	2.1	31	90	3	101	26	3	12	57	1.51
44674671--44674964	27	11.0	27	83	5	312	38	21	9	30	1.86
44674991--44675177	27	7.0	26	84	3	203	35	19	19	25	1.95
44674992--44675205	27	8.0	26	80	6	171	35	19	19	26	1.95
44675632--44675696	22	3.0	22	75	8	69	20	23	23	33	1.97
44675878--44675937	26	2.3	27	88	2	86	20	18	21	40	1.92
44675880--44675962	27	3.1	27	84	3	89	21	20	19	38	1.93
44676083--44676182	6	16.2	6	75	13	78	21	19	13	47	1.82
44676083--44676146	25	2.6	25	89	0	92	20	20	14	45	1.85
44676083--44676182	31	3.2	30	72	16	96	21	19	13	47	1.82
44676101--44676182	37	2.2	37	84	0	101	21	19	12	46	1.82
44677785--44677941	27	5.9	26	85	5	181	24	21	17	35	1.95
44677782--44677951	54	3.1	54	81	5	209	25	20	17	37	1.94
44677785--44677941	81	2.0	80	88	3	235	24	21	17	35	1.95
44677988--44678218	27	8.6	26	76	7	180	30	9	21	38	1.85
44677998--44678218	54	4.1	53	77	2	201	31	9	20	38	1.84
44677997--44678218	80	2.8	80	81	3	259	31	9	20	38	1.85
44679509--44679626	52	2.3	51	85	1	155	34	15	22	27	1.94
44680016--44680135	45	2.7	45	86	3	170	35	18	23	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44680107--44680265	46	3.5	45	92	3	246	45	13	22	18	1.84
44680391--44680433	13	3.3	13	76	0	50	34	2	25	37	1.69
44680391--44680485	26	3.6	26	75	13	79	38	4	21	35	1.73
44693793--44694392	44	13.4	43	72	9	336	31	17	20	30	1.96
44693793--44694392	89	6.7	89	74	8	418	31	17	20	30	1.96
44693796--44694263	133	3.5	133	86	2	604	31	17	20	29	1.96
44695640--44695701	31	2.0	31	100	0	124	41	32	9	16	1.80
44695808--44695904	40	2.5	38	72	6	95	34	35	12	18	1.88
44700038--44700067	15	2.0	15	93	0	51	70	6	23	0	1.11
44700551--44700601	22	2.2	24	83	13	63	60	29	1	7	1.36
44701708--44701904	3	66.3	3	71	14	124	29	8	1	60	1.34
44702039--44702072	15	2.3	15	89	0	50	35	11	0	52	1.38
44705747--44706010	47	5.6	47	91	0	404	28	15	25	31	1.95
44714136--44714187	16	3.3	15	76	10	50	63	0	32	3	1.12
44714132--44714191	21	2.9	20	71	22	52	63	0	33	3	1.11
44721501--44721552	15	3.5	15	75	15	54	32	1	0	65	1.04
44721651--44721693	22	2.0	23	82	17	56	55	2	4	37	1.33
44721703--44721739	19	1.9	19	100	0	74	56	0	0	43	0.99
44722145--44722182	19	2.0	20	89	5	60	55	2	0	42	1.14
44723056--44723134	38	2.1	38	97	0	149	37	16	21	24	1.93
44725677--44725784	26	4.2	26	93	0	189	36	24	7	32	1.83
44730302--44730370	31	2.2	32	82	10	88	27	14	17	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44732635--44732664	15	2.1	14	93	6	51	30	0	0	70	0.88
44732635--44732664	10	2.9	10	95	5	51	30	0	0	70	0.88
44732715--44732774	5	12.4	5	76	13	63	40	1	0	58	1.08
44732715--44732780	34	1.9	35	90	9	109	39	3	0	57	1.14
44734294--44734359	26	2.5	26	92	2	105	59	6	0	34	1.22
44734805--44734837	5	6.8	5	93	6	59	18	0	0	81	0.68
44734805--44734841	15	2.6	14	88	12	58	18	0	0	81	0.70
44739243--44739269	14	1.9	14	100	0	54	18	0	0	81	0.69
44751023--44751068	23	2.0	23	100	0	92	26	17	21	34	1.95
44759865--44759891	13	2.1	13	100	0	54	14	37	33	14	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172