genome.fa.s10.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  43  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13705315--13705604	75	3.9	74	74	12	225	37	21	14	26	1.92
13705285--13705604	100	3.2	99	78	8	369	37	20	14	26	1.92
13712251--13712329	39	2.0	39	97	0	149	50	2	5	41	1.38
13719943--13720031	46	1.9	47	86	2	126	61	6	3	28	1.37
13719973--13720034	22	2.8	21	75	7	61	62	4	3	29	1.31
13720281--13720368	27	3.3	27	76	7	74	57	6	3	31	1.41
13720386--13720463	24	3.2	24	75	7	84	60	3	6	29	1.39
13720385--13720476	26	3.6	25	75	7	96	60	3	5	30	1.35
13722099--13722223	44	2.8	44	86	0	142	26	23	21	28	1.99
13722333--13722503	44	3.9	44	77	1	146	30	20	16	32	1.95
13730132--13730178	19	2.5	20	86	6	62	46	6	21	25	1.74
13733591--13733709	26	4.6	27	67	13	79	60	5	5	27	1.43
13733666--13733804	46	3.0	45	79	5	143	63	5	4	27	1.34
13734013--13734063	26	2.0	26	84	0	66	60	3	5	29	1.38
13734040--13734127	27	3.3	27	75	7	74	61	5	3	29	1.35
13734144--13734204	24	2.5	24	78	5	68	59	4	4	31	1.40
13739297--13739386	46	2.0	46	97	0	171	28	22	8	40	1.84
13744806--13744896	40	2.3	38	81	7	119	32	31	20	14	1.93
13751944--13752034	40	2.3	38	78	7	101	34	31	17	16	1.92
13757903--13757928	13	2.0	13	100	0	52	84	0	0	15	0.62
13761655--13761679	5	5.0	5	100	0	50	60	0	0	40	0.97
13761974--13762149	90	2.0	89	91	1	289	39	14	19	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13762414--13762735	159	2.0	159	99	0	635	30	18	13	37	1.89
13765532--13765665	72	1.9	72	88	3	207	34	17	16	31	1.93
13771775--13771824	19	2.6	19	83	3	55	76	2	0	22	0.89
13771781--13771824	5	9.0	5	85	5	54	77	2	0	20	0.88
13779800--13779870	24	3.2	24	66	22	64	40	12	22	23	1.88
13779800--13779881	42	2.0	42	92	0	137	42	14	19	23	1.88
13781383--13781446	3	20.7	3	80	15	51	28	1	4	65	1.21
13781379--13781436	30	2.0	30	84	15	79	27	1	3	67	1.17
13781382--13781447	26	2.7	24	76	21	66	27	1	4	66	1.20
13781738--13781787	25	2.0	25	96	0	91	30	12	22	36	1.90
13786364--13786408	23	2.0	23	82	8	56	37	8	13	40	1.76
13793133--13793303	86	2.0	86	98	0	333	42	9	23	23	1.84
13793585--13793722	59	2.3	59	100	0	276	25	16	26	31	1.97
13794809--13794950	74	1.9	74	82	0	176	19	24	30	25	1.98
13795467--13795518	6	8.5	6	74	4	50	15	3	5	75	1.14
13795464--13795517	12	4.5	12	79	6	56	16	3	5	74	1.16
13812314--13812575	39	6.7	40	88	7	337	24	27	22	25	2.00
13815715--13815890	45	4.0	45	89	6	245	23	28	22	25	1.99
13818030--13818061	3	10.7	3	93	0	55	31	0	3	65	1.08
13818382--13818451	25	2.7	26	77	12	72	60	2	0	37	1.12
13818829--13818876	23	2.1	23	88	0	69	54	2	2	41	1.24
13818853--13818973	64	2.0	60	82	12	147	57	3	6	33	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13824655--13824699	22	2.0	22	95	0	81	48	8	15	26	1.74
13829669--13829742	36	2.1	36	92	5	123	37	5	13	43	1.67
13830780--13830813	13	2.6	13	86	13	52	58	2	2	35	1.28
13840825--13840878	26	2.1	26	82	6	65	35	3	5	55	1.41
13844598--13844687	44	2.0	44	89	4	137	27	31	14	26	1.95
13844322--13844723	178	2.3	177	91	0	633	27	28	17	26	1.98
13845414--13845451	14	2.9	13	81	11	51	18	13	10	57	1.63
13861775--13861826	27	2.0	26	84	3	68	34	21	26	17	1.95
13865281--13865318	20	1.9	20	94	0	67	18	28	18	34	1.95
13874684--13874891	113	1.8	113	89	2	328	37	16	11	34	1.85
13876390--13876505	51	2.3	51	82	10	148	15	21	17	45	1.85
13906720--13906897	27	6.6	27	83	3	205	26	15	28	29	1.96
13906721--13906876	82	1.9	81	88	3	233	26	15	28	29	1.96
13906717--13906897	82	2.2	81	83	2	229	27	15	27	29	1.96
13917851--13918053	3	68.7	3	69	13	127	60	0	7	31	1.32
13918216--13918420	3	69.7	3	68	9	91	59	1	7	30	1.37
13918220--13918274	20	2.8	20	91	0	83	61	1	5	30	1.29
13926685--13926720	14	2.6	14	90	0	63	19	19	8	52	1.70
13932954--13933089	52	2.6	53	80	3	141	24	17	29	28	1.97
13937058--13937125	28	2.3	29	78	14	77	45	0	1	52	1.09
13938755--13938797	17	2.5	17	96	0	77	25	30	20	23	1.99
13938766--13938805	17	2.4	17	91	0	62	27	22	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13941175--13941436	44	5.7	44	73	16	201	22	29	19	28	1.98
13941266--13941394	48	2.7	46	80	11	143	21	27	19	31	1.97
13948626--13948842	44	4.6	48	75	12	193	23	29	19	28	1.98
13948625--13948842	93	2.3	93	93	1	366	22	29	19	27	1.98
13950536--13950847	44	6.7	47	74	13	261	20	30	20	28	1.98
13952346--13952413	34	2.0	34	94	0	118	58	5	17	17	1.57
13953170--13953204	17	2.0	18	88	5	54	82	14	0	2	0.77
13954675--13954699	2	12.5	2	100	0	50	52	48	0	0	1.00
13954760--13954802	20	2.2	20	83	8	52	60	6	6	25	1.48
13956332--13956436	40	2.7	38	86	4	129	34	24	18	22	1.96
13958987--13959046	30	2.0	30	86	0	84	30	23	8	38	1.84
13966519--13966886	184	2.0	184	100	0	736	32	25	12	30	1.92
13967965--13968000	18	2.1	17	89	5	54	30	8	0	61	1.26
13971643--13971702	29	2.1	29	100	0	120	63	3	10	23	1.40
13974314--13974355	16	2.6	16	81	7	50	73	0	4	21	1.01
13974581--13974612	15	2.2	15	94	5	57	53	0	43	3	1.16
13977129--13977171	21	2.0	21	95	0	77	18	37	18	25	1.94
13983888--13983918	12	2.7	12	95	5	55	19	6	0	74	1.03
13990009--13990055	19	2.3	20	82	10	60	36	0	14	48	1.44
13990406--13990688	50	5.6	50	80	4	282	24	18	26	31	1.98
13990406--13990638	101	2.3	102	86	2	317	24	17	26	31	1.97
13990406--13990800	151	2.6	151	82	1	441	25	19	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13992843--13992887	15	3.0	15	83	0	54	13	17	13	55	1.69
13995470--13995554	26	3.3	26	66	18	68	25	11	25	36	1.90
13995471--13995809	50	6.7	50	76	6	292	25	15	27	31	1.95
13995523--13995800	150	1.9	150	86	1	405	25	15	27	31	1.95
13996009--13996040	16	2.0	16	93	0	55	46	0	18	34	1.49
13996367--13996704	180	1.9	180	89	1	534	39	8	19	33	1.81
14004626--14004650	13	1.9	13	100	0	50	60	8	0	32	1.26
14005619--14005693	37	2.0	37	92	0	123	16	24	40	20	1.91
14008229--14008262	17	2.0	17	88	0	50	17	8	20	52	1.71
14014911--14014942	13	2.4	14	85	15	50	71	0	12	15	1.14
14027791--14027860	27	2.5	28	95	2	124	31	28	12	27	1.93
14034456--14034499	20	2.1	21	83	4	54	20	6	15	56	1.62
14039967--14040088	25	4.8	24	71	18	70	31	4	2	62	1.27
14039973--14040066	16	6.1	15	75	16	70	31	4	2	61	1.27
14040016--14040055	17	2.4	17	83	4	55	30	7	0	62	1.23
14040145--14040204	21	3.2	17	78	19	59	31	3	1	63	1.20
14040179--14040213	17	2.2	17	90	10	56	28	5	0	65	1.15
14040474--14040532	17	3.6	16	74	21	59	33	3	0	62	1.12
14049396--14049543	39	3.8	39	86	1	190	29	27	19	23	1.98
14066933--14066962	14	2.1	14	93	0	51	46	36	0	16	1.47
14072936--14073119	40	4.6	41	76	10	186	26	26	22	25	2.00
14074092--14074251	79	2.0	79	97	0	302	40	8	20	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14075748--14075925	27	6.6	26	80	6	169	26	15	28	29	1.96
14075749--14075904	82	1.9	81	85	3	215	26	16	28	28	1.97
14075745--14075925	82	2.2	81	81	2	211	27	16	27	29	1.97
14075830--14075936	27	3.9	27	83	1	79	26	15	28	29	1.96
14086246--14086357	24	4.6	24	74	4	82	26	17	29	25	1.98
14086246--14086380	49	2.8	47	83	8	139	27	17	29	25	1.97
14093789--14093900	24	4.6	24	74	4	82	26	17	29	25	1.98
14093789--14093923	49	2.8	47	83	8	139	27	17	29	25	1.97
14101864--14101965	28	3.6	28	76	9	100	25	28	17	28	1.98
14106412--14106516	28	3.7	28	73	7	86	25	28	16	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172