genome.fa.s10.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  42  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13460168--13460199	10	3.3	10	95	4	57	62	0	6	31	1.20
13460224--13460253	15	2.0	15	93	0	51	40	10	0	50	1.36
13462351--13462395	13	3.3	14	85	11	58	0	22	0	77	0.76
13462361--13462393	14	2.3	15	90	10	52	0	21	0	78	0.75
13462352--13462396	23	1.9	24	82	13	58	0	24	0	75	0.80
13467377--13467406	15	2.0	15	100	0	60	40	0	26	33	1.57
13469240--13469277	20	1.9	20	88	0	58	36	0	10	52	1.36
13473459--13473620	53	3.1	52	83	5	200	41	12	11	33	1.80
13474110--13474300	94	2.1	85	83	10	231	43	17	9	28	1.81
13487777--13487823	22	2.2	21	82	14	53	46	4	10	38	1.58
13490152--13490228	41	1.9	41	84	10	106	29	3	6	59	1.40
13490440--13490501	26	2.4	26	78	10	65	33	3	1	61	1.22
13490417--13490471	16	3.2	16	74	20	58	30	5	0	63	1.17
13490568--13490612	23	2.0	22	86	4	63	33	6	0	60	1.23
13492498--13492538	6	6.5	6	94	2	64	82	0	2	14	0.76
13492502--13492547	12	3.8	12	88	2	56	80	0	6	13	0.89
13492502--13492547	18	2.5	18	85	3	65	80	0	6	13	0.89
13493904--13493954	24	2.2	24	83	16	65	49	1	0	49	1.12
13504205--13504379	46	3.8	45	81	7	208	28	29	21	21	1.99
13504213--13504383	93	1.8	93	93	0	297	27	29	21	21	1.99
13504967--13505079	56	2.0	56	100	0	226	26	24	10	38	1.88
13506889--13506977	30	3.0	30	75	8	83	56	14	17	11	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13506889--13506968	15	5.4	15	79	7	74	57	12	18	11	1.64
13506900--13506977	15	5.2	15	75	9	61	55	14	17	12	1.70
13509914--13510057	46	3.1	45	72	21	120	29	29	19	22	1.98
13512317--13512343	7	3.9	7	100	0	54	55	0	0	44	0.99
13518504--13518584	42	1.9	42	100	0	162	39	6	14	39	1.71
13518499--13518591	42	2.2	42	92	3	159	43	6	12	37	1.69
13518637--13518952	143	2.2	143	93	1	535	34	10	14	40	1.81
13529910--13530079	40	4.3	40	85	0	207	24	30	21	23	1.99
13532574--13532621	22	2.2	22	81	7	53	64	6	0	29	1.18
13533600--13533953	130	2.7	129	79	4	354	44	8	7	39	1.64
13534613--13534656	20	2.2	20	83	4	52	68	6	2	22	1.25
13541528--13541707	49	3.7	49	90	0	261	28	27	18	25	1.98
13546089--13546261	46	3.7	46	75	13	174	23	20	26	30	1.99
13546086--13546256	93	1.8	93	91	0	279	22	21	26	29	1.99
13547937--13547968	13	2.5	13	94	0	55	21	40	31	6	1.78
13548476--13548588	57	2.0	57	98	0	217	38	16	8	36	1.80
13549521--13549696	46	3.8	46	76	12	189	20	19	29	30	1.97
13549518--13549689	93	1.8	93	92	0	290	20	19	29	29	1.97
13552120--13552209	45	2.0	45	88	0	135	28	21	24	25	1.99
13557192--13557367	46	3.8	46	77	12	189	20	20	29	29	1.98
13557189--13557360	93	1.8	93	92	0	290	20	20	29	28	1.98
13565383--13565552	91	1.9	91	88	0	259	32	11	23	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13568420--13568456	18	2.1	18	100	0	74	40	21	10	27	1.86
13570566--13570675	27	4.1	26	87	8	148	37	22	23	16	1.94
13570566--13570675	54	2.0	54	89	3	168	37	22	23	16	1.94
13571886--13571922	12	3.0	12	88	4	56	78	0	21	0	0.75
13571867--13571929	22	2.8	22	78	9	65	69	0	25	4	1.07
13571886--13571929	13	3.5	13	84	12	56	75	0	25	0	0.81
13578810--13578834	4	6.2	4	100	0	50	76	0	0	24	0.80
13582515--13582593	40	2.0	40	82	0	95	30	7	20	41	1.80
13582801--13582909	45	2.4	46	87	4	168	22	20	16	40	1.91
13582784--13582914	45	2.7	51	75	16	150	21	19	17	41	1.90
13582889--13582938	6	8.2	6	86	4	73	18	16	16	50	1.79
13582895--13582957	24	2.6	24	82	9	74	19	15	19	46	1.85
13583452--13583516	28	2.3	29	89	7	107	41	10	9	38	1.72
13589171--13589208	13	2.8	14	84	4	51	76	0	7	15	1.01
13589973--13590059	40	2.2	40	82	0	111	31	5	20	42	1.76
13590262--13590370	45	2.4	45	80	3	130	21	18	18	42	1.90
13590350--13590399	6	8.2	6	86	4	64	18	18	16	48	1.82
13597927--13597951	12	2.1	12	100	0	50	16	16	20	48	1.82
13613481--13613515	12	2.9	12	91	0	52	22	17	51	8	1.72
13620567--13620779	44	4.8	43	68	14	110	26	26	17	29	1.98
13620487--13620960	133	3.6	130	80	8	519	25	25	19	29	1.98
13620922--13621458	177	3.0	177	78	7	597	27	26	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13621358--13621447	44	2.0	44	81	8	103	24	31	17	26	1.97
13621421--13621519	44	2.2	44	94	0	171	28	31	21	19	1.97
13621575--13621754	44	4.1	44	85	3	218	28	26	16	29	1.97
13621149--13621713	222	2.5	221	77	5	627	27	27	17	27	1.98
13621589--13621754	88	1.9	88	87	2	244	27	25	16	30	1.97
13623185--13623241	18	3.3	18	83	13	75	19	0	1	78	0.83
13623164--13623242	27	3.0	25	77	18	79	16	0	3	79	0.87
13623185--13623232	9	5.3	9	95	5	80	20	0	0	79	0.74
13623164--13623242	9	8.9	9	79	8	63	16	0	3	79	0.87
13623775--13623813	15	2.7	14	80	7	51	7	7	2	82	0.94
13628530--13628573	17	2.4	18	85	14	56	75	6	0	18	1.02
13628952--13628976	12	2.1	12	100	0	50	40	36	8	16	1.77
13629736--13629784	12	4.1	12	89	7	57	30	0	0	69	0.89
13629797--13629834	17	2.3	17	90	4	60	28	2	5	63	1.30
13629817--13629856	20	2.0	21	85	5	55	27	12	2	57	1.48
13629752--13629861	3	36.7	3	71	10	73	28	8	3	60	1.43
13629972--13630020	21	2.3	21	78	0	62	28	6	0	65	1.16
13630145--13630175	15	2.1	15	93	0	53	29	6	3	61	1.37
13630155--13630192	18	2.1	18	85	9	51	28	10	2	57	1.45
13633827--13633857	15	2.1	15	93	0	53	58	0	35	6	1.24
13641787--13642371	205	2.9	205	91	1	917	29	18	22	29	1.97
13642489--13642524	13	2.8	13	91	8	56	44	16	30	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13642712--13642736	12	2.1	12	100	0	50	40	36	8	16	1.77
13643500--13643549	12	4.2	12	87	7	59	30	0	2	68	1.01
13643570--13643607	17	2.3	17	90	4	60	28	2	5	63	1.30
13643504--13643608	24	4.6	22	73	10	68	28	3	4	62	1.33
13643590--13643629	20	2.0	21	85	5	55	27	12	2	57	1.48
13643516--13643634	3	39.7	3	73	9	91	28	6	4	60	1.41
13643770--13643818	21	2.3	21	78	0	62	28	6	0	65	1.16
13643943--13643973	15	2.1	15	93	0	53	29	6	3	61	1.37
13643953--13643990	18	2.1	18	85	9	51	28	10	2	57	1.45
13647625--13647655	15	2.1	15	93	0	53	58	0	35	6	1.24
13655585--13656374	205	3.9	206	90	2	1252	29	17	22	29	1.97
13656492--13656527	13	2.8	13	91	8	56	44	16	30	8	1.77
13656715--13656739	12	2.1	12	100	0	50	40	36	8	16	1.77
13661829--13661857	14	2.0	15	93	6	51	44	0	0	55	0.99
13663539--13663632	23	4.1	23	85	0	134	47	4	25	22	1.69
13668046--13668139	23	4.1	23	85	0	134	47	4	25	22	1.69
13673644--13673687	21	2.1	21	87	8	63	27	31	29	11	1.91
13674349--13674386	5	8.0	5	82	11	53	78	2	0	18	0.86
13674347--13674386	13	2.9	14	88	7	55	77	5	0	17	0.94
13676644--13676670	12	2.2	12	100	0	54	62	0	7	29	1.22
13676911--13676950	21	2.0	20	85	5	53	25	2	22	50	1.62
13682366--13682448	31	2.7	31	83	1	105	27	18	8	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13695679--13695758	30	2.6	31	81	11	94	53	13	18	13	1.72
13695681--13695758	15	5.2	15	72	9	61	53	14	17	14	1.72
13698681--13698853	93	1.9	93	91	0	283	29	30	19	21	1.97
13698674--13698849	46	3.8	46	78	10	187	30	29	18	21	1.97
13702127--13702380	131	1.9	131	94	0	445	30	22	15	31	1.95
13703249--13703429	79	2.3	81	81	7	219	25	27	22	25	2.00
13703249--13703429	40	4.6	40	81	8	217	25	27	22	25	2.00
13703935--13704131	100	2.0	100	97	0	376	25	23	17	32	1.96
13705275--13705606	25	13.3	25	71	15	132	37	21	14	26	1.92
13705275--13705603	50	6.6	50	80	6	335	37	21	14	27	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172