genome.fa.s10.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  143  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46949526--46949554	13	2.1	14	93	6	51	51	0	3	44	1.18
46950066--46950129	31	2.0	32	85	8	87	45	0	7	46	1.32
46951057--46951104	15	3.3	15	82	2	62	37	2	12	47	1.53
46951610--46951683	19	4.2	19	69	20	63	45	4	21	28	1.70
46951626--46951691	33	2.0	33	100	0	132	45	9	18	27	1.79
46952883--46953012	60	2.2	60	87	5	183	26	23	20	30	1.98
46960092--46960127	17	2.2	17	90	9	58	22	38	30	8	1.83
46964051--46964081	16	2.0	16	93	6	55	6	16	0	77	0.97
46969561--46969648	21	4.0	21	79	5	86	14	30	27	27	1.95
46974487--46974545	29	2.0	30	86	6	84	20	40	0	38	1.53
46974622--46974681	18	3.4	18	69	17	54	23	26	0	50	1.50
46979719--46980110	131	3.0	130	87	2	536	37	19	17	25	1.93
46989578--46989603	4	6.5	4	100	0	52	76	0	0	23	0.78
46991014--46991085	36	2.0	36	100	0	144	36	11	22	30	1.89
46997053--46997109	19	3.1	18	73	14	53	63	1	0	35	1.05
46997042--46997119	20	4.0	20	75	13	63	62	1	0	35	1.03
46997264--46997298	10	3.4	10	88	7	52	71	0	5	22	1.07
46997319--46997514	28	6.9	28	69	13	89	31	4	1	62	1.25
46997319--46997541	9	23.8	9	64	15	51	30	4	2	63	1.26
46997423--46997515	19	5.0	19	71	18	70	37	2	0	60	1.09
47006569--47006620	21	2.5	21	84	3	61	51	3	11	32	1.56
47011811--47011856	21	2.2	21	84	7	58	56	0	2	41	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47012213--47012264	26	2.0	25	82	10	61	40	5	1	51	1.37
47012448--47012481	16	2.1	16	94	0	59	41	0	0	58	0.98
47013485--47013514	11	2.7	11	100	0	60	63	0	20	16	1.31
47025069--47025107	19	2.1	19	100	0	78	38	15	10	35	1.81
47026346--47026502	78	2.0	78	89	0	242	38	14	15	31	1.87
47034934--47034996	31	2.0	31	93	0	108	25	25	19	30	1.98
47034972--47035100	50	2.5	51	89	2	206	25	21	16	36	1.94
47037642--47037810	27	6.3	26	77	9	90	40	21	8	28	1.83
47037634--47037811	54	3.3	54	75	6	164	39	21	8	29	1.84
47037642--47037811	81	2.1	81	81	6	193	40	21	8	28	1.83
47037761--47037878	55	2.2	54	83	4	139	35	22	5	36	1.78
47037788--47037889	27	3.7	27	89	5	152	34	20	5	39	1.77
47037788--47037902	54	2.1	55	84	7	146	34	22	6	36	1.79
47037884--47037960	27	2.9	27	88	0	118	40	20	16	22	1.91
47038226--47038359	6	21.8	6	74	15	114	18	17	16	47	1.83
47038203--47038345	31	4.6	31	93	0	223	18	17	15	48	1.81
47044045--47044070	13	2.0	13	100	0	52	23	38	30	7	1.83
47044988--47045118	54	2.4	54	100	0	262	29	22	20	26	1.99
47064316--47064356	21	2.0	21	100	0	82	58	17	14	9	1.62
47065807--47065845	3	13.0	3	94	0	69	30	2	33	33	1.72
47081389--47081466	29	2.7	29	100	0	156	17	20	29	32	1.96
47091336--47091400	20	3.3	20	70	12	62	43	1	0	55	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47091348--47091412	20	3.3	19	76	6	67	46	3	0	50	1.17
47091443--47091503	17	3.5	17	68	24	54	67	3	3	26	1.22
47095933--47096026	45	2.1	45	95	0	170	32	19	13	34	1.91
47097550--47097594	23	1.9	24	86	4	65	40	0	0	60	0.97
47097555--47097593	15	2.5	15	79	4	51	43	0	0	56	0.99
47098095--47098168	31	2.4	31	81	9	87	41	0	5	52	1.24
47100203--47100269	33	2.0	33	97	0	125	31	4	22	41	1.73
47101061--47101130	26	2.7	26	86	6	99	21	24	17	37	1.94
47101087--47101163	23	3.2	23	88	5	100	16	24	22	36	1.94
47101111--47101181	23	3.1	22	86	8	72	18	26	21	33	1.96
47101289--47101336	25	1.9	25	87	8	71	29	22	8	39	1.83
47104206--47104351	37	4.0	37	93	1	242	24	21	16	36	1.94
47104315--47104583	46	5.6	46	84	10	340	28	22	14	34	1.93
47104358--47104577	52	4.3	52	85	8	299	27	22	14	35	1.93
47104315--47104583	98	2.7	98	93	0	457	28	22	14	34	1.93
47109550--47109590	21	2.0	21	90	0	64	46	19	0	34	1.50
47113604--47113673	30	2.4	30	83	9	92	17	7	0	75	1.01
47113599--47113676	5	14.8	5	80	9	50	17	6	0	75	1.00
47113782--47113893	42	2.6	42	87	4	154	29	33	12	24	1.92
47113782--47113915	42	3.2	42	85	5	119	31	35	11	20	1.89
47114673--47114885	118	1.8	118	96	0	399	22	16	31	29	1.95
47115032--47115065	9	3.9	9	92	7	61	91	0	8	0	0.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47115030--47115102	12	6.6	11	73	14	62	83	0	12	4	0.78
47115032--47115064	17	1.9	17	100	0	66	90	0	9	0	0.44
47116866--47116930	32	2.0	32	100	0	130	43	9	9	38	1.69
47118526--47118753	46	5.0	45	88	4	296	22	22	14	39	1.91
47122009--47122043	3	11.7	3	100	0	70	34	0	0	65	0.93
47143585--47143613	6	4.8	6	100	0	58	13	0	68	17	1.20
47144066--47144103	14	2.7	14	84	8	51	44	10	13	31	1.77
47157074--47157110	17	2.2	17	95	0	65	51	0	0	48	1.00
47171571--47171595	12	2.1	12	100	0	50	36	16	8	40	1.77
47173541--47173569	13	2.1	14	93	6	51	27	3	0	68	1.05
47178835--47178869	5	6.8	5	96	3	61	22	0	0	77	0.78
47185454--47185546	42	2.2	42	84	5	116	32	35	12	19	1.90
47187222--47187254	10	3.4	10	95	4	59	33	6	0	60	1.21
47190508--47190847	54	6.3	54	90	0	502	40	20	9	30	1.83
47190508--47190920	27	15.3	27	84	0	450	39	19	9	30	1.84
47190940--47191108	27	6.3	27	85	0	221	35	18	20	25	1.95
47190940--47191107	54	3.1	54	87	0	246	35	18	20	25	1.95
47191621--47191741	6	19.8	6	69	16	79	19	18	13	49	1.79
47191622--47191721	43	2.3	43	86	6	123	19	19	14	48	1.82
47191713--47191750	12	3.2	12	88	7	51	18	10	13	57	1.63
47193046--47193155	56	2.0	56	90	0	175	20	12	25	41	1.87
47194356--47194387	16	2.0	16	100	0	64	37	18	6	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47195205--47195260	26	2.2	26	96	0	103	30	5	26	37	1.79
47200451--47200509	20	3.0	20	85	2	84	30	22	23	23	1.99
47203450--47203510	30	2.0	30	83	0	77	29	24	6	39	1.80
47207801--47207840	9	4.2	10	87	12	50	70	0	0	30	0.88
47207806--47207848	9	5.2	8	89	10	61	72	0	0	27	0.85
47214624--47215026	41	9.9	41	77	8	299	38	19	17	24	1.93
47214653--47215005	123	2.9	123	80	9	357	37	20	17	24	1.93
47216405--47216499	41	2.3	40	90	1	145	27	24	12	35	1.91
47216797--47216834	11	3.4	11	92	3	58	15	23	5	55	1.61
47216797--47216835	17	2.3	16	86	8	51	17	23	5	53	1.63
47218729--47218781	27	2.0	27	88	0	79	41	22	1	33	1.65
47218706--47218797	9	9.6	9	70	13	67	43	22	1	32	1.61
47224250--47224370	43	2.8	43	89	1	170	20	27	21	30	1.98
47229329--47229365	16	2.2	16	90	9	56	70	0	0	29	0.88
47229328--47229374	16	2.9	16	79	17	53	65	0	2	31	1.04
47235344--47235373	13	2.3	13	94	0	51	50	6	0	43	1.28
47236020--47236099	25	3.3	24	72	17	67	56	7	3	32	1.45
47239811--47239981	87	2.0	87	91	0	279	25	8	30	35	1.85
47243161--47243209	10	4.9	10	82	9	64	20	10	2	67	1.30
47245164--47245195	16	2.0	17	88	11	50	31	6	18	43	1.75
47258029--47258059	15	2.1	15	100	0	62	35	19	12	32	1.90
47266923--47267096	96	1.8	96	82	1	224	36	14	8	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47272063--47272107	16	2.8	16	83	6	56	44	4	2	48	1.35
47272681--47272710	7	4.3	7	91	0	51	16	0	3	80	0.85
47275362--47275430	34	2.0	34	97	0	129	42	5	2	49	1.41
47275435--47275464	13	2.4	12	94	5	51	53	0	0	46	1.00
47278186--47278224	14	2.7	14	88	4	51	15	17	2	64	1.41
47278192--47278232	14	3.0	14	89	3	57	12	17	2	68	1.31
47278641--47278706	19	3.9	17	69	25	50	53	0	0	46	1.00
47278669--47278700	13	2.3	15	89	10	50	50	0	0	50	1.00
47278641--47278708	33	2.0	36	82	8	88	52	0	0	47	1.00
47280542--47280569	7	4.0	7	100	0	56	28	0	0	71	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172