genome.fa.s10.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  163  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53453383--53453459	13	5.8	13	72	14	59	0	23	1	75	0.88
53459488--53459731	126	1.9	126	98	0	470	37	15	18	28	1.91
53459832--53459881	13	4.2	12	80	14	52	68	0	4	28	1.08
53460613--53460648	18	2.0	18	94	0	63	16	0	58	25	1.38
53461385--53461443	25	2.4	24	81	10	66	67	6	0	25	1.15
53476671--53476773	21	4.8	21	74	14	93	59	1	4	33	1.30
53476669--53476785	23	5.2	23	73	13	102	58	1	5	34	1.33
53476735--53476773	20	2.0	20	90	10	62	61	2	0	35	1.10
53477086--53477119	12	2.8	12	81	0	50	70	0	0	29	0.87
53479031--53479241	54	3.9	54	82	6	271	36	17	12	32	1.88
53479031--53479241	111	1.9	108	83	4	271	36	17	12	32	1.88
53479257--53479395	71	2.0	71	89	0	215	32	22	15	29	1.95
53491153--53491255	21	4.8	21	74	14	93	59	1	4	33	1.30
53491151--53491267	23	5.2	23	73	13	102	58	1	5	34	1.33
53491217--53491255	20	2.0	20	90	10	62	61	2	0	35	1.10
53491554--53491612	25	2.2	27	85	8	77	62	0	5	32	1.17
53496982--53497035	14	3.9	14	90	0	81	40	1	18	38	1.61
53496970--53497035	28	2.4	28	84	5	80	40	4	15	39	1.67
53497126--53497165	18	2.2	18	90	0	62	50	0	0	50	1.00
53500532--53500626	38	2.5	37	78	13	97	36	12	1	49	1.48
53502696--53502739	19	2.3	20	84	7	56	27	20	11	40	1.86
53506887--53507150	44	6.0	44	75	7	214	29	15	25	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53506887--53507079	88	2.2	88	85	2	246	26	17	25	30	1.97
53507005--53507215	87	2.4	88	77	6	198	28	15	24	30	1.96
53506917--53507211	131	2.2	132	92	0	493	27	16	25	29	1.97
53506936--53507215	44	6.4	45	74	8	179	27	16	24	31	1.96
53507772--53507927	40	3.9	40	81	7	199	32	24	19	23	1.98
53507751--53507929	40	4.4	39	77	9	187	34	24	20	21	1.97
53507751--53507929	82	2.2	82	94	0	313	34	24	20	21	1.97
53510721--53510784	18	3.6	18	80	14	78	56	21	4	17	1.59
53511466--53511559	48	2.0	48	93	2	145	54	14	21	9	1.69
53511975--53512089	60	1.9	60	90	0	185	35	11	2	50	1.52
53518037--53518071	17	2.1	17	89	10	54	62	0	0	37	0.95
53518183--53518212	15	2.0	15	93	0	51	50	0	0	50	1.00
53519185--53519613	218	2.0	218	99	0	840	20	24	13	41	1.88
53529362--53529421	16	3.6	16	76	10	57	73	6	1	18	1.14
53529442--53529483	21	2.0	21	86	4	59	57	0	16	26	1.40
53529482--53529539	22	2.6	22	73	10	55	55	0	18	25	1.43
53529725--53529770	21	2.2	21	88	0	65	56	6	4	32	1.45
53529733--53529781	21	2.3	20	83	10	62	53	4	4	38	1.39
53529773--53529833	23	2.6	24	79	5	72	60	0	11	27	1.31
53529795--53529854	28	2.1	29	84	9	79	58	0	18	23	1.39
53530063--53530099	15	2.4	17	82	17	53	64	0	5	29	1.15
53530193--53530235	21	2.0	21	90	0	68	58	4	4	32	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53530504--53530572	32	2.2	32	84	5	86	60	1	5	31	1.29
53529588--53530547	468	2.0	464	89	4	1381	50	7	11	30	1.66
53530592--53530649	11	5.4	11	78	13	50	60	1	10	27	1.39
53530603--53530645	23	1.9	22	85	4	59	58	2	11	27	1.46
53530597--53530655	28	2.1	27	87	3	82	57	1	13	27	1.46
53534669--53534733	28	2.4	27	85	12	89	47	29	0	23	1.52
53534902--53535329	57	7.6	58	70	16	233	33	19	17	29	1.95
53534847--53535329	111	4.3	110	83	4	588	33	19	17	29	1.95
53534847--53535329	113	4.3	112	83	4	571	33	19	17	29	1.95
53536738--53536792	9	6.1	9	89	0	83	29	9	16	45	1.78
53536746--53536792	18	2.6	18	100	0	94	27	10	14	46	1.78
53536842--53536874	9	3.7	9	91	0	57	39	24	12	24	1.89
53536842--53536876	18	1.9	18	100	0	70	37	22	11	28	1.89
53545332--53545362	9	3.4	9	90	0	53	45	0	22	32	1.53
53547031--53547068	19	2.0	20	90	10	62	36	18	10	34	1.85
53551571--53551603	17	1.9	17	88	11	50	69	0	0	30	0.88
53551571--53551604	18	1.9	17	88	5	50	70	0	0	29	0.87
53551860--53551935	22	3.7	21	76	15	68	40	17	6	35	1.75
53551889--53551967	35	2.2	37	86	13	121	35	16	10	37	1.82
53551910--53551965	17	3.5	15	88	9	60	35	16	10	37	1.83
53551896--53551967	19	3.9	19	89	10	123	36	15	11	37	1.83
53552317--53552516	45	4.5	45	87	3	278	23	28	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53552317--53552500	89	2.1	90	89	5	284	24	28	15	31	1.95
53552530--53553136	78	7.8	78	87	3	812	24	24	18	32	1.97
53552533--53553136	234	2.6	234	88	1	908	24	24	18	32	1.97
53553169--53553330	89	1.8	89	86	5	240	26	23	19	30	1.98
53553078--53553887	220	3.7	220	92	0	1332	26	21	19	32	1.97
53556782--53556840	30	2.0	30	96	0	109	25	30	13	30	1.94
53559781--53559930	25	6.2	24	82	8	164	35	20	25	19	1.95
53559818--53559930	25	4.5	25	86	4	165	35	18	24	21	1.96
53559818--53559930	50	2.3	50	92	3	183	35	18	24	21	1.96
53561766--53561859	25	3.8	25	92	2	154	34	19	25	21	1.96
53570466--53570585	44	2.6	48	79	13	155	60	4	9	26	1.46
53570600--53570685	7	12.0	7	82	4	82	44	32	0	23	1.54
53570603--53570687	29	3.0	29	91	1	136	44	30	0	24	1.54
53570601--53570685	22	4.0	21	80	4	89	44	31	0	23	1.54
53570956--53571009	17	2.9	19	89	10	94	35	14	11	38	1.82
53572729--53572787	28	2.0	30	83	6	77	59	1	0	38	1.08
53575317--53575363	21	2.2	22	92	3	78	21	38	19	21	1.94
53578740--53578773	17	1.9	18	88	5	52	55	0	0	44	0.99
53580628--53580670	19	2.2	20	88	12	63	62	4	0	32	1.15
53580703--53580750	22	2.1	23	84	3	62	64	2	0	33	1.05
53580763--53580818	9	6.0	9	76	12	51	57	3	1	37	1.27
53582239--53582295	23	2.5	22	78	13	62	26	1	3	68	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53582266--53582308	16	2.6	16	77	7	50	34	0	0	65	0.93
53582653--53582753	10	10.2	10	69	17	50	29	1	3	64	1.23
53589976--53590067	48	1.9	48	97	0	175	28	7	20	43	1.79
53595128--53595207	3	27.0	3	69	16	51	65	0	33	1	1.01
53595132--53595200	16	3.9	17	74	12	59	63	0	34	1	1.03
53595135--53595193	16	3.8	16	80	12	61	62	0	35	1	1.05
53595131--53595207	13	5.9	13	70	15	52	64	0	33	1	1.01
53595128--53595207	19	4.2	19	70	19	58	65	0	33	1	1.01
53595791--53596486	146	4.9	130	79	11	399	56	6	8	28	1.54
53595926--53596686	146	5.1	146	86	5	1026	56	6	8	28	1.54
53595925--53596686	299	2.6	292	88	4	1062	56	6	8	28	1.54
53595765--53596686	445	2.1	433	91	3	1461	56	6	8	28	1.55
53596817--53596858	18	2.5	17	80	7	50	54	7	0	38	1.28
53598546--53598686	72	2.0	72	94	0	246	20	25	20	33	1.97
53604012--53604058	19	2.4	20	82	13	62	70	12	0	17	1.17
53604110--53604164	16	3.2	17	82	12	60	0	27	1	70	0.97
53604109--53604164	18	3.3	17	77	20	55	0	28	1	69	0.98
53604127--53604172	19	2.4	19	82	7	58	0	32	2	65	1.05
53604311--53604353	19	2.3	18	92	4	68	4	9	9	76	1.14
53608749--53608824	18	4.2	18	81	6	91	32	11	22	32	1.90
53619400--53619448	24	2.0	24	84	4	62	34	2	4	59	1.28
53622303--53622522	118	1.9	118	92	3	374	41	5	9	44	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53627115--53627230	16	6.6	17	67	18	53	46	13	10	29	1.77
53627207--53627237	16	1.9	16	93	0	53	48	12	12	25	1.77
53627178--53627301	39	3.2	38	76	12	110	44	9	8	37	1.67
53627218--53627290	21	3.6	21	82	12	82	38	10	8	42	1.70
53627146--53627259	39	3.1	36	78	12	99	44	10	9	35	1.72
53627235--53627292	19	3.0	19	89	2	89	39	10	5	44	1.61
53627361--53627755	17	21.9	17	68	21	143	44	8	14	32	1.75
53627451--53627767	17	17.6	17	72	15	167	44	8	14	32	1.75
53627691--53627744	16	3.2	16	75	14	56	40	9	14	35	1.78
53628103--53628155	10	5.7	9	82	13	63	0	15	1	83	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172