genome.fa.s10.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  124  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41406869--41406930	29	2.1	30	84	6	81	40	3	9	46	1.53
41408276--41408308	17	1.9	17	88	11	50	36	0	0	63	0.95
41412038--41412109	32	2.3	31	95	4	135	37	6	25	30	1.82
41413048--41413138	36	2.5	37	89	5	148	27	16	3	52	1.59
41417617--41417770	63	2.8	50	66	25	130	29	22	10	37	1.87
41427049--41427104	22	2.6	22	86	5	71	46	0	0	53	1.00
41427112--41427150	13	2.9	14	85	14	55	53	0	0	46	1.00
41427667--41427704	13	2.8	14	88	8	60	34	21	7	36	1.82
41429078--41429319	27	8.9	28	81	7	277	28	22	9	39	1.86
41429078--41429320	81	3.0	80	83	6	321	27	22	9	39	1.86
41429329--41429524	27	7.3	27	84	0	230	36	18	18	25	1.94
41429723--41429805	27	3.1	26	86	5	103	19	20	21	38	1.93
41429893--41429951	22	2.7	22	81	0	64	20	25	22	32	1.98
41430116--41430189	27	2.8	27	85	6	89	18	22	20	37	1.94
41430307--41430499	6	31.8	6	74	16	159	21	16	13	48	1.80
41430307--41430499	30	6.6	30	85	8	245	21	16	13	48	1.80
41430307--41430494	85	2.2	85	96	0	340	21	16	13	48	1.81
41433575--41433603	11	2.6	11	100	0	58	37	6	6	48	1.57
41440989--41441154	27	6.1	27	83	0	197	36	19	21	23	1.95
41440991--41441151	81	2.0	81	86	0	223	36	19	20	23	1.95
41441339--41441391	26	2.0	26	85	0	70	16	22	20	39	1.92
41450927--41451011	32	2.7	32	84	0	116	29	25	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41452067--41452178	18	6.2	18	75	6	93	36	16	11	35	1.85
41452067--41452178	36	3.1	36	79	5	127	36	16	11	35	1.85
41452061--41452178	54	2.2	54	78	0	137	35	16	11	37	1.84
41452505--41452537	17	1.9	17	88	11	50	30	18	0	51	1.46
41452602--41452870	135	2.0	132	81	9	314	44	13	2	38	1.59
41453085--41453117	13	2.3	15	90	10	52	54	0	0	45	0.99
41453210--41453248	4	9.2	4	83	10	51	43	2	0	53	1.14
41457774--41457807	17	2.0	17	88	0	50	55	14	0	29	1.40
41465665--41465712	24	2.0	25	91	4	80	22	22	18	35	1.96
41470200--41470276	40	2.0	39	84	5	102	35	32	16	15	1.91
41470731--41470763	17	1.9	17	100	0	66	12	42	27	18	1.85
41473587--41473691	26	4.0	26	91	0	174	35	23	8	32	1.85
41475259--41475300	22	2.1	19	86	13	57	45	0	0	54	0.99
41475259--41475297	16	2.5	15	83	8	51	46	0	0	53	1.00
41475706--41475737	15	2.1	15	100	0	64	43	12	18	25	1.85
41476760--41476796	9	4.1	9	89	0	56	29	8	13	48	1.71
41476849--41476881	9	3.7	9	91	0	57	39	24	12	24	1.89
41476849--41476883	18	1.9	18	100	0	70	37	22	11	28	1.89
41477131--41477188	25	2.3	26	82	11	68	37	3	3	55	1.34
41480826--41480938	57	2.0	56	98	0	208	30	17	25	25	1.97
41483851--41483915	28	2.4	28	86	2	96	41	23	9	26	1.84
41483862--41483929	28	2.4	28	82	4	75	39	22	8	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41490246--41490530	41	7.0	41	80	6	258	33	20	23	23	1.97
41490244--41490530	82	3.5	82	80	3	292	33	20	23	22	1.97
41497550--41497590	19	2.2	19	86	4	57	21	2	4	70	1.18
41503166--41503226	30	2.0	30	87	0	86	39	6	22	31	1.80
41503937--41504086	67	2.2	67	81	8	171	32	17	28	21	1.96
41503961--41504144	67	2.8	64	77	8	194	29	17	29	22	1.97
41505998--41506232	50	4.7	50	79	6	269	26	17	26	29	1.97
41525483--41525536	25	2.2	25	83	6	65	27	22	18	31	1.97
41529721--41529766	25	1.9	23	86	8	65	28	0	8	63	1.24
41536536--41537400	39	22.2	39	99	0	1712	28	25	17	28	1.98
41557614--41557716	54	1.9	54	97	0	197	31	9	33	25	1.88
41569463--41569567	24	4.5	23	76	7	95	36	16	21	25	1.94
41571826--41571881	22	2.5	23	72	16	55	30	17	14	37	1.90
41589481--41589517	17	2.2	17	95	0	65	59	10	8	21	1.56
41589716--41589771	27	2.1	26	93	3	94	14	30	30	23	1.93
41621679--41621733	27	2.0	27	92	0	92	40	25	10	23	1.87
41626249--41626341	6	15.3	6	84	2	105	18	3	4	74	1.12
41629997--41630037	18	2.3	18	87	8	57	21	2	4	70	1.18
41633030--41633090	6	10.8	5	81	16	59	18	1	4	75	1.06
41633030--41633090	18	3.6	16	80	10	68	18	1	4	75	1.06
41638757--41638799	6	6.5	6	82	17	50	79	0	0	20	0.74
41638758--41638798	21	2.0	22	90	9	68	78	0	0	21	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41666454--41666500	23	2.0	23	91	0	76	44	0	0	55	0.99
41672300--41672346	23	2.1	21	84	7	58	38	0	8	53	1.32
41674682--41674745	20	3.2	20	77	4	65	26	7	1	64	1.30
41674731--41674772	3	13.7	3	80	14	50	33	2	0	64	1.07
41674736--41674789	24	2.2	24	83	0	63	27	9	1	61	1.37
41683478--41683517	15	2.7	15	84	3	55	50	2	0	47	1.14
41685463--41685510	24	2.0	24	83	0	60	58	8	2	31	1.39
41687691--41687746	28	2.0	28	96	0	103	23	14	7	55	1.63
41688118--41688160	18	2.4	18	92	0	68	58	2	0	39	1.11
41693890--41693952	7	9.0	7	74	6	56	31	0	0	68	0.90
41693905--41693949	15	3.1	15	80	6	56	31	0	0	68	0.89
41694732--41694764	11	2.9	12	91	8	52	69	6	0	24	1.10
41696084--41696146	6	10.3	6	83	10	74	22	3	0	74	0.96
41696089--41696158	26	2.8	25	80	6	79	22	4	0	72	1.01
41696084--41696149	32	2.1	31	83	8	80	22	3	0	74	0.96
41697733--41697799	34	2.0	34	90	0	107	38	29	10	20	1.86
41709035--41709080	7	6.6	7	84	0	65	28	26	17	28	1.98
41709035--41709080	21	2.2	21	96	0	83	28	26	17	28	1.98
41709035--41709086	21	2.5	21	90	0	68	30	23	15	30	1.95
41709120--41709207	34	2.6	34	81	3	106	18	1	30	50	1.54
41709486--41709553	25	2.7	25	93	0	100	20	30	35	13	1.91
41709498--41709553	25	2.2	25	100	0	112	23	32	33	10	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41710798--41710871	20	3.7	19	73	18	69	12	0	37	50	1.40
41710774--41710871	41	2.4	41	84	0	124	14	1	34	50	1.50
41710822--41710887	34	1.9	34	81	6	80	15	0	34	50	1.44
41710860--41710960	42	2.3	43	85	6	116	25	3	31	38	1.74
41710969--41711010	21	2.0	21	85	0	57	26	4	26	42	1.75
41711589--41711616	7	4.0	7	100	0	56	57	14	0	28	1.38
41717189--41717356	40	4.2	40	83	4	106	25	27	23	23	2.00
41717212--41717356	40	3.6	40	85	4	193	23	26	24	25	2.00
41719992--41720035	3	14.7	3	100	0	88	68	0	31	0	0.90
41721213--41721237	7	3.6	7	100	0	50	88	0	0	12	0.53
41728985--41729014	15	2.0	15	93	0	51	23	0	0	76	0.78
41730879--41730986	26	4.2	26	93	0	189	32	7	24	36	1.83
41731955--41732066	27	4.1	27	82	3	118	16	25	23	35	1.94
41731955--41732066	54	2.1	54	86	3	154	16	25	23	35	1.94
41732846--41732905	10	6.0	10	88	7	95	68	1	8	21	1.25
41733352--41733448	40	2.5	38	88	6	149	29	26	19	23	1.98
41733363--41733446	40	2.1	40	95	0	150	32	28	16	22	1.96
41738032--41738080	26	1.9	25	87	4	71	22	4	10	63	1.43
41738070--41738147	26	3.0	28	77	17	80	34	3	6	55	1.44
41750924--41750954	16	1.9	16	93	0	53	48	6	0	45	1.28
41750922--41750964	16	2.7	16	82	7	52	51	4	0	44	1.22
41751109--41751167	29	2.0	30	86	3	84	27	6	13	52	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41752225--41752249	12	2.1	12	100	0	50	60	0	0	40	0.97
41753763--41753863	50	2.0	50	82	1	123	30	5	11	51	1.62
41753906--41753937	17	1.9	17	93	6	57	34	12	6	46	1.67
41756046--41756107	6	10.5	6	74	8	56	74	0	19	6	1.03
41756046--41756129	18	4.8	16	78	15	62	72	0	20	7	1.07
41755981--41756125	36	4.3	34	72	22	101	67	0	20	11	1.26
41757809--41757902	49	1.9	49	91	2	154	26	5	12	55	1.58
41758047--41758104	30	1.9	30	86	6	82	39	12	20	27	1.88
41758629--41761261	640	4.0	647	87	7	3301	32	18	17	31	1.94
41759368--41761401	683	3.0	684	95	2	3611	31	18	19	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172