genome.fa.s10.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  80  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26568744--26568822	37	2.1	37	88	0	113	24	31	20	24	1.98
26568941--26569585	47	13.5	47	90	2	957	28	30	9	31	1.88
26568941--26569585	192	3.4	190	91	2	1010	28	30	9	31	1.88
26568941--26569585	239	2.7	239	91	1	1053	28	30	9	31	1.88
26568941--26569574	286	2.2	286	92	0	1036	28	30	9	31	1.89
26573081--26573171	40	2.3	40	90	0	137	27	26	20	25	1.99
26573055--26573212	80	2.0	80	83	2	201	25	26	20	27	1.99
26573072--26573250	40	4.5	40	78	6	136	25	26	22	25	2.00
26573558--26573636	29	2.7	29	86	5	106	27	32	15	24	1.95
26573618--26573720	43	2.4	43	96	0	197	26	34	15	23	1.94
26575734--26576680	49	19.6	49	97	1	1639	28	30	10	30	1.90
26585290--26585374	42	2.0	42	100	0	170	38	28	7	25	1.82
26589915--26589997	43	1.9	43	92	0	139	33	10	16	38	1.84
26590854--26590908	28	2.0	28	96	0	101	49	7	29	14	1.70
26593620--26593657	17	2.2	18	85	4	51	26	5	13	55	1.59
26602902--26603033	66	2.0	66	97	1	248	16	15	24	43	1.87
26607818--26607848	13	2.4	13	88	0	53	32	32	25	9	1.88
26622330--26622498	43	4.0	44	83	6	195	33	26	13	26	1.93
26625628--26625715	45	2.0	45	93	0	149	36	23	13	26	1.92
26625648--26625722	21	3.4	21	64	16	53	37	26	13	22	1.91
26638624--26638681	26	2.2	26	96	0	107	32	0	27	39	1.57
26638974--26639146	43	4.0	43	72	8	145	27	17	23	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26643321--26643351	16	1.9	16	93	0	53	35	22	0	41	1.54
26643318--26643357	20	2.0	20	90	0	62	37	20	0	42	1.52
26643611--26643797	55	3.5	53	78	8	182	22	24	17	35	1.95
26650871--26650960	40	2.2	40	98	0	171	33	25	8	32	1.87
26654961--26655044	43	2.0	43	90	4	134	35	8	19	36	1.82
26662293--26662357	30	2.2	30	88	0	94	24	1	12	61	1.39
26674873--26675064	38	5.0	38	87	1	240	21	20	25	32	1.98
26683075--26683228	38	4.0	39	87	1	195	19	21	27	31	1.97
26691690--26691753	31	2.1	31	90	0	101	25	23	14	37	1.92
26691947--26692086	23	6.0	23	87	8	194	30	22	21	26	1.99
26692137--26692203	20	3.3	20	93	0	116	32	20	11	34	1.90
26692137--26692192	11	5.5	11	71	16	57	32	19	12	35	1.89
26692240--26692287	25	1.9	25	86	0	69	25	16	27	31	1.97
26699338--26699503	43	3.9	43	87	0	208	22	30	20	26	1.98
26699368--26699550	86	2.1	86	83	7	228	24	30	20	25	1.99
26700953--26701002	24	2.1	24	96	0	91	32	16	10	42	1.81
26708300--26708392	39	2.4	39	85	0	123	23	26	19	30	1.98
26715091--26715123	15	2.1	17	88	11	52	48	0	21	30	1.50
26718038--26718093	26	2.2	26	100	0	112	30	7	26	35	1.83
26719582--26719634	26	2.0	26	85	7	72	39	22	13	24	1.90
26725930--26725971	19	2.3	19	91	4	68	0	33	0	66	0.92
26726040--26726076	2	19.0	2	88	5	58	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26726366--26726390	9	2.8	9	100	0	50	68	8	0	24	1.16
26729695--26729732	20	1.9	20	94	0	67	28	5	10	55	1.56
26734810--26734918	47	2.3	46	84	7	141	27	29	11	32	1.91
26734810--26734914	45	2.3	45	85	8	131	28	29	10	31	1.90
26737267--26737295	4	7.2	4	100	0	58	24	0	0	75	0.80
26738910--26738979	35	2.0	35	97	0	131	55	5	30	8	1.53
26740184--26740368	40	4.6	41	90	5	281	22	23	27	26	2.00
26742917--26743066	37	4.1	37	93	0	246	26	30	19	24	1.98
26743271--26743493	47	4.7	47	93	0	374	26	29	12	32	1.93
26743364--26743486	22	5.3	22	64	27	67	25	30	13	30	1.93
26746105--26746129	11	2.3	11	100	0	50	32	8	24	36	1.84
26747308--26747348	21	2.0	21	95	0	73	34	36	14	14	1.87
26749517--26749573	30	1.9	30	92	0	96	15	35	28	21	1.94
26751302--26751360	29	2.0	29	100	0	118	32	33	6	27	1.83
26751521--26751595	37	2.0	37	100	0	150	40	2	32	25	1.70
26753224--26753378	43	3.6	43	80	5	179	33	23	14	27	1.94
26766632--26766673	16	2.4	18	84	11	61	54	0	0	45	0.99
26772175--26772227	26	2.0	26	100	0	106	43	15	22	18	1.87
26773342--26773417	35	2.2	35	83	9	93	53	5	0	40	1.23
26779066--26779108	22	2.0	22	85	0	59	60	6	9	23	1.51
26779372--26779412	21	2.0	20	86	9	57	31	4	2	60	1.30
26781365--26781405	19	2.2	19	86	8	57	60	12	4	21	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26782438--26782471	11	3.1	11	91	0	50	50	0	44	5	1.26
26786562--26786605	20	2.2	20	84	8	54	68	6	6	18	1.35
26788268--26788320	14	3.7	14	87	5	79	41	5	15	37	1.70
26788775--26788863	22	4.0	22	72	15	83	44	21	6	26	1.77
26789814--26789874	32	1.9	32	90	6	97	49	16	4	29	1.66
26790089--26790113	12	2.1	12	100	0	50	0	32	0	68	0.90
26791933--26791991	22	2.8	20	76	16	57	47	1	5	45	1.34
26804493--26804697	46	4.5	44	76	11	162	23	29	18	28	1.98
26804493--26804705	94	2.3	90	82	11	238	24	30	18	27	1.98
26806851--26806915	28	2.3	28	89	5	96	32	29	7	30	1.85
26807021--26807110	28	3.2	27	78	13	94	21	23	21	34	1.97
26807031--26807121	27	3.2	28	78	7	78	23	25	17	34	1.96
26813578--26813691	57	2.0	57	100	0	228	10	19	17	52	1.73
26814505--26814536	16	2.0	16	100	0	64	43	25	25	6	1.77
26816470--26816792	40	8.1	40	91	0	538	21	28	20	29	1.98
26816470--26816792	80	4.0	80	98	0	610	21	28	20	29	1.98
26831934--26832011	28	2.8	28	80	7	86	25	15	30	28	1.96
26833887--26834174	143	2.0	144	97	0	551	31	12	19	36	1.89
26841636--26841678	16	2.7	16	88	0	59	58	16	13	11	1.64
26841898--26841977	29	2.8	28	85	7	108	23	15	33	27	1.94
26856217--26856241	13	1.9	13	100	0	50	48	0	12	40	1.40
26857677--26857775	25	4.0	25	77	0	81	27	27	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26859895--26859961	20	3.3	20	91	0	107	32	11	20	34	1.90
26860009--26860113	23	4.4	24	91	3	160	30	20	20	29	1.97
26860011--26860106	47	2.1	47	92	2	158	30	20	18	30	1.97
26868188--26868335	42	3.5	43	78	8	151	26	17	25	31	1.97
26869650--26869741	39	2.3	39	88	5	132	25	28	22	23	2.00
26869631--26869794	40	4.1	40	78	10	167	24	26	23	25	2.00
26870964--26871139	56	3.1	56	99	0	343	22	22	9	45	1.80
26877646--26877737	39	2.3	39	88	5	132	23	28	22	25	2.00
26877627--26877790	40	4.1	40	78	10	158	23	26	23	26	2.00
26878960--26879135	56	3.1	56	99	0	343	22	22	9	45	1.80
26879555--26879584	15	2.0	15	100	0	60	40	0	33	26	1.57
26889731--26889819	43	2.1	42	85	6	117	29	19	21	30	1.97
26892067--26892099	11	3.0	11	100	0	66	36	0	0	63	0.95
26892825--26892883	29	2.0	30	86	3	84	40	6	23	28	1.80
26897055--26897195	67	2.0	67	86	5	192	30	18	30	20	1.96
26897816--26897947	54	2.4	54	86	5	178	26	19	17	36	1.94
26897816--26897947	27	4.9	27	81	10	153	26	19	17	36	1.94
26903853--26903904	27	2.0	26	84	3	68	34	21	26	17	1.95
26904563--26904700	27	5.1	27	79	3	152	28	20	15	35	1.93
26907644--26907784	46	3.1	43	71	16	115	29	28	19	22	1.98
26908196--26908255	30	2.0	30	90	0	93	30	25	8	36	1.85
26915195--26915505	47	6.6	47	95	2	572	28	27	19	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26915974--26916033	30	2.0	30	90	0	93	30	25	8	36	1.85
26916382--26916454	37	2.0	37	97	0	137	35	20	21	21	1.96
26916992--26917177	27	6.9	26	81	7	185	24	15	19	40	1.90
26916992--26917177	54	3.4	54	82	2	214	24	15	19	40	1.90
26916992--26917184	81	2.4	82	81	3	228	24	15	19	40	1.90
26918040--26918129	45	2.0	45	95	0	162	31	22	21	25	1.98
26922286--26922325	16	2.5	16	87	0	62	50	20	20	10	1.76
26922555--26922653	29	3.5	28	79	9	103	26	17	28	28	1.97
26924415--26924558	27	5.3	27	85	3	191	30	21	6	40	1.79
26924590--26924850	27	9.6	27	80	5	213	41	20	8	30	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172