genome.fa.s10.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  106  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35477133--35477185	25	2.1	25	86	6	72	33	9	30	26	1.88
35477427--35477452	4	6.5	4	100	0	52	0	23	0	76	0.78
35478258--35478297	20	1.9	22	90	10	66	22	10	10	57	1.61
35482759--35482933	48	3.7	48	83	3	212	31	16	21	30	1.95
35482907--35482983	38	2.0	38	82	5	93	29	15	23	31	1.95
35485885--35485939	15	3.7	15	79	9	60	9	14	16	60	1.59
35488525--35488701	48	3.7	48	87	0	257	31	16	22	29	1.95
35488675--35488751	38	2.0	38	92	0	127	29	15	25	28	1.96
35489829--35489861	13	2.5	13	100	0	66	21	9	36	33	1.85
35491545--35491688	44	3.3	43	80	4	157	31	25	18	24	1.98
35498238--35498338	29	3.5	29	89	1	150	26	14	28	29	1.95
35504494--35504706	45	4.7	45	99	0	417	20	24	28	27	1.99
35511245--35511420	46	3.8	46	76	12	198	22	21	27	28	1.99
35511242--35511412	93	1.8	93	93	0	297	22	22	27	28	1.99
35514839--35514864	12	2.2	12	100	0	52	50	7	0	42	1.31
35515312--35515412	29	3.5	29	90	1	159	27	14	27	29	1.96
35527515--35527628	57	2.0	57	85	0	156	26	28	15	29	1.96
35530946--35531082	28	4.9	28	75	7	116	26	27	16	29	1.96
35534141--35534199	23	2.6	22	75	15	66	35	18	20	25	1.95
35545714--35545750	19	2.1	19	85	10	51	51	0	8	40	1.32
35549733--35549796	25	2.5	24	80	14	67	57	3	6	32	1.39
35575913--35576031	46	2.6	46	94	0	211	24	31	10	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35576336--35576394	31	1.9	31	100	0	118	25	27	11	35	1.91
35581090--35581150	31	2.0	31	90	0	95	27	22	13	36	1.92
35581363--35581481	23	5.1	23	95	1	202	29	20	21	28	1.98
35581532--35581578	20	2.3	20	96	0	85	34	21	10	34	1.88
35585083--35585254	40	4.3	40	90	2	249	25	27	21	25	1.99
35585085--35585300	119	1.8	120	83	7	287	25	25	21	26	2.00
35585083--35585307	79	2.8	79	81	5	238	25	26	22	26	2.00
35586440--35586559	56	2.1	56	95	0	213	22	23	7	46	1.77
35596345--35596386	21	2.0	21	100	0	84	28	33	19	19	1.96
35602188--35602457	47	5.8	47	80	8	209	29	18	28	23	1.98
35602187--35602456	94	2.9	94	82	7	302	29	18	28	24	1.98
35602507--35602633	63	2.0	63	95	0	227	29	9	27	33	1.88
35609923--35610146	47	4.8	44	72	10	130	29	17	28	24	1.98
35612900--35613044	40	3.6	40	84	4	184	26	24	26	23	2.00
35616537--35616918	46	8.3	46	79	5	387	35	4	23	36	1.76
35616495--35616918	23	18.5	23	74	9	276	34	4	23	37	1.77
35616582--35616918	69	4.9	69	76	7	344	35	4	22	36	1.75
35617623--35617826	86	2.4	84	82	5	227	28	13	25	31	1.94
35617622--35617863	43	5.7	43	75	9	185	27	13	26	32	1.94
35617622--35617826	82	2.5	82	81	5	225	28	13	26	31	1.94
35621772--35621861	29	3.1	28	83	3	99	37	15	24	22	1.93
35621781--35621872	29	3.1	28	79	4	94	42	15	23	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35633529--35633577	24	2.0	24	100	0	98	36	8	30	24	1.85
35639340--35639467	29	4.4	29	78	7	143	34	10	28	27	1.89
35639368--35639554	58	3.2	58	81	3	207	36	12	27	23	1.91
35639339--35639525	87	2.1	87	81	4	216	36	11	27	24	1.89
35639391--35639567	29	6.1	29	72	5	133	37	13	25	23	1.92
35643397--35643549	38	4.0	38	89	1	225	30	25	22	21	1.99
35645364--35645527	40	4.1	40	84	3	186	23	23	28	25	2.00
35645364--35645527	80	2.0	80	89	2	249	23	23	28	25	2.00
35653632--35653795	40	4.1	40	80	3	159	24	20	28	26	1.99
35658372--35658420	24	2.0	24	84	7	64	16	16	36	30	1.91
35658382--35658452	24	3.0	24	82	0	79	21	14	32	32	1.93
35665561--35665672	55	2.0	55	96	0	206	39	0	22	38	1.54
35666386--35666456	24	3.0	24	82	12	76	19	14	33	32	1.92
35666396--35666466	24	3.0	24	87	0	88	21	12	32	33	1.91
35668321--35668492	40	4.3	40	87	2	213	25	27	21	25	1.99
35668323--35668545	40	5.6	39	81	7	193	25	26	21	26	1.99
35668321--35668545	80	2.8	79	80	8	233	25	27	21	25	1.99
35668477--35668554	40	1.9	41	82	10	97	26	28	20	24	1.99
35671613--35671656	21	2.1	21	100	0	88	22	13	25	38	1.91
35676589--35676814	38	5.9	38	86	1	283	30	25	21	22	1.99
35678202--35678735	267	2.0	267	96	0	987	38	17	7	36	1.77
35681271--35681309	18	2.2	17	86	4	51	28	5	5	61	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35681356--35681420	6	10.5	6	79	12	51	76	3	6	13	1.09
35681374--35681420	17	2.6	18	77	16	53	76	2	8	12	1.09
35688593--35688688	44	2.2	45	83	9	117	43	7	17	31	1.76
35692141--35692300	41	3.9	41	86	4	200	27	28	15	29	1.96
35699789--35699844	19	2.8	20	86	2	69	39	0	33	26	1.57
35699948--35700069	56	2.2	57	95	3	228	33	5	38	22	1.78
35703248--35703285	16	2.2	18	86	9	53	52	23	0	23	1.47
35705127--35705205	37	2.1	37	90	0	122	25	31	18	24	1.98
35705324--35705734	47	8.7	47	97	0	750	29	30	8	32	1.86
35708909--35709180	40	6.8	40	88	1	393	26	29	20	23	1.99
35710554--35710966	47	8.7	47	95	1	727	29	30	7	32	1.86
35712105--35712146	18	2.3	18	100	0	84	42	19	4	33	1.72
35714231--35714317	34	2.5	35	86	1	113	42	18	4	34	1.71
35715575--35715615	16	2.6	16	85	11	50	31	2	0	65	1.05
35719097--35719396	151	2.0	150	94	0	528	31	19	14	35	1.91
35719704--35719743	21	1.9	21	89	0	62	60	22	5	12	1.52
35723367--35723540	38	4.5	38	86	2	215	21	22	25	30	1.99
35732042--35732248	86	2.4	85	85	4	281	29	25	18	26	1.98
35732046--35732248	41	4.8	41	77	7	181	29	25	18	26	1.98
35733535--35733590	28	2.0	28	86	6	78	12	33	10	42	1.77
35736792--35736859	34	2.0	34	100	0	136	17	23	29	29	1.97
35745137--35745346	41	4.9	42	77	8	181	32	26	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35745162--35745346	86	2.2	86	87	0	271	32	25	15	25	1.95
35745137--35745355	45	5.0	45	77	7	175	33	26	15	25	1.95
35749434--35749524	45	2.0	45	97	0	173	45	6	9	38	1.64
35750939--35751042	55	1.9	55	93	0	181	54	17	10	17	1.69
35753107--35753186	40	2.0	40	100	0	160	37	20	7	35	1.81
35753537--35753991	113	4.0	113	100	0	910	39	14	6	40	1.70
35760006--35760046	6	6.8	6	97	0	64	39	17	0	43	1.49
35760370--35760631	87	3.0	87	100	0	524	33	20	14	31	1.93
35763109--35763165	28	2.0	28	96	0	105	26	26	14	33	1.94
35786794--35786850	29	2.0	29	96	0	105	28	26	17	28	1.98
35787128--35787207	33	2.4	33	89	0	124	22	18	22	36	1.95
35787896--35787945	25	2.0	26	84	11	68	40	0	2	58	1.10
35788008--35788044	16	2.3	16	86	13	58	59	0	0	40	0.97
35797617--35797655	14	2.8	14	84	0	51	30	7	10	51	1.64
35800483--35800519	13	2.5	15	87	12	51	54	2	0	43	1.14
35803295--35803335	18	2.4	17	87	4	55	34	0	0	65	0.93
35809071--35809096	13	2.0	13	100	0	52	92	7	0	0	0.39
35809675--35809741	16	4.2	16	73	7	55	31	16	1	50	1.54
35812756--35812813	29	2.1	27	87	6	80	32	8	8	50	1.64
35813551--35813622	19	3.6	19	76	16	67	31	1	1	65	1.10
35815610--35815758	64	2.4	62	86	6	203	35	4	10	48	1.59
35820816--35821120	127	2.4	125	84	5	395	27	17	18	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35821316--35821425	28	3.9	28	79	11	118	40	17	2	39	1.64
35822151--35822200	25	2.0	24	84	3	64	40	0	2	58	1.10
35822729--35822820	31	3.1	29	75	10	87	51	9	5	33	1.58
35822740--35822820	29	2.7	30	82	5	101	49	9	6	34	1.61
35824193--35824233	9	5.0	8	88	11	57	0	26	0	73	0.84
35824833--35825125	3	97.3	3	76	6	252	31	6	1	60	1.31
35825121--35825162	17	2.4	18	84	11	52	14	4	2	78	1.01
35825077--35825168	6	16.6	5	77	13	51	22	4	1	71	1.10
35825105--35825167	12	5.7	11	78	14	58	19	3	1	76	1.01
35824926--35825169	24	10.4	24	72	17	126	27	6	1	64	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172