genome.fa.s10.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  32  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9924752--9924797	20	2.3	20	92	0	74	28	0	2	69	1.00
9924751--9924812	30	2.0	31	85	14	85	27	3	1	67	1.15
9926128--9926474	51	6.9	51	85	2	432	31	23	18	25	1.97
9926122--9926474	102	3.5	102	89	2	498	31	23	18	25	1.98
9928343--9928767	213	2.0	214	96	0	789	32	17	13	36	1.89
9940311--9941016	78	9.1	78	91	0	1092	32	18	24	25	1.97
9948161--9948199	21	1.9	20	85	15	53	48	20	12	17	1.80
9962118--9962174	25	2.3	26	78	9	64	31	15	12	40	1.85
9963529--9963563	17	2.1	17	100	0	70	17	37	22	22	1.94
9965535--9965619	41	2.1	40	84	2	107	29	22	17	30	1.97
9967686--9967743	30	1.9	30	85	0	80	44	17	31	6	1.75
9969764--9969863	44	2.2	44	81	8	112	35	11	22	32	1.89
9979866--9979890	11	2.3	11	100	0	50	8	28	0	64	1.22
9985458--9985505	22	2.2	22	85	7	62	66	10	12	10	1.44
9988321--9988360	16	2.5	16	100	0	80	25	12	32	30	1.92
9990496--9990537	16	2.7	16	78	14	52	42	0	0	57	0.99
9993648--9993814	78	2.1	78	89	0	253	17	29	16	36	1.92
9993645--9993795	39	3.9	39	89	0	230	15	31	16	36	1.91
9993676--9993834	78	2.0	78	86	0	219	16	28	18	36	1.93
10001168--10001300	39	3.4	39	84	4	178	14	29	18	37	1.90
10001187--10001247	20	3.1	20	65	13	54	13	34	21	31	1.91
10007878--10007949	36	2.0	36	91	0	117	29	30	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10009760--10009937	17	10.4	17	76	4	124	31	14	28	25	1.95
10009786--10009913	68	1.9	68	83	0	166	32	17	25	24	1.96
10009780--10009964	51	3.6	51	75	5	160	31	15	27	25	1.95
10009850--10009961	17	6.6	17	81	2	91	32	16	26	25	1.96
10009967--10010000	17	2.0	17	88	0	50	26	20	29	23	1.99
10009989--10010084	17	5.6	17	61	9	52	28	18	25	28	1.98
10009971--10010080	34	3.2	34	76	10	116	29	20	24	26	1.99
10009968--10010111	68	2.1	68	80	2	164	27	19	26	27	1.99
10012387--10012569	40	4.6	39	81	6	170	24	20	27	26	1.99
10012423--10012604	79	2.3	80	79	3	190	26	20	27	25	1.99
10019355--10019411	25	2.3	25	96	0	105	47	15	0	36	1.46
10020570--10020610	5	8.0	5	84	15	57	41	0	0	58	0.98
10020567--10020610	8	5.6	8	79	15	56	40	0	0	59	0.98
10026040--10026150	37	3.0	37	82	4	116	34	19	15	30	1.93
10035088--10035126	18	2.2	17	86	4	51	79	0	0	20	0.73
10044463--10044516	20	2.7	20	82	0	63	24	20	18	37	1.94
10044463--10044536	30	2.5	30	86	8	98	21	20	18	39	1.93
10044463--10044527	20	3.2	20	71	16	53	23	21	16	38	1.93
10045377--10045418	18	2.3	18	87	0	57	71	4	16	7	1.26
10047113--10047150	10	3.8	10	83	13	51	28	31	18	21	1.97
10047111--10047149	20	2.0	20	94	0	69	28	33	17	20	1.96
10048521--10048557	18	2.1	18	89	0	56	67	0	21	10	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10052937--10052974	18	2.0	19	85	10	51	21	2	2	73	1.07
10066536--10066574	16	2.5	15	87	8	51	58	5	7	28	1.47
10074807--10074858	26	2.0	26	88	3	79	46	0	3	50	1.20
10074820--10074875	26	2.2	25	81	6	67	53	0	1	44	1.11
10075427--10075453	14	1.9	14	100	0	54	37	0	0	62	0.95
10075758--10076024	58	4.6	58	97	0	480	52	13	7	26	1.65
10075957--10076198	94	2.6	92	76	10	256	48	14	8	28	1.72
10076178--10076231	28	1.9	28	85	7	74	66	9	11	12	1.44
10077678--10077736	29	2.0	29	100	0	118	30	6	32	30	1.83
10077686--10077747	29	2.1	28	85	8	79	33	8	27	30	1.86
10078503--10078570	16	4.2	16	90	0	109	29	0	35	35	1.58
10078551--10078660	45	2.6	41	78	9	116	32	5	29	32	1.80
10078786--10078827	15	2.7	16	82	14	52	52	2	0	45	1.13
10078795--10078836	15	2.9	15	82	10	52	52	0	0	47	1.00
10078821--10079008	61	3.1	61	71	11	215	49	7	1	41	1.40
10078789--10079018	120	1.9	120	99	0	451	50	6	1	41	1.40
10078824--10079007	59	3.1	59	67	17	180	49	7	1	41	1.41
10087072--10087109	20	1.9	20	88	0	58	57	23	0	18	1.40
10093228--10093275	24	2.0	24	100	0	96	25	8	20	45	1.79
10095221--10095258	20	1.9	20	94	0	67	23	10	28	36	1.88
10096379--10096417	20	2.0	20	94	0	69	33	30	12	23	1.92
10098509--10098576	31	2.2	31	81	5	75	42	7	4	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10099633--10099659	14	1.9	14	100	0	54	37	14	22	25	1.93
10106137--10106244	44	2.4	45	84	3	137	28	23	14	33	1.94
10107697--10107739	20	2.2	20	87	8	61	69	2	4	23	1.18
10107701--10107778	10	7.9	10	72	11	54	65	5	2	26	1.27
10109093--10109122	15	2.0	15	100	0	60	40	33	26	0	1.57
10109344--10109405	5	12.6	5	76	10	65	75	6	0	17	1.00
10113131--10113239	24	4.5	24	88	0	155	38	28	12	20	1.89
10113636--10113666	14	2.3	13	94	5	53	22	0	0	77	0.77
10119877--10119961	24	3.5	24	86	0	116	37	29	12	20	1.90
10119877--10119973	24	4.0	24	75	15	92	37	29	12	20	1.89
10124461--10124522	10	6.1	10	83	12	74	66	1	8	24	1.28
10140497--10140521	13	1.9	13	100	0	50	16	4	8	72	1.24
10143399--10143448	25	2.0	25	92	0	82	40	16	4	40	1.67
10145596--10145709	58	2.0	58	80	3	131	29	23	25	21	1.99
10150239--10150304	32	2.1	32	100	0	132	25	15	6	53	1.65
10165292--10165865	300	1.9	300	85	3	798	37	15	19	26	1.92
10171486--10171558	36	2.0	36	91	0	119	47	17	23	10	1.79
10174981--10175022	21	2.0	21	100	0	84	28	19	9	42	1.82
10175864--10175888	13	1.9	13	100	0	50	36	0	0	64	0.94
10187711--10187804	40	2.3	40	87	0	125	23	17	26	32	1.96
10187791--10187844	28	1.9	28	88	0	81	25	12	29	31	1.93
10190766--10190925	43	3.7	43	79	11	193	23	18	26	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10194105--10194177	26	2.8	26	80	0	65	39	12	16	31	1.85
10200157--10200191	10	3.4	10	88	4	52	71	0	22	5	1.07
10200157--10200197	21	2.0	20	90	4	64	73	0	19	7	1.07
10212384--10212472	43	2.1	43	81	8	101	74	5	16	3	1.15
10220301--10220346	20	2.3	20	82	14	60	28	28	17	26	1.98
10220313--10220356	19	2.2	20	84	4	54	34	25	18	22	1.96
10229844--10229868	13	1.9	13	100	0	50	16	40	28	16	1.89
10234539--10234585	21	2.2	22	96	3	87	42	17	23	17	1.88
10235207--10236056	45	18.9	45	99	0	1682	38	15	13	33	1.86
10237755--10237848	23	4.1	23	83	0	125	22	24	5	47	1.71
10242262--10242355	23	4.1	23	83	0	125	22	24	5	47	1.71
10251114--10251176	30	2.1	30	96	0	117	26	3	12	57	1.51
10255261--10255317	25	2.3	25	96	0	105	47	15	0	36	1.46
10256476--10256516	5	8.0	5	84	15	57	41	0	0	58	0.98
10256473--10256516	8	5.6	8	79	15	56	40	0	0	59	0.98
10261946--10262056	37	3.0	37	82	4	116	34	19	15	30	1.93
10275423--10275487	21	3.2	21	70	12	73	12	27	21	38	1.89
10275405--10275505	39	2.6	39	91	0	175	12	24	23	38	1.90
10289013--10289073	20	3.0	20	90	0	95	32	6	18	42	1.76
10289013--10289114	40	2.5	40	80	0	114	33	9	16	40	1.82
10289023--10289087	20	3.2	20	88	0	94	35	7	16	40	1.78
10289043--10289113	20	3.5	20	82	3	63	35	12	15	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10289023--10289120	20	4.9	19	81	5	61	34	10	16	38	1.82
10290588--10290622	8	4.4	8	96	0	61	31	0	17	51	1.45
10294950--10295020	35	2.0	36	88	2	108	40	5	18	35	1.74
10295486--10295544	20	3.0	19	78	7	64	32	13	13	40	1.84
10295515--10295559	20	2.2	20	84	0	54	37	11	17	33	1.85
10302732--10302771	18	2.2	18	100	0	80	25	12	17	45	1.83
10319228--10319252	12	2.1	12	100	0	50	24	16	28	32	1.96
10323472--10323548	39	2.0	39	94	0	136	46	10	23	19	1.80
10328859--10328966	26	4.2	26	85	0	135	29	24	19	26	1.98
10329247--10329282	18	2.0	18	100	0	72	38	27	16	16	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172