genome.fa.s10.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  47  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15149364--15149440	39	2.0	39	97	0	145	25	20	18	35	1.95
15154227--15154367	27	5.3	26	87	2	156	36	22	22	18	1.95
15154227--15154365	54	2.6	54	86	3	174	35	22	23	18	1.95
15154468--15154543	26	2.8	27	80	4	82	31	11	21	35	1.89
15154681--15154770	45	2.0	45	97	0	171	31	16	15	36	1.90
15156027--15156136	26	4.2	26	95	2	177	36	24	4	34	1.76
15158421--15158458	19	2.0	19	100	0	76	31	21	10	36	1.87
15159262--15159372	42	2.6	42	82	2	125	28	12	18	39	1.88
15160407--15160555	74	2.0	75	86	1	210	46	7	14	31	1.72
15160531--15161789	144	8.8	144	95	1	2064	40	7	6	45	1.58
15173575--15174266	138	5.0	137	88	2	1003	40	7	6	45	1.57
15173575--15174266	137	5.0	138	88	2	982	40	7	6	45	1.57
15173575--15174266	275	2.5	276	88	2	1007	40	7	6	45	1.57
15174516--15174563	19	2.3	22	86	13	66	39	2	4	54	1.32
15179068--15179172	52	2.0	52	98	0	201	26	15	20	38	1.92
15183876--15184047	79	2.2	79	82	3	211	25	21	27	25	1.99
15183876--15184045	40	4.3	39	85	5	198	25	21	27	25	2.00
15184298--15184466	84	2.0	85	95	1	304	26	15	15	42	1.87
15187873--15187897	9	2.8	9	100	0	50	40	60	0	0	0.97
15191677--15192091	48	8.6	48	76	6	392	26	19	28	26	1.99
15191658--15191990	96	3.5	96	91	0	522	25	19	29	26	1.99
15191677--15192089	144	2.9	142	83	3	468	25	19	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15191662--15192087	96	4.4	94	85	3	442	26	19	28	26	1.99
15191913--15192094	98	1.9	96	82	4	231	27	18	26	27	1.98
15194407--15194442	18	2.0	18	100	0	72	16	27	11	44	1.82
15197040--15197103	33	2.0	32	84	3	83	20	25	20	34	1.96
15197065--15197124	27	2.3	26	85	2	75	21	21	20	36	1.95
15197409--15197530	64	1.9	64	91	0	199	23	24	28	22	1.99
15211406--15211473	22	3.1	21	76	14	66	11	30	35	22	1.90
15211417--15211473	22	2.6	22	88	0	87	12	31	35	21	1.90
15215252--15215361	57	1.9	57	98	0	211	44	9	19	27	1.80
15215490--15215748	129	2.0	130	95	0	466	32	18	17	30	1.95
15215763--15215940	40	4.5	40	85	4	209	24	29	23	23	1.99
15224300--15224471	46	3.7	46	78	10	197	28	28	21	21	1.99
15224305--15224475	93	1.8	93	92	0	288	28	29	21	21	1.98
15227016--15227060	20	2.2	20	88	0	63	35	13	2	48	1.54
15228718--15228903	48	3.9	48	84	5	241	33	30	19	17	1.95
15228718--15228903	96	1.9	96	87	6	270	33	30	19	17	1.95
15230955--15230983	13	2.2	13	100	0	58	20	20	37	20	1.94
15230974--15231099	66	1.9	66	83	6	166	29	30	23	16	1.96
15232184--15232322	43	3.3	43	78	11	137	32	23	19	24	1.98
15238270--15238296	13	2.1	13	100	0	54	14	37	33	14	1.88
15240664--15240841	48	3.7	48	88	3	277	34	30	19	15	1.93
15240666--15240839	96	1.8	96	94	0	312	34	31	18	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15253193--15253469	50	5.5	49	76	4	257	25	16	27	30	1.97
15253238--15253419	101	1.8	101	87	0	274	25	17	26	29	1.98
15253193--15253477	151	1.9	151	88	1	428	24	17	27	30	1.97
15254123--15254198	39	1.9	39	91	0	125	46	11	5	36	1.63
15260895--15261079	101	1.8	101	92	0	316	25	20	26	28	1.99
15260846--15261076	50	4.6	50	80	5	250	25	18	26	28	1.98
15261643--15261997	180	2.0	180	85	2	480	38	8	18	34	1.82
15267452--15267634	80	2.3	80	83	3	228	30	22	15	31	1.95
15267655--15267779	44	2.9	44	80	7	150	26	27	17	28	1.98
15267781--15268008	44	5.3	43	76	11	191	28	25	17	29	1.97
15267712--15267854	73	2.0	73	92	0	241	25	26	16	32	1.96
15267796--15267920	41	3.0	40	76	11	133	28	24	18	29	1.98
15267781--15268019	85	2.8	84	83	9	286	27	25	17	30	1.97
15272906--15272938	17	1.9	17	93	0	57	18	6	6	69	1.30
15273361--15273403	17	2.4	17	84	7	50	6	25	46	20	1.76
15274032--15274099	28	2.4	28	76	9	75	26	22	22	29	1.99
15289912--15289990	37	2.1	37	90	0	122	24	18	31	25	1.98
15292011--15292060	1	50.0	1	79	0	55	2	2	6	90	0.61
15292002--15292066	14	4.8	13	83	14	62	4	1	7	86	0.77
15292002--15292053	11	4.6	11	88	4	77	3	0	7	88	0.62
15292002--15292052	23	2.2	23	92	0	84	3	0	7	88	0.63
15292002--15292060	23	2.6	22	84	5	64	3	1	6	88	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15301675--15301765	28	3.2	28	87	4	130	30	23	24	21	1.99
15301871--15301935	28	2.3	28	97	0	121	30	7	27	33	1.85
15309554--15309644	28	3.2	28	89	4	130	31	24	24	19	1.98
15309750--15310570	28	29.3	28	99	0	1633	32	7	25	35	1.83
15314439--15314547	25	4.4	25	74	19	77	60	0	5	33	1.26
15314402--15314497	51	1.9	49	81	12	115	57	0	8	34	1.29
15314476--15314547	5	14.4	5	70	21	53	61	1	2	34	1.19
15314444--15314525	8	10.4	8	71	20	57	60	0	6	32	1.21
15318328--15318386	30	2.0	30	83	6	75	30	25	5	38	1.77
15329785--15329857	32	2.3	32	85	0	101	24	23	28	23	1.99
15337060--15337094	18	2.0	18	94	5	63	11	25	45	17	1.81
15338644--15338713	34	2.1	34	97	0	131	17	34	14	34	1.90
15342752--15342873	43	2.8	43	87	2	165	26	27	21	25	1.99
15350708--15350790	43	1.9	43	87	0	121	31	26	19	22	1.98
15369831--15370127	48	6.1	48	86	2	335	28	27	15	28	1.96
15377289--15377596	27	11.6	27	80	6	299	40	20	8	30	1.83
15377289--15377596	81	3.8	79	79	9	331	40	20	8	30	1.83
15377610--15377777	27	6.2	27	87	0	237	30	22	7	39	1.82
15377608--15377777	81	2.1	81	91	0	277	31	21	7	39	1.82
15377327--15377806	54	8.9	54	77	7	183	36	21	8	34	1.84
15377759--15377864	54	2.0	53	81	1	122	42	20	7	29	1.80
15377648--15377833	81	2.3	81	81	3	196	34	21	7	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15377797--15377894	27	3.7	27	83	5	110	42	23	8	25	1.81
15377825--15377894	26	2.7	26	88	2	104	40	24	10	25	1.86
15377879--15378233	27	13.3	27	90	0	464	32	19	23	25	1.98
15378171--15378222	26	2.1	24	92	7	86	23	15	34	26	1.94
15378642--15378752	31	3.5	31	88	1	150	20	16	13	49	1.79
15378642--15378761	6	19.3	6	67	19	59	20	15	14	49	1.80
15386800--15386827	12	2.3	12	100	0	56	71	0	14	14	1.15
15395528--15395566	21	1.9	21	89	5	62	20	28	38	12	1.89
15397577--15397617	18	2.2	19	91	4	66	46	4	7	41	1.53
15398412--15398453	21	2.0	21	90	0	66	33	4	11	50	1.60
15408127--15408165	19	2.1	19	85	0	51	71	7	5	15	1.26
15408629--15408718	27	3.2	27	81	7	101	32	24	24	18	1.97
15408825--15408888	28	2.3	28	86	5	85	31	9	25	34	1.87
15417089--15417120	16	2.0	16	93	0	55	34	0	0	65	0.93
15418288--15418329	22	1.9	22	85	0	57	35	0	7	57	1.26
15428881--15428928	25	1.9	25	84	16	64	39	25	18	16	1.91
15431587--15431635	14	3.5	15	70	13	50	69	0	28	2	1.00
15443702--15443745	15	2.9	15	82	0	61	54	13	13	18	1.71
15453005--15453083	37	2.1	37	88	0	113	26	30	18	24	1.98
15453202--15454332	47	24.1	47	97	0	2003	29	28	8	33	1.87
15464769--15464868	39	2.6	39	85	1	130	36	5	10	49	1.58
15468463--15468498	14	2.6	14	91	4	56	27	0	33	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15472586--15472642	29	2.0	29	85	0	78	33	26	14	26	1.94
15476922--15476947	8	3.2	8	100	0	52	30	0	23	46	1.53
15477363--15477420	25	2.3	25	87	0	80	22	18	22	36	1.95
15478655--15478743	25	3.6	25	86	3	99	25	22	23	28	1.99
15483569--15483597	14	2.1	14	100	0	58	20	6	34	37	1.80
15489295--15489323	4	7.5	4	92	7	51	0	20	0	79	0.74
15491928--15492114	94	2.0	94	97	0	356	46	12	10	31	1.74
15503398--15503459	25	2.5	25	86	5	90	27	19	24	29	1.98
15503448--15503503	25	2.3	26	81	9	64	26	14	23	35	1.93
15510503--15510558	25	2.2	25	81	6	69	17	21	26	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172