genome.fa.s10.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  147  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48281527--48281572	10	4.4	11	74	20	53	30	0	6	63	1.20
48282352--48282396	20	2.3	20	79	17	51	48	0	4	46	1.22
48284059--48284099	18	2.2	20	82	8	50	19	0	12	68	1.21
48284100--48284132	11	2.9	12	86	13	52	66	0	0	33	0.92
48298385--48299004	310	2.0	310	99	0	1231	42	9	11	36	1.74
48300314--48300347	6	5.8	6	86	6	52	32	32	2	32	1.73
48302593--48302640	21	2.2	21	79	13	53	47	2	2	47	1.25
48306139--48306178	18	2.2	18	86	4	53	12	27	0	60	1.33
48307241--48307292	14	3.8	13	92	7	86	19	9	0	71	1.13
48307241--48307295	27	2.0	27	96	3	101	21	10	0	67	1.21
48307334--48307377	12	3.6	12	84	3	52	13	4	6	75	1.17
48307333--48307377	13	3.5	13	87	3	65	13	4	6	75	1.15
48307897--48308004	54	2.0	54	98	0	207	34	18	15	31	1.92
48315671--48315766	34	2.8	34	67	22	83	60	7	6	26	1.47
48317115--48317412	133	2.2	133	87	0	434	30	20	18	30	1.97
48317254--48317824	177	3.2	176	88	1	793	29	21	18	29	1.97
48322459--48322504	21	2.2	21	84	7	58	56	8	10	23	1.61
48327545--48327715	47	3.6	47	80	4	166	30	26	16	25	1.97
48329790--48329858	36	1.9	36	87	0	102	23	31	15	28	1.95
48331276--48331321	23	2.0	23	84	12	60	45	10	6	36	1.65
48331283--48331327	23	2.0	23	82	8	56	40	13	8	37	1.76
48334360--48334485	63	2.0	63	98	0	243	39	7	17	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48337731--48337887	29	5.4	29	73	4	129	17	15	36	29	1.92
48337701--48337888	57	3.3	56	90	1	277	18	16	36	28	1.93
48337703--48337857	28	5.5	28	74	4	141	17	18	35	29	1.93
48342830--48342908	28	2.8	28	86	0	104	34	11	25	29	1.91
48350195--48350241	24	1.9	25	87	12	71	29	8	0	61	1.25
48350344--48350386	15	3.0	14	83	6	59	30	9	11	48	1.71
48351180--48351239	10	6.0	10	81	11	70	21	10	1	66	1.30
48355114--48355146	12	2.6	13	85	9	50	9	45	0	45	1.35
48355763--48355827	28	2.3	28	94	0	112	33	27	7	30	1.85
48355933--48356022	28	3.2	27	85	7	119	20	24	23	32	1.98
48355933--48356047	55	2.1	56	82	8	137	19	23	21	35	1.96
48359663--48359715	5	10.8	5	81	18	67	20	1	0	77	0.87
48361285--48361334	10	5.0	10	81	13	59	22	8	2	68	1.26
48369163--48369300	42	3.3	41	85	5	161	33	2	9	54	1.48
48370160--48370197	20	1.9	20	88	0	58	52	2	0	44	1.14
48372465--48372523	25	2.3	26	94	2	102	40	6	11	40	1.68
48372956--48373017	18	3.3	18	69	20	54	56	0	6	37	1.25
48373459--48373485	13	2.1	13	100	0	54	77	0	0	22	0.76
48386014--48386054	21	2.0	21	90	0	64	29	21	29	19	1.98
48388789--48388980	96	2.0	96	98	0	375	25	25	16	32	1.96
48394360--48394482	42	2.9	42	86	0	165	43	17	20	17	1.88
48397057--48397083	2	13.5	2	100	0	54	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48403950--48404012	26	2.4	26	84	12	76	52	0	6	41	1.27
48404131--48404194	31	2.1	31	96	0	119	34	10	12	42	1.78
48405217--48405310	30	3.1	30	93	1	152	25	25	6	42	1.78
48405227--48405304	15	5.2	15	70	11	70	25	23	7	43	1.80
48409880--48410003	30	4.1	30	90	1	185	26	22	6	44	1.77
48409890--48409997	15	7.2	15	66	12	69	26	20	7	45	1.77
48412590--48412839	83	3.0	83	99	0	491	31	14	8	46	1.74
48415055--48415118	29	2.2	29	100	0	128	21	34	25	18	1.96
48415063--48415126	29	2.4	27	87	12	89	25	37	23	14	1.92
48416052--48416162	53	2.1	53	93	3	188	44	10	10	34	1.74
48439557--48439649	38	2.3	40	76	18	97	41	6	4	47	1.49
48440084--48440152	16	4.2	16	92	3	120	24	1	37	36	1.65
48440084--48440152	33	2.1	32	94	2	120	24	1	37	36	1.65
48440388--48440422	18	2.0	17	88	5	52	54	0	0	45	0.99
48440508--48440542	18	2.0	17	88	5	52	54	0	0	45	0.99
48440371--48440633	120	2.2	120	100	0	526	48	4	2	44	1.37
48453783--48453851	32	2.2	32	97	0	129	21	13	14	50	1.76
48455007--48455049	18	2.4	18	88	7	61	65	4	0	30	1.13
48459906--48459941	2	18.0	2	100	0	72	0	50	0	50	1.00
48464227--48464254	3	9.3	3	100	0	56	67	0	0	32	0.91
48466146--48466232	19	4.7	19	72	19	67	56	1	6	35	1.34
48466145--48466232	18	4.8	19	77	15	78	56	1	6	35	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48468468--48468503	15	2.4	15	90	0	54	27	16	0	55	1.42
48468687--48468716	16	1.9	15	93	6	51	56	0	13	30	1.37
48477318--48477376	28	2.1	28	100	0	118	30	20	6	42	1.78
48486342--48486378	16	2.3	17	81	13	51	59	0	0	40	0.97
48486391--48486417	7	3.9	7	100	0	54	44	11	0	44	1.39
48490860--48491038	43	4.2	43	87	2	245	34	20	21	24	1.97
48495314--48495346	15	2.1	16	88	11	50	69	0	0	30	0.88
48504254--48504420	9	17.6	9	77	10	163	31	0	21	46	1.56
48504287--48504403	39	3.0	39	96	0	207	32	0	22	45	1.53
48504269--48504408	39	3.4	43	83	13	170	31	0	22	45	1.58
48504254--48504420	57	2.9	58	82	6	198	31	0	21	46	1.56
48504254--48504409	48	3.2	48	80	3	188	32	0	22	44	1.58
48504600--48505086	241	2.0	241	95	0	875	33	14	17	34	1.91
48508626--48508741	37	3.1	37	83	8	128	26	12	46	14	1.80
48510117--48510167	21	2.4	21	96	0	93	47	15	7	29	1.74
48510159--48510201	14	3.0	14	75	3	50	53	25	0	20	1.46
48510635--48510738	40	2.6	38	78	14	104	21	20	20	38	1.94
48511276--48511326	25	2.0	25	100	0	102	52	3	11	31	1.56
48522510--48522561	15	3.2	15	73	19	50	53	1	1	42	1.23
48522920--48522973	26	2.2	24	87	12	74	44	3	7	44	1.49
48522938--48523010	37	2.0	37	100	0	146	49	1	8	41	1.41
48540026--48540234	105	2.0	104	96	0	382	38	13	22	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48547580--48547613	17	1.9	17	88	5	50	55	0	11	32	1.36
48551617--48551674	30	1.9	30	82	10	73	60	12	5	22	1.51
48560816--48560869	25	2.2	25	82	0	63	59	1	1	37	1.19
48562760--48562794	15	2.4	15	85	4	54	74	0	0	25	0.82
48562862--48562917	17	3.3	16	80	9	58	46	8	0	44	1.34
48563851--48563958	55	2.0	54	96	1	198	30	12	16	39	1.86
48573499--48573676	83	2.2	81	87	2	248	46	13	7	32	1.72
48573498--48573728	83	2.9	82	80	7	213	46	12	8	32	1.71
48576138--48576203	29	2.2	30	86	10	91	22	24	10	42	1.85
48583621--48583679	30	2.0	30	90	6	93	22	38	25	13	1.90
48607994--48608333	171	2.0	171	97	0	635	42	16	17	23	1.88
48609950--48610010	13	4.8	13	79	4	70	32	6	21	39	1.79
48609952--48610010	25	2.3	26	82	5	84	30	6	22	40	1.79
48619499--48619949	196	2.3	196	78	5	426	30	19	10	40	1.85
48619951--48620026	35	2.2	35	97	2	145	34	13	7	44	1.72
48626088--48626125	2	19.0	2	88	0	58	44	0	55	0	0.99
48626987--48627032	19	2.3	21	85	7	60	36	6	4	52	1.47
48626997--48627065	22	3.1	23	68	19	56	37	2	5	53	1.40
48634326--48634369	22	2.0	22	86	8	63	38	9	6	45	1.63
48634348--48634451	52	2.0	53	98	1	201	41	13	10	34	1.79
48640846--48640981	23	5.9	21	70	17	83	19	4	35	41	1.71
48649202--48649237	2	18.0	2	88	0	54	52	2	0	44	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48649721--48649785	29	2.2	29	97	0	121	41	23	0	35	1.55
48649960--48650073	56	2.0	56	98	0	219	23	11	7	57	1.57
48655699--48655874	85	2.1	85	95	0	316	36	14	13	35	1.85
48656219--48656419	89	2.2	89	83	1	249	34	20	10	33	1.88
48656516--48656576	19	3.2	19	88	6	88	72	0	6	21	1.07
48656525--48656576	10	5.3	10	76	4	61	73	0	3	23	1.00
48656525--48656601	29	2.7	29	76	6	50	67	0	3	28	1.08
48656525--48656602	9	8.2	9	76	10	66	67	0	3	28	1.07
48656860--48656966	57	1.9	56	81	9	128	28	3	4	63	1.31
48656956--48657004	19	2.7	18	78	9	64	36	2	0	61	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172