genome.fa.s10.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  168  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55092913--55094317	281	5.0	281	86	5	1786	33	9	22	35	1.86
55095620--55095758	75	1.9	75	90	0	224	28	21	13	35	1.92
55099392--55099589	99	2.0	99	93	1	335	32	12	19	35	1.89
55100613--55100948	168	2.0	167	95	0	609	25	17	13	43	1.86
55105203--55105251	14	3.6	14	72	10	57	12	16	16	55	1.70
55105201--55105255	26	2.1	26	100	0	110	18	14	16	50	1.77
55106281--55106364	33	2.5	34	80	5	91	35	2	32	29	1.71
55106793--55106843	15	3.4	15	81	10	59	37	7	0	54	1.29
55109132--55109165	16	2.1	16	88	5	50	44	0	2	52	1.16
55113383--55113871	189	2.6	189	85	3	653	33	20	18	27	1.96
55116782--55116840	23	2.7	21	74	23	59	50	3	10	35	1.53
55117090--55117140	3	17.0	3	88	8	77	66	1	0	31	1.03
55124832--55124866	3	11.7	3	87	0	52	0	40	0	60	0.97
55126768--55126854	44	2.0	44	97	0	165	36	12	16	34	1.86
55127773--55128316	189	2.9	187	83	6	648	31	19	18	30	1.96
55130472--55130551	25	3.3	25	68	16	78	56	7	1	35	1.36
55130460--55130551	47	2.0	47	97	0	175	53	7	2	36	1.42
55135573--55135861	41	7.0	39	83	11	312	29	19	23	27	1.98
55135586--55135819	85	2.8	84	93	4	386	27	19	23	29	1.98
55135579--55135862	82	3.4	82	88	7	387	28	19	24	27	1.99
55144067--55144116	24	2.1	24	100	0	100	32	8	28	32	1.86
55146453--55146480	2	14.0	2	100	0	56	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55149148--55149187	19	1.9	19	85	14	53	32	12	0	55	1.38
55158344--55158384	21	1.9	22	85	14	59	56	4	0	39	1.21
55161661--55161685	9	2.8	9	100	0	50	56	12	0	32	1.36
55164004--55164034	15	2.0	16	93	6	55	41	0	0	58	0.98
55167334--55167375	21	2.0	20	86	4	57	78	0	21	0	0.75
55179553--55179604	19	2.7	21	70	27	51	48	3	3	44	1.39
55181545--55181581	18	2.0	19	89	5	58	40	10	0	48	1.38
55182180--55182238	31	1.9	31	85	0	82	45	8	10	35	1.68
55196682--55196773	48	1.9	48	100	0	184	38	10	8	42	1.71
55198033--55198077	21	2.1	21	95	0	81	20	20	6	53	1.67
55205329--55205358	14	2.1	14	93	0	51	40	13	13	33	1.83
55207495--55207565	32	2.2	32	92	0	115	45	11	18	25	1.82
55208851--55208886	18	2.0	18	88	0	54	61	0	2	36	1.11
55208947--55209015	16	4.2	16	92	3	120	24	1	37	36	1.65
55208947--55209015	33	2.1	32	94	2	120	24	1	37	36	1.65
55208996--55209086	45	2.0	45	85	2	121	27	6	28	37	1.82
55209251--55209285	18	2.0	17	88	5	52	54	0	0	45	0.99
55209371--55209405	18	2.0	17	88	5	52	54	0	0	45	0.99
55209234--55209455	120	1.9	120	99	0	435	48	5	1	44	1.37
55212702--55212740	11	3.5	11	100	0	78	43	10	38	7	1.67
55213675--55213734	27	2.2	27	85	5	77	68	3	0	28	1.05
55213690--55213749	26	2.3	26	78	16	70	68	5	3	23	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55214168--55214228	29	2.1	30	84	9	81	27	4	1	65	1.22
55219212--55219237	13	2.0	13	100	0	52	38	7	23	30	1.83
55221992--55222031	21	1.9	21	89	0	62	47	5	10	37	1.59
55227643--55227837	38	5.0	38	86	3	230	31	25	21	21	1.98
55230293--55230340	23	2.1	23	88	7	71	41	0	16	41	1.48
55235220--55235274	28	2.0	28	88	0	83	25	0	9	65	1.22
55241257--55241354	10	10.4	9	72	19	76	66	2	2	29	1.14
55241265--55241354	19	4.8	18	80	12	76	66	2	1	30	1.11
55241267--55241359	29	3.2	29	75	10	93	65	2	1	31	1.11
55241282--55241393	10	11.5	10	69	16	58	63	0	2	33	1.15
55241649--55241724	9	8.1	9	69	22	50	34	2	0	63	1.09
55241658--55241700	21	2.1	20	86	4	59	32	2	0	65	1.06
55241679--55241719	9	4.7	9	85	14	59	31	0	0	68	0.90
55241680--55241717	16	2.2	18	90	9	62	31	0	0	68	0.90
55241678--55241736	25	2.2	25	80	16	66	30	3	0	66	1.08
55241648--55241739	28	3.4	25	78	15	78	33	3	0	63	1.11
55242003--55242028	9	2.9	9	100	0	52	0	42	0	57	0.98
55242611--55242711	6	16.8	6	89	0	121	5	48	14	30	1.68
55245982--55246056	28	2.6	27	83	10	80	54	2	5	37	1.37
55263494--55263521	8	3.5	8	100	0	56	0	10	0	89	0.49
55270199--55270316	57	2.1	57	95	0	209	44	16	11	27	1.82
55272491--55272522	1	32.0	1	100	0	64	0	0	100	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55278729--55278798	29	2.3	31	85	4	90	50	14	12	22	1.77
55278730--55278798	31	2.3	29	85	5	84	50	14	13	21	1.76
55279380--55279413	16	2.1	16	88	0	50	32	8	14	44	1.76
55284374--55284423	20	2.4	20	80	16	57	6	10	4	80	1.02
55286350--55286386	19	2.0	19	89	5	58	56	0	0	43	0.99
55292623--55292657	14	2.5	14	95	0	61	65	2	5	25	1.28
55299972--55300018	23	2.0	23	100	0	94	42	17	8	31	1.79
55303310--55303342	13	2.5	14	85	14	52	48	6	6	39	1.53
55310038--55310082	18	2.5	18	81	0	54	42	17	6	33	1.76
55311455--55311487	18	1.9	18	88	11	52	36	0	9	54	1.32
55315957--55315997	14	3.2	14	80	19	54	63	0	0	36	0.95
55315976--55316012	15	2.4	16	86	13	51	64	0	2	32	1.07
55315964--55316000	18	2.1	18	89	0	56	64	0	0	35	0.94
55326533--55326585	21	2.7	19	76	21	63	58	1	3	35	1.27
55326621--55326698	26	2.9	26	75	3	75	61	3	1	33	1.22
55326592--55326728	38	3.7	36	77	11	125	61	2	2	32	1.26
55326592--55326733	19	7.6	18	67	14	65	61	2	2	33	1.25
55326744--55326804	19	3.3	17	81	11	59	70	3	1	24	1.11
55326592--55326788	9	21.2	9	66	18	68	62	3	2	31	1.25
55326744--55326788	16	2.6	18	86	10	58	68	4	0	26	1.08
55327066--55327209	9	15.4	9	65	24	59	33	4	0	61	1.22
55327061--55327099	19	2.1	19	85	9	53	20	12	0	66	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55327066--55327144	28	2.7	30	84	9	92	32	6	0	60	1.22
55327103--55327140	19	2.0	19	90	10	60	36	5	0	57	1.21
55327121--55327174	25	2.2	25	82	0	63	35	3	1	59	1.26
55327198--55327243	17	2.9	16	84	15	53	28	2	2	67	1.14
55328086--55328116	14	2.1	15	94	5	55	48	0	0	51	1.00
55333574--55333601	6	4.7	6	100	0	56	0	17	0	82	0.68
55344682--55344714	3	11.0	3	100	0	66	33	33	0	33	1.58
55348460--55348488	14	2.1	14	93	6	51	13	3	0	82	0.79
55353843--55353886	19	2.4	18	85	7	54	36	0	4	59	1.18
55354486--55354556	29	2.4	30	80	4	90	43	14	8	33	1.75
55362116--55362174	30	2.0	30	89	0	91	25	5	10	59	1.50
55370647--55370686	19	2.1	19	85	0	53	40	20	7	32	1.80
55371464--55371546	39	2.1	39	88	0	121	21	18	38	21	1.93
55372340--55372407	29	2.3	30	87	2	93	48	5	5	39	1.52
55372714--55372739	13	2.0	13	100	0	52	46	0	0	53	1.00
55376883--55376919	19	1.9	19	88	0	56	62	0	13	24	1.31
55383378--55383431	20	2.8	21	78	16	62	38	0	0	61	0.96
55383302--55383411	58	1.9	58	83	5	134	32	4	0	61	1.22
55383626--55383654	12	2.5	12	94	5	51	10	6	6	75	1.17
55383787--55383813	14	1.9	14	100	0	54	66	0	3	29	1.09
55389614--55389651	6	6.0	6	93	6	58	78	0	15	5	0.91
55401208--55401282	29	2.5	30	77	18	77	60	4	4	32	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55407698--55407729	14	2.3	14	100	0	64	31	46	15	6	1.71
55408535--55408566	3	10.7	3	93	0	55	65	0	0	34	0.93
55408643--55408677	3	11.7	3	87	0	52	62	0	0	37	0.95
55408527--55408856	111	3.0	111	98	1	630	42	20	6	31	1.76
55408754--55408788	3	11.7	3	87	0	52	62	0	0	37	0.95
55409146--55409202	10	5.5	10	80	14	62	33	1	1	63	1.15
55409142--55409192	22	2.3	22	80	10	59	31	0	1	66	1.03
55414875--55414933	23	2.5	23	91	8	93	49	10	3	37	1.54
55421020--55421055	12	3.0	12	95	0	63	0	55	16	27	1.42
55421019--55421054	18	2.0	18	94	0	63	0	58	16	25	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172