genome.fa.s10.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  138  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45523249--45523273	13	1.9	13	100	0	50	68	0	0	32	0.90
45523407--45523448	17	2.5	17	88	7	59	54	4	7	33	1.49
45524482--45524598	30	3.9	30	77	3	103	41	4	24	29	1.74
45524482--45524598	60	2.0	59	81	5	137	41	4	24	29	1.74
45524595--45524640	24	1.9	24	95	0	83	26	0	2	71	0.97
45524780--45525109	78	4.3	78	78	10	315	36	18	16	29	1.93
45524826--45525090	79	3.4	76	81	5	284	32	20	15	32	1.94
45524944--45525422	83	5.7	83	82	4	504	36	20	15	28	1.92
45524871--45525420	166	3.3	169	78	8	469	35	20	15	28	1.93
45525346--45525375	14	2.1	14	93	0	51	66	3	6	23	1.30
45524944--45525418	253	1.9	249	85	2	664	36	20	14	28	1.92
45524871--45525422	170	3.3	166	78	8	549	35	19	15	28	1.93
45537288--45537417	30	4.4	30	83	6	142	43	2	20	33	1.65
45537414--45537459	24	1.9	24	91	8	76	26	0	2	71	0.97
45549380--45549454	25	3.0	25	80	7	89	28	22	37	12	1.90
45549522--45549673	79	1.9	77	88	5	225	36	3	36	22	1.73
45550551--45550653	41	2.5	41	90	0	161	19	22	19	38	1.93
45551135--45551184	25	2.0	25	88	0	73	20	22	18	40	1.92
45560452--45560494	15	2.9	14	80	13	50	55	0	2	41	1.12
45564990--45565022	17	1.9	17	100	0	66	36	3	0	60	1.12
45566084--45566131	25	1.9	25	82	0	60	29	0	2	68	1.01
45566791--45566834	19	2.3	18	81	11	52	47	4	9	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45567011--45567063	27	2.0	27	85	7	72	43	3	0	52	1.19
45568480--45568572	46	2.0	46	93	0	159	33	5	26	34	1.79
45571721--45571780	23	2.9	22	78	14	56	68	8	23	0	1.16
45572548--45572799	18	13.3	18	68	13	103	37	13	11	37	1.80
45573051--45573077	6	4.5	6	100	0	54	48	14	18	18	1.82
45572963--45573071	45	2.4	45	92	0	182	43	20	18	18	1.89
45574835--45574875	5	8.6	5	89	10	68	60	0	0	39	0.96
45574968--45575020	21	2.5	22	78	9	65	58	3	0	37	1.16
45582005--45582041	2	18.5	2	88	0	56	48	0	0	51	1.00
45591434--45591460	3	9.0	3	100	0	54	66	0	0	33	0.92
45593463--45593535	9	8.6	9	68	25	52	54	19	1	24	1.52
45593463--45593516	23	2.5	21	84	6	63	53	18	1	25	1.54
45593683--45593791	50	2.1	52	86	6	152	43	13	11	32	1.79
45599898--45599928	1	31.0	1	100	0	62	0	0	0	100	0.00
45613729--45613846	59	2.0	59	100	0	236	38	16	6	37	1.76
45613847--45613963	58	2.0	58	100	0	234	25	15	20	38	1.92
45618638--45618677	21	1.9	21	89	0	62	30	0	5	65	1.14
45618865--45618930	19	3.4	19	75	12	53	43	0	0	56	0.99
45618877--45618930	28	2.0	27	85	3	72	44	0	0	55	0.99
45621498--45621534	18	2.1	18	89	0	56	37	2	2	56	1.28
45621960--45622005	23	2.0	23	91	4	76	10	15	13	60	1.58
45624706--45624753	3	16.0	3	91	0	69	60	2	4	33	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45625161--45625187	11	2.5	11	100	0	54	7	0	0	92	0.38
45625761--45625794	17	2.0	17	100	0	68	5	0	41	52	1.25
45655068--45655127	19	3.3	18	69	21	54	31	8	3	56	1.45
45662962--45663114	76	2.0	76	100	0	306	37	18	22	21	1.94
45663197--45663243	22	2.1	22	88	0	67	36	6	23	34	1.80
45664323--45664374	26	2.0	26	100	0	104	50	11	26	11	1.73
45669504--45669544	13	3.1	14	75	10	50	46	7	17	29	1.74
45676293--45676327	16	2.2	17	90	10	56	62	0	14	22	1.31
45679690--45679730	13	3.1	14	75	10	50	46	14	19	19	1.84
45683872--45683915	10	4.7	9	80	8	52	11	4	2	81	0.92
45684715--45684763	25	2.0	24	84	4	62	44	10	8	36	1.68
45688500--45688600	27	3.7	27	87	0	130	31	23	6	37	1.82
45688480--45688603	27	4.6	27	77	7	108	33	21	8	37	1.83
45688595--45689004	27	15.3	27	88	0	563	33	20	20	24	1.97
45689431--45689486	22	2.5	22	75	11	60	19	21	21	37	1.94
45689705--45689762	25	2.3	25	81	0	71	22	20	12	44	1.84
45692787--45692817	16	1.9	16	93	0	53	19	6	9	64	1.45
45692921--45692960	18	2.2	18	86	0	53	25	5	2	67	1.23
45700829--45700869	16	2.4	16	92	8	64	68	0	4	26	1.10
45703200--45703264	32	2.0	32	100	0	130	30	6	24	38	1.80
45706102--45706212	54	2.1	54	98	0	213	25	18	13	42	1.87
45710452--45710502	24	2.2	24	82	3	59	31	0	3	64	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45714374--45714409	12	3.1	11	92	4	54	69	2	2	25	1.15
45714489--45714530	15	2.7	16	82	14	52	45	0	2	52	1.13
45714480--45714521	15	2.9	15	82	10	52	47	0	0	52	1.00
45714744--45714813	16	4.4	16	81	0	77	25	32	4	37	1.76
45719635--45719687	19	2.8	20	83	16	76	69	0	1	28	0.99
45719641--45719690	20	2.5	21	83	6	68	70	0	2	28	0.99
45721747--45721787	21	1.9	22	90	5	66	17	7	7	68	1.36
45738905--45738961	30	1.9	30	92	0	96	12	28	35	24	1.91
45749983--45750088	36	2.9	36	74	1	95	30	30	18	20	1.97
45750053--45750268	76	2.8	76	80	2	218	33	24	18	23	1.97
45755638--45755738	28	3.5	28	74	14	107	28	22	19	28	1.98
45755717--45755824	32	3.5	32	67	7	105	27	26	14	30	1.95
45755810--45755879	29	2.4	28	83	6	86	27	24	21	27	1.99
45755716--45755850	61	2.2	61	86	2	200	27	25	17	29	1.97
45756823--45756853	11	2.8	11	100	0	62	32	9	19	38	1.84
45761180--45761235	26	2.1	27	83	3	69	57	0	1	41	1.09
45761180--45761604	185	2.3	184	90	0	643	41	9	8	40	1.67
45761549--45761605	26	2.1	27	87	3	80	54	0	5	40	1.23
45763975--45764011	18	2.1	18	100	0	74	40	10	10	37	1.75
45767580--45767640	32	1.9	32	100	0	122	31	9	13	45	1.75
45768498--45768560	30	2.1	30	90	0	99	26	3	11	58	1.47
45771426--45771454	12	2.3	13	94	5	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45771727--45771807	24	3.3	26	80	13	82	41	2	0	55	1.13
45773815--45773853	18	2.2	18	90	9	62	51	5	0	43	1.24
45780190--45780218	10	3.0	10	95	5	51	51	0	0	48	1.00
45781008--45781055	22	2.2	22	85	7	62	60	2	0	37	1.09
45781005--45781054	25	2.0	24	81	11	57	62	2	0	36	1.07
45781741--45781769	6	4.8	6	100	0	58	0	48	0	51	1.00
45785351--45785384	17	2.0	17	100	0	68	29	5	29	35	1.81
45785640--45785682	20	2.2	20	86	0	59	27	2	9	60	1.40
45786696--45787173	239	2.0	239	81	3	559	30	23	13	32	1.93
45790931--45790999	16	4.2	16	92	3	120	24	1	37	36	1.65
45790931--45790999	33	2.1	32	94	2	120	24	1	37	36	1.65
45790980--45791070	45	2.0	45	85	2	121	27	6	28	37	1.82
45791235--45791269	18	2.0	17	88	5	52	54	0	0	45	0.99
45791355--45791389	18	2.0	17	88	5	52	54	0	0	45	0.99
45791218--45791741	120	4.4	120	96	1	939	48	4	2	44	1.37
45791475--45791509	18	2.0	17	88	5	52	54	0	0	45	0.99
45791764--45791972	92	2.3	91	85	6	226	46	4	3	45	1.41
45795009--45795118	33	3.3	33	81	11	136	31	8	17	42	1.78
45795065--45795167	51	2.0	51	96	3	190	28	7	18	45	1.77
45795242--45795508	86	3.1	86	99	0	527	47	7	4	40	1.53
45797314--45797500	76	2.5	76	100	0	374	40	22	11	25	1.88
45810082--45810113	16	2.0	16	93	0	55	46	0	3	50	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45830325--45830384	30	2.0	30	93	0	102	25	1	15	58	1.46
45830460--45830507	19	2.5	19	74	12	53	29	0	6	64	1.18
45830467--45830507	19	2.1	20	86	4	57	26	0	7	65	1.18
45833178--45833215	19	2.1	18	90	5	58	5	34	0	60	1.19
45835541--45835589	3	16.3	3	95	0	89	67	2	0	30	1.02
45835756--45835851	14	7.1	14	69	25	73	58	2	3	36	1.26
45835791--45835858	17	3.7	17	73	21	57	58	4	1	35	1.27
45836049--45836105	24	2.4	24	81	0	69	61	8	3	26	1.42
45839074--45839106	7	4.7	7	100	0	66	30	0	27	42	1.56
45848500--45848887	192	2.0	193	94	0	679	25	14	20	39	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172