genome.fa.s10.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  107  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35830741--35830790	19	2.5	20	87	6	75	80	0	20	0	0.72
35830743--35830798	6	9.7	6	76	7	62	78	0	21	0	0.75
35831471--35831504	18	1.9	18	88	5	52	29	17	11	41	1.85
35832543--35832614	28	2.6	28	82	10	85	30	34	11	23	1.90
35840076--35840145	28	2.5	28	80	13	81	28	35	12	22	1.91
35842302--35842742	181	2.5	176	84	5	532	33	15	21	29	1.94
35842929--35843209	143	2.0	143	81	0	328	28	19	23	28	1.98
35843126--35843526	180	2.2	185	84	3	508	31	16	23	28	1.96
35843079--35843526	45	9.9	44	73	10	287	31	17	22	28	1.97
35843126--35843526	96	4.4	95	74	9	334	31	16	23	28	1.96
35843266--35843527	140	1.9	140	84	4	350	31	17	24	27	1.97
35843306--35843568	140	1.9	141	83	4	343	30	17	23	27	1.97
35843962--35843999	18	2.2	17	86	13	51	50	39	0	10	1.37
35844352--35844395	16	2.8	16	89	0	61	0	20	0	79	0.73
35845073--35845277	3	67.7	3	74	5	162	31	7	0	60	1.32
35845260--35845350	11	8.4	10	75	17	76	19	2	2	75	1.01
35845260--35845350	5	16.8	5	78	15	76	19	2	2	75	1.01
35845248--35845349	17	5.8	16	76	15	71	19	2	1	75	1.03
35849657--35849701	22	2.0	22	87	8	65	33	28	26	11	1.91
35850491--35850537	23	2.0	23	91	0	76	23	12	27	36	1.91
35856372--35856416	22	2.0	22	100	0	90	22	22	8	46	1.79
35857656--35857781	44	2.9	44	86	4	182	24	21	11	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35859643--35859691	20	2.3	21	86	10	64	36	6	4	53	1.45
35862545--35862728	71	2.5	72	88	3	271	22	24	28	25	1.99
35865250--35865432	21	8.8	20	72	9	100	42	16	21	19	1.89
35865297--35865439	42	3.4	41	80	7	182	43	14	21	20	1.87
35865253--35865413	62	2.6	63	76	6	141	42	16	21	19	1.88
35865255--35865450	42	4.7	42	73	12	170	44	15	21	18	1.87
35882665--35882699	17	2.1	17	89	5	54	74	0	2	22	0.95
35883688--35883818	69	1.9	70	88	1	201	28	17	24	29	1.97
35898887--35898921	17	2.1	17	89	5	54	54	20	5	20	1.64
35902351--35902380	15	2.0	15	93	0	51	0	13	3	83	0.77
35905221--35905251	16	1.9	16	93	0	53	32	25	0	41	1.56
35917782--35917869	29	3.1	29	70	15	92	46	20	10	22	1.80
35917780--35917900	57	2.1	58	83	11	160	42	21	10	24	1.84
35917827--35917904	29	2.7	28	78	5	84	39	23	12	24	1.89
35921509--35922099	196	3.0	196	97	0	1110	37	20	11	30	1.88
35934773--35934817	20	2.3	20	88	3	65	28	17	26	26	1.98
35934838--35934982	61	2.4	61	83	8	170	26	20	26	27	1.99
35937662--35937699	3	13.0	3	86	5	51	28	39	0	31	1.57
35939620--35939709	41	2.2	41	95	0	162	50	2	4	43	1.34
35939639--35939705	20	3.3	20	64	12	55	49	2	5	41	1.42
35940355--35940410	3	18.7	3	100	0	112	32	0	0	67	0.91
35944918--35944965	24	2.0	24	83	0	60	45	10	4	39	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35945043--35945080	3	12.7	3	94	0	67	31	0	2	65	1.06
35946561--35946632	20	3.6	20	78	12	76	63	1	1	33	1.11
35947830--35947864	12	2.9	12	91	0	61	14	28	0	57	1.38
35949647--35949896	89	2.9	89	84	7	307	32	11	14	42	1.81
35949836--35950101	87	3.0	85	82	8	261	36	9	10	43	1.72
35950135--35950174	14	2.9	14	84	0	53	32	7	17	42	1.77
35950143--35950209	35	1.9	35	87	3	100	31	10	13	44	1.77
35950158--35950197	20	2.0	20	85	0	53	27	12	12	47	1.77
35951739--35951764	13	2.0	13	100	0	52	46	15	15	23	1.83
35952735--35952775	6	6.8	6	97	0	64	0	4	9	85	0.73
35954556--35954718	84	1.9	84	88	0	245	30	7	9	52	1.62
35966290--35966319	12	2.6	12	94	5	53	30	40	0	30	1.57
35972505--35972537	14	2.3	15	89	5	50	33	0	9	57	1.30
35973909--35974116	103	2.0	103	88	0	308	47	14	16	21	1.82
35975169--35975215	17	2.8	18	81	9	55	44	2	10	42	1.51
35975793--35975873	40	2.0	40	97	0	153	35	7	20	35	1.81
35977812--35977870	24	2.5	23	86	10	84	18	11	3	66	1.38
35981120--35981150	7	4.6	7	96	4	55	16	0	35	48	1.46
35981208--35981955	266	2.8	261	83	3	912	39	16	16	28	1.90
35983398--35983442	22	2.1	22	88	12	67	44	0	8	46	1.34
35983973--35984034	25	2.5	24	75	10	63	33	0	0	66	0.92
35989304--35989337	3	11.3	3	100	0	68	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35992620--35992690	35	2.0	35	89	5	108	33	9	18	38	1.84
35994004--35994035	13	2.5	13	94	0	55	75	0	15	9	1.05
35996234--35996679	48	9.3	48	83	0	577	27	17	28	26	1.98
35996230--35996699	96	4.9	96	97	0	841	27	17	28	27	1.97
35997010--35997053	21	2.2	20	83	4	52	54	4	11	29	1.56
35997027--35997157	27	5.0	27	71	15	96	54	7	6	31	1.53
35997125--35997176	23	2.3	22	81	15	61	59	1	3	34	1.27
35997110--35997212	41	2.7	38	82	8	102	58	1	4	34	1.31
35996982--35997253	25	11.2	25	71	16	139	54	5	6	33	1.50
35997300--35997326	10	2.7	10	100	0	54	51	7	0	40	1.30
35997310--35997352	21	2.0	22	86	9	61	55	4	2	37	1.33
35997361--35997448	24	3.7	23	74	17	81	61	0	3	35	1.13
36005312--36005586	49	5.5	49	82	6	347	25	19	25	29	1.99
36005311--36005599	100	2.9	100	97	0	533	25	19	25	28	1.99
36013989--36014082	23	4.1	23	84	0	125	47	3	25	23	1.66
36018494--36018587	23	4.1	23	85	0	134	47	4	25	22	1.69
36027871--36027939	8	8.0	8	76	22	61	34	1	2	60	1.20
36027871--36027931	3	21.7	3	75	18	60	34	0	3	62	1.12
36027871--36027930	13	4.5	14	75	12	72	35	0	3	61	1.12
36031965--36032014	21	2.4	21	93	0	82	26	38	18	18	1.93
36044166--36044215	22	2.3	22	96	0	91	16	12	34	38	1.85
36046213--36046279	30	2.2	30	86	0	89	29	16	4	49	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36047829--36047985	56	2.8	56	83	4	183	27	13	24	34	1.93
36055635--36055690	26	2.2	26	96	0	103	30	8	25	35	1.86
36057178--36057230	26	2.0	26	85	7	72	37	22	15	24	1.92
36061468--36061502	18	1.9	18	94	0	61	42	0	20	37	1.52
36061549--36061662	48	2.4	47	79	4	140	28	11	21	37	1.89
36065235--36065300	19	3.4	19	76	17	55	53	0	0	46	1.00
36066959--36067020	31	1.9	33	83	6	83	50	1	1	46	1.20
36070981--36071005	5	5.0	5	100	0	50	20	0	0	80	0.72
36077148--36077183	19	1.9	19	88	5	56	44	0	11	44	1.39
36081964--36082040	38	2.0	38	100	0	154	23	20	20	35	1.96
36082007--36082286	48	5.9	48	73	9	207	24	28	19	28	1.98
36082007--36082276	96	2.8	95	81	3	305	23	28	20	28	1.99
36093150--36093343	81	2.4	81	87	5	284	42	21	17	19	1.89
36093150--36093343	27	7.2	27	85	5	250	42	21	17	19	1.89
36101378--36101556	46	3.9	46	78	10	202	20	21	29	28	1.98
36101377--36101549	93	1.9	93	91	0	283	20	21	30	27	1.98
36103806--36103942	67	2.0	67	94	0	238	43	11	34	10	1.76
36106680--36106738	30	1.9	31	86	3	84	49	1	18	30	1.58
36106976--36107020	11	3.9	11	80	11	54	35	0	2	62	1.08
36108860--36108999	46	3.1	46	85	5	178	44	12	22	20	1.85
36109280--36109312	17	2.0	17	94	5	59	48	0	15	36	1.45
36116288--36116344	26	2.2	26	96	0	105	42	26	0	31	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36117200--36117317	45	2.6	45	87	0	164	33	27	16	22	1.96
36125077--36125225	41	3.5	43	78	9	135	28	27	18	26	1.98
36125161--36125280	45	2.7	45	84	2	152	35	27	14	22	1.93
36132825--36132944	43	2.8	42	79	7	152	27	21	16	34	1.95
36139322--36139452	70	1.9	69	83	9	171	36	5	13	44	1.67
36150492--36150548	28	2.0	28	93	0	96	33	19	8	38	1.82
36152027--36152054	12	2.3	12	100	0	56	42	7	0	50	1.30
36156754--36156894	23	6.1	22	74	10	120	14	4	36	43	1.68
36156755--36156886	48	2.8	45	81	5	140	15	5	34	44	1.70
36167925--36167961	12	3.1	12	92	0	65	24	37	27	10	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172