genome.fa.s10.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  152  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49747498--49747620	17	6.8	18	87	10	96	36	14	11	37	1.82
49748238--49748871	121	5.3	119	94	1	1011	31	18	16	32	1.94
49748880--49748991	44	2.5	44	75	5	111	27	25	18	27	1.98
49749888--49749945	8	7.6	8	83	11	59	5	8	0	86	0.71
49749896--49749947	14	3.7	14	82	14	63	5	7	0	86	0.70
49749896--49749948	20	2.7	20	88	8	74	7	7	0	84	0.76
49749888--49749947	29	2.1	27	90	6	93	5	8	0	86	0.69
49753648--49753778	18	7.3	18	87	4	185	36	16	11	35	1.85
49753648--49753770	35	3.5	35	93	2	192	36	16	12	34	1.86
49753641--49753778	53	2.5	54	88	6	199	36	15	11	36	1.84
49758360--49758424	21	3.2	21	73	20	75	10	26	23	40	1.87
49758327--49758442	39	3.0	39	90	0	178	13	25	24	37	1.92
49763954--49764074	41	2.8	42	80	6	109	28	19	23	29	1.98
49766983--49767094	56	2.0	56	98	0	215	36	14	16	33	1.88
49769426--49769464	19	2.0	20	90	5	62	69	2	0	28	1.02
49769718--49769793	22	3.7	21	76	15	68	40	17	6	35	1.75
49769747--49769825	35	2.2	37	86	13	121	35	16	10	37	1.82
49769768--49769823	17	3.5	15	88	9	60	35	16	10	37	1.83
49769754--49769825	19	3.9	19	89	10	123	36	15	11	37	1.83
49769944--49769983	21	2.0	20	85	5	53	10	2	15	72	1.21
49770182--49770449	45	5.9	45	79	6	247	25	28	14	30	1.95
49770190--49770366	45	4.0	45	87	1	248	25	29	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49770190--49770359	89	1.9	89	88	0	259	26	29	14	30	1.95
49770389--49770683	78	3.8	78	90	0	428	25	24	17	31	1.97
49770634--49771341	219	3.2	219	95	0	1265	26	22	18	32	1.97
49771204--49771533	89	3.7	91	77	10	371	26	23	18	30	1.97
49771161--49771534	176	2.1	176	94	1	651	28	23	17	29	1.97
49771460--49771673	78	2.8	78	88	3	315	25	23	20	31	1.98
49779714--49779749	18	1.9	19	88	5	56	69	0	0	30	0.89
49780039--49780148	19	5.9	19	93	6	199	36	15	10	37	1.83
49780032--49780148	54	2.1	56	90	9	197	35	16	10	37	1.82
49782103--49782165	26	2.4	26	86	5	83	63	1	0	34	1.04
49784101--49784160	24	2.4	24	80	5	75	43	8	15	33	1.76
49784933--49784975	11	4.1	10	79	8	50	18	0	9	72	1.11
49787024--49787115	46	2.0	46	86	0	130	46	6	16	30	1.72
49800566--49801741	588	2.0	587	97	0	2219	31	13	18	36	1.90
49808719--49808754	15	2.4	15	95	0	63	33	11	33	22	1.89
49826342--49826369	5	5.6	5	100	0	56	82	0	0	17	0.68
49840805--49840886	26	3.2	26	98	0	155	36	25	7	30	1.83
49843137--49843194	26	2.2	26	81	6	64	31	0	1	67	1.01
49843618--49843676	18	3.2	18	78	9	57	33	5	0	61	1.18
49843624--49843718	21	4.7	20	71	17	79	40	3	0	56	1.15
49843624--49843719	10	9.4	10	71	18	58	39	3	0	57	1.15
49848473--49848519	11	4.5	11	79	15	55	0	6	19	74	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49848473--49848510	19	2.0	20	90	10	62	0	7	21	71	1.11
49848489--49848530	22	1.9	22	85	0	57	2	7	14	76	1.10
49854297--49854331	18	2.0	17	88	5	52	82	5	2	8	0.91
49854738--49854794	30	1.9	30	89	7	89	50	0	3	45	1.18
49856103--49856134	16	2.0	16	100	0	64	37	6	31	25	1.81
49856104--49856142	16	2.4	16	91	0	60	38	5	25	30	1.78
49858471--49858583	51	2.2	52	85	3	147	40	12	23	23	1.88
49859210--49859243	17	2.0	17	100	0	68	35	11	35	17	1.87
49862609--49862680	6	11.8	6	75	8	65	77	1	8	12	1.04
49862644--49862680	17	2.2	17	90	0	56	83	0	2	13	0.74
49863511--49863622	40	2.8	40	94	1	188	29	24	16	29	1.97
49863377--49863623	133	1.9	129	84	9	329	28	21	19	29	1.98
49863511--49863658	40	3.7	39	88	4	172	27	23	18	30	1.97
49865158--49865315	43	3.7	44	88	5	207	23	19	29	27	1.98
49869038--49869094	28	2.0	28	100	0	114	35	29	10	24	1.89
49876545--49876613	22	3.1	22	84	13	97	30	20	24	24	1.99
49878580--49878726	74	2.0	74	97	0	276	29	17	18	34	1.93
49878956--49878997	19	2.2	20	86	4	59	47	0	0	52	1.00
49878983--49879030	17	2.8	17	87	3	69	35	6	0	58	1.23
49882186--49882211	3	8.7	3	100	0	52	0	69	0	30	0.89
49885871--49885920	22	2.3	22	96	0	91	22	12	10	56	1.65
49890303--49890430	40	3.3	38	75	9	114	19	20	27	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49894834--49894943	26	4.2	26	97	0	184	36	24	5	33	1.79
49896746--49896802	10	5.5	11	79	14	59	21	8	1	68	1.26
49907491--49907537	25	2.0	25	83	8	62	27	14	4	53	1.60
49907798--49908060	46	5.7	46	93	0	402	21	24	15	38	1.92
49913394--49913448	18	2.9	19	91	5	94	34	18	10	36	1.86
49913567--49913605	21	1.9	20	84	5	51	12	2	12	71	1.24
49917852--49917897	17	2.6	18	83	13	51	28	6	8	56	1.54
49922161--49922225	32	2.0	32	96	0	121	46	15	18	20	1.84
49934418--49934480	30	2.1	30	100	0	126	57	9	17	15	1.65
49938965--49939027	21	3.1	21	77	8	60	33	1	3	61	1.21
49942171--49942240	24	3.0	23	71	19	56	45	5	0	48	1.26
49953545--49953569	4	6.2	4	100	0	50	76	0	24	0	0.80
49954333--49954443	47	2.4	47	83	6	145	26	16	22	35	1.95
49968344--49968400	30	1.9	30	92	0	96	14	28	36	21	1.92
49970227--49970294	6	11.7	6	81	12	61	75	1	1	22	0.97
49970254--49970294	21	1.9	22	90	5	66	80	2	2	14	0.92
49971928--49971982	28	2.0	28	82	7	67	67	1	9	21	1.28
49972318--49972381	29	2.2	29	82	0	83	20	25	31	23	1.98
49972326--49972388	29	2.2	29	82	0	72	15	25	34	23	1.95
49985695--49985744	19	2.9	16	76	21	55	38	0	2	60	1.09
49989993--49990017	10	2.5	10	100	0	50	68	12	12	8	1.40
49989295--49992424	985	3.2	985	85	4	4150	41	15	10	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50009341--50009378	19	2.0	19	100	0	76	57	10	10	21	1.61
50013972--50014049	39	2.0	39	85	5	104	39	29	10	20	1.85
50034039--50034104	33	2.0	33	90	0	105	37	19	18	24	1.93
50038342--50038380	20	1.9	20	84	5	51	56	20	5	17	1.60
50040121--50040158	20	1.9	20	94	0	67	28	0	5	65	1.14
50040148--50040229	16	4.4	18	66	20	53	30	1	3	64	1.18
50040185--50040235	19	2.7	20	79	11	63	31	0	0	68	0.90
50042606--50042641	18	1.9	18	88	5	54	63	0	30	5	1.17
50056310--50056349	21	1.9	21	89	0	62	55	10	10	25	1.64
50058920--50058954	15	2.3	15	90	0	52	37	8	8	45	1.65
50058963--50058995	2	16.5	2	100	0	66	51	0	48	0	1.00
50067327--50067367	21	2.0	21	90	0	64	60	17	2	19	1.46
50069046--50069080	18	1.9	18	88	0	52	48	0	0	51	1.00
50069159--50069206	17	2.8	18	78	9	55	58	0	0	41	0.98
50069971--50070015	24	1.9	23	86	4	63	28	17	20	33	1.95
50076370--50076419	19	2.8	17	82	17	50	42	10	8	40	1.68
50080884--50080975	39	2.3	39	88	5	132	25	28	22	23	2.00
50080865--50081028	40	4.1	40	80	10	176	24	27	23	25	2.00
50096037--50096067	2	15.5	2	100	0	62	51	0	48	0	1.00
50098642--50098666	6	4.2	6	100	0	50	32	16	52	0	1.44
50104360--50104387	13	2.2	13	100	0	56	71	0	0	28	0.86
50105561--50105594	15	2.4	14	95	5	59	14	2	44	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50105561--50105594	7	4.7	7	92	7	59	14	2	44	38	1.61
50111221--50111282	13	4.8	14	70	23	55	33	17	4	43	1.71
50111272--50111323	27	1.9	27	88	0	77	34	21	1	42	1.64
50111204--50111320	38	3.0	38	85	7	119	32	19	4	43	1.70
50111178--50111342	13	12.4	13	65	16	52	32	17	3	46	1.65
50111312--50111346	15	2.3	15	95	0	61	25	11	0	62	1.28
50112452--50112480	14	2.1	14	100	0	58	58	0	20	20	1.39
50123877--50123901	12	2.1	12	100	0	50	84	0	8	8	0.79
50127953--50128023	25	2.9	24	75	8	72	78	4	4	12	1.03
50127960--50128017	18	3.2	18	81	13	73	79	5	5	10	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172