genome.fa.s10.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  33  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10338096--10338178	43	1.9	44	85	2	114	48	7	9	34	1.64
10339839--10340176	112	3.0	112	100	0	676	28	16	9	44	1.80
10352106--10352160	26	2.1	26	100	0	110	54	3	23	18	1.59
10352807--10352853	7	6.7	7	92	0	67	31	2	8	57	1.41
10353472--10353506	18	1.9	18	94	0	61	28	28	2	40	1.71
10353772--10353861	45	2.0	45	100	0	180	26	37	22	13	1.91
10357135--10357482	126	2.8	126	83	3	432	28	18	17	35	1.94
10357135--10357526	126	3.1	125	81	3	421	29	17	16	36	1.92
10357654--10357721	26	2.6	26	97	0	127	42	13	0	44	1.43
10357719--10357753	17	1.9	17	88	11	52	54	28	0	17	1.43
10357733--10357781	22	2.2	22	88	0	71	51	34	0	14	1.43
10357752--10357815	32	2.0	33	87	9	96	42	43	0	14	1.45
10359784--10359848	32	2.0	32	93	0	112	47	3	15	33	1.61
10362900--10362961	32	1.9	32	96	0	115	37	12	17	32	1.88
10366766--10366790	13	1.9	13	100	0	50	60	16	0	24	1.36
10369694--10369726	6	5.5	6	96	0	57	81	0	3	15	0.80
10377361--10377398	16	2.3	17	81	9	51	21	21	15	42	1.89
10385675--10385704	15	1.9	16	93	6	53	26	13	6	53	1.64
10393000--10393057	30	1.9	30	85	0	80	31	20	6	41	1.79
10393932--10393979	25	1.9	25	91	0	78	37	18	22	20	1.94
10399826--10399873	20	2.5	20	86	3	62	64	2	6	27	1.28
10401505--10401582	5	15.2	5	84	14	90	76	0	2	20	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10401508--10401571	22	3.0	22	77	20	73	78	0	1	20	0.84
10401507--10401584	33	2.3	32	89	6	111	76	0	2	20	0.90
10401505--10401582	27	2.9	26	84	7	102	76	0	2	20	0.90
10404577--10404650	38	1.9	38	97	0	139	54	9	8	28	1.61
10404582--10404651	20	3.6	19	71	28	67	54	7	8	30	1.58
10407311--10407364	25	2.2	25	96	0	99	33	12	3	50	1.59
10410600--10410652	26	2.0	26	92	0	88	64	3	7	24	1.37
10410954--10410988	6	5.8	6	93	0	61	71	14	0	14	1.15
10411918--10411943	12	2.2	12	100	0	52	42	19	7	30	1.79
10427682--10427720	17	2.2	18	90	4	62	25	5	0	69	1.09
10430810--10430848	18	2.2	18	85	0	51	58	2	2	35	1.25
10430807--10430848	16	2.6	17	77	11	52	59	2	4	33	1.31
10434522--10434566	10	3.6	13	74	20	51	17	0	2	80	0.82
10445530--10445621	34	2.7	34	96	0	166	23	19	27	29	1.98
10453312--10453380	33	2.1	33	89	5	104	43	36	5	14	1.70
10460259--10460296	18	2.0	20	90	10	62	57	0	5	36	1.21
10464635--10464768	46	3.0	45	83	4	162	35	13	23	27	1.93
10467476--10467535	30	2.0	30	86	0	84	28	1	11	58	1.43
10467915--10467957	11	3.9	11	78	9	52	65	4	0	30	1.13
10469678--10469711	16	2.1	17	88	5	52	44	0	0	55	0.99
10469907--10469979	28	2.5	29	78	14	71	50	2	1	45	1.24
10475288--10475328	19	2.2	19	100	0	82	19	14	26	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10477884--10477934	19	2.6	19	84	6	57	66	0	1	31	1.03
10478183--10478219	14	2.8	14	80	12	51	64	0	0	35	0.94
10483328--10483387	16	3.8	16	73	13	61	40	3	3	53	1.34
10495107--10495162	15	3.8	14	83	4	58	12	14	14	58	1.63
10497401--10497522	60	2.0	60	93	0	208	23	18	28	29	1.97
10500548--10500614	30	2.3	29	78	12	75	8	11	17	61	1.56
10500568--10500617	15	3.4	14	81	8	55	8	14	14	64	1.50
10504016--10504041	11	2.4	11	100	0	52	50	7	19	23	1.73
10509567--10509595	10	2.9	10	100	0	58	72	0	0	27	0.85
10509523--10509609	12	6.8	12	68	19	52	74	0	5	19	1.01
10521844--10521897	27	2.0	27	88	0	81	40	7	12	38	1.72
10526574--10526798	40	5.6	40	86	6	303	23	21	28	27	1.99
10526574--10526798	83	2.8	80	89	5	312	23	21	28	27	1.99
10532655--10532742	46	1.9	45	88	6	133	23	9	6	60	1.51
10538252--10538425	48	3.6	48	82	3	206	25	25	20	28	1.99
10542506--10542543	16	2.5	15	87	8	51	52	0	7	39	1.31
10543453--10543604	43	3.6	42	75	12	141	25	17	25	30	1.97
10543453--10543573	41	2.9	42	78	8	131	25	17	24	32	1.97
10543453--10543591	42	3.3	42	77	8	129	25	18	24	30	1.98
10543760--10543797	18	2.1	19	90	5	60	50	0	15	34	1.45
10549234--10549407	48	3.6	48	84	3	224	24	22	21	32	1.98
10549247--10549441	96	2.0	95	80	5	214	26	22	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10555318--10555354	18	2.1	18	89	0	56	56	2	2	37	1.28
10556515--10556556	20	2.0	21	90	4	68	21	7	0	71	1.09
10557168--10557231	29	2.2	29	88	0	92	39	0	1	59	1.07
10557860--10557933	29	2.5	30	82	6	80	51	0	1	47	1.09
10562138--10562184	7	6.7	7	85	0	67	17	0	51	31	1.46
10562134--10562201	14	4.8	14	77	10	75	20	0	44	35	1.52
10562138--10562201	21	3.0	21	84	6	76	18	0	46	34	1.49
10563379--10563535	41	3.9	41	83	4	201	33	21	22	23	1.98
10563329--10563508	81	2.2	82	78	5	186	36	17	21	24	1.94
10563575--10563636	28	2.2	29	85	2	81	46	27	0	25	1.53
10563603--10564157	278	2.0	278	98	0	1065	37	10	14	37	1.82
10564606--10564676	21	3.4	20	76	7	61	12	0	40	46	1.42
10564606--10564677	14	5.1	14	80	6	65	12	0	41	45	1.42
10564616--10564682	21	3.2	21	82	0	80	8	0	46	44	1.35
10564616--10564682	7	9.6	7	83	0	71	8	0	46	44	1.35
10564616--10564679	14	4.6	14	84	0	83	9	0	46	43	1.35
10564657--10564690	14	2.4	14	90	0	50	5	0	52	41	1.25
10564985--10565094	7	15.4	7	67	14	55	21	0	29	48	1.57
10564985--10565100	14	8.1	14	68	12	65	21	0	30	47	1.57
10565048--10565100	22	2.4	23	82	17	69	18	0	33	47	1.49
10565555--10566078	114	4.7	113	81	8	481	25	14	22	37	1.93
10565491--10565997	230	2.2	228	79	6	526	26	14	22	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10565674--10566088	116	3.7	107	77	11	342	25	15	22	36	1.94
10566156--10566277	59	2.0	60	84	4	158	20	37	4	37	1.72
10569191--10569397	85	2.4	85	100	0	414	33	6	6	52	1.54
10569467--10569540	21	3.2	24	66	23	59	39	14	6	39	1.73
10569638--10569663	9	2.9	9	100	0	52	53	23	0	23	1.46
10569669--10569754	13	6.3	13	73	17	68	52	12	0	34	1.40
10569623--10569754	65	2.0	69	83	8	175	51	13	0	34	1.41
10569647--10569795	56	2.6	56	86	7	221	49	16	0	33	1.46
10569682--10569853	43	3.7	43	68	22	130	48	18	0	33	1.48
10569738--10569865	44	3.0	43	88	6	204	46	20	0	33	1.51
10569823--10569897	36	2.1	36	87	0	105	45	20	2	32	1.65
10574923--10574951	14	2.1	14	93	6	51	34	0	10	55	1.34
10575361--10575405	21	2.1	21	84	8	56	31	20	46	2	1.62
10575787--10575909	43	2.9	43	84	4	144	26	29	17	26	1.98
10579020--10579051	13	2.4	14	94	5	57	65	0	9	25	1.22
10579481--10579537	28	2.0	28	100	0	114	52	7	10	29	1.62
10580959--10580993	18	1.9	18	94	0	61	40	0	0	60	0.97
10581179--10581238	29	2.1	29	81	6	68	38	3	13	45	1.60
10583923--10583955	16	2.1	16	88	11	50	36	0	3	60	1.12
10583912--10583974	18	3.4	18	73	18	67	34	0	1	63	1.04
10584722--10584747	13	2.0	13	100	0	52	46	23	7	23	1.78
10586879--10587211	171	1.9	171	88	1	506	25	12	23	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10587658--10587709	21	2.5	21	100	0	104	19	7	17	55	1.65
10588791--10588846	24	2.3	25	75	9	62	28	1	1	67	1.10
10588820--10588856	10	3.7	10	88	0	56	32	0	2	64	1.07
10588820--10588867	20	2.4	20	85	0	60	35	2	4	58	1.29
10610432--10610480	21	2.4	21	82	3	55	36	12	12	38	1.80
10619634--10619686	26	2.0	26	100	0	106	26	15	11	47	1.79
10641131--10641186	19	3.0	19	78	17	64	57	3	0	39	1.16
10642120--10642148	11	2.5	12	94	5	51	37	3	0	58	1.15
10645713--10645786	31	2.3	32	93	2	123	21	25	36	16	1.94
10646636--10646661	13	2.0	13	100	0	52	38	7	15	38	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172