genome.fa.s10.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  126  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42133047--42133122	38	2.0	38	92	0	125	30	21	27	21	1.98
42133085--42133408	78	4.4	72	81	8	366	30	14	21	33	1.94
42133085--42133408	72	4.4	71	81	10	373	30	14	21	33	1.94
42133085--42133433	149	2.4	145	83	9	445	29	14	21	34	1.93
42133435--42134042	76	7.9	74	76	11	487	29	15	21	34	1.94
42133237--42133614	206	1.8	202	85	8	521	29	14	21	34	1.93
42133436--42134121	162	4.4	148	86	6	550	28	15	21	33	1.94
42133436--42134200	89	9.6	76	76	11	557	28	15	21	33	1.94
42133436--42134034	227	2.6	225	81	8	621	29	15	21	33	1.94
42133863--42133897	14	2.5	14	95	0	61	17	14	8	60	1.58
42133713--42134110	162	2.4	162	97	1	751	26	16	22	34	1.95
42134025--42134059	14	2.5	14	95	0	61	17	14	8	60	1.58
42134256--42134416	72	2.2	71	88	2	232	29	15	18	36	1.91
42134431--42134555	61	2.0	62	90	1	198	20	15	24	39	1.91
42134538--42134572	14	2.5	14	95	0	61	17	14	8	60	1.58
42134494--42134893	162	2.5	162	93	0	656	24	16	22	37	1.94
42134700--42134734	14	2.5	14	95	0	61	17	14	8	60	1.58
42133083--42134893	837	2.2	811	84	8	2344	27	15	21	35	1.94
42134859--42134900	14	2.9	15	85	7	59	14	14	7	64	1.48
42134862--42134911	14	3.6	14	81	7	57	20	12	4	64	1.43
42136621--42136673	21	2.5	22	82	11	67	67	3	3	24	1.23
42136628--42136691	18	3.6	18	79	6	60	64	4	7	23	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42139867--42139918	27	1.9	27	84	0	68	44	5	3	46	1.45
42140622--42140651	14	2.1	15	93	6	53	23	0	6	70	1.11
42148210--42148256	24	2.0	24	100	0	94	42	17	21	19	1.89
42150208--42150251	22	2.0	22	86	0	61	52	0	0	47	1.00
42150271--42150311	13	2.9	14	77	22	50	53	0	0	46	1.00
42150353--42150393	21	1.9	22	85	5	57	53	0	0	46	1.00
42150828--42150878	20	2.6	21	78	12	63	50	5	0	43	1.26
42150857--42150894	14	2.7	14	88	8	51	39	5	2	52	1.38
42164500--42164631	67	2.0	67	92	2	223	29	6	15	48	1.70
42165007--42165188	46	4.0	46	88	1	231	40	14	24	21	1.90
42165449--42165495	25	2.0	25	83	8	62	53	4	14	27	1.60
42170107--42170237	69	1.9	69	88	0	199	32	13	26	26	1.94
42175261--42175301	21	2.0	21	90	0	64	19	29	21	29	1.98
42181237--42181296	30	2.0	30	90	0	93	30	25	8	36	1.85
42184680--42184729	26	1.9	26	95	0	91	30	18	16	36	1.92
42187403--42187455	26	2.0	26	100	0	106	50	7	0	41	1.30
42191630--42191690	32	1.9	32	100	0	122	37	21	6	34	1.79
42194657--42194785	42	3.1	42	85	0	150	37	17	18	27	1.93
42196090--42196249	41	3.9	41	84	1	178	21	21	22	34	1.97
42196072--42196246	82	2.2	80	79	6	199	20	21	24	34	1.97
42197739--42197856	42	2.8	42	75	10	116	42	15	16	26	1.87
42198894--42198944	18	2.8	18	87	0	75	47	0	1	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42198886--42198944	18	3.0	20	76	14	61	47	0	1	50	1.11
42213027--42213093	18	3.6	18	75	17	57	28	2	1	67	1.14
42220989--42221050	31	2.0	31	96	0	115	30	22	11	35	1.89
42229312--42229507	38	5.2	38	86	0	275	44	27	14	13	1.83
42230442--42230486	24	1.9	23	81	4	54	33	17	0	48	1.48
42236070--42236129	10	6.6	9	74	14	52	30	1	5	63	1.25
42236081--42236136	18	3.1	18	76	5	60	35	1	1	60	1.17
42239282--42239365	26	3.2	26	96	0	150	34	4	23	36	1.76
42241697--42241736	19	2.2	19	90	4	64	57	7	0	35	1.27
42242162--42242309	74	2.0	74	100	0	296	28	22	16	32	1.96
42245679--42245734	23	2.5	23	82	5	62	26	1	0	71	0.96
42246138--42246195	30	1.9	30	82	6	73	55	10	12	22	1.66
42257425--42257464	18	2.2	18	86	8	55	30	0	7	62	1.23
42257423--42257512	46	2.0	45	85	10	121	30	2	8	58	1.40
42257417--42257491	13	5.8	12	75	16	53	29	1	8	61	1.33
42257585--42257637	22	2.3	24	81	18	69	35	1	3	58	1.27
42257764--42257829	22	3.0	22	77	18	66	33	0	7	59	1.26
42257776--42257877	23	4.2	23	71	21	68	30	6	6	55	1.52
42258426--42259189	133	5.8	128	73	8	475	36	17	17	29	1.93
42258684--42259151	133	3.5	134	75	7	506	36	17	17	28	1.93
42258644--42259189	264	2.1	264	100	0	1092	36	16	16	30	1.92
42261745--42262517	44	17.2	44	80	7	811	25	31	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42261745--42262517	132	5.7	132	84	6	985	25	31	15	28	1.95
42262224--42262341	61	1.9	61	92	0	200	30	29	14	25	1.95
42262184--42262385	105	1.9	105	87	2	298	26	29	15	28	1.96
42262140--42262429	149	1.9	149	89	1	447	26	30	15	28	1.96
42262092--42262473	193	2.0	193	89	2	579	26	30	15	28	1.96
42262052--42262516	237	2.0	236	87	2	673	26	30	14	28	1.95
42262697--42263062	128	2.8	128	92	3	574	28	26	18	27	1.98
42263058--42263414	132	2.7	132	92	0	597	25	22	19	32	1.98
42262883--42263253	177	2.1	177	86	5	520	24	24	19	30	1.98
42262755--42263385	309	2.1	305	83	8	811	25	24	19	30	1.98
42263008--42263385	45	8.5	45	68	9	211	24	23	19	32	1.98
42265985--42266027	23	1.9	23	95	4	79	39	27	4	27	1.76
42267067--42267103	5	7.6	5	82	17	51	40	16	21	21	1.91
42267072--42267109	19	2.0	19	94	0	67	42	13	21	23	1.88
42267057--42267103	24	2.0	24	100	0	94	42	14	21	21	1.88
42267245--42267293	22	2.1	24	85	14	68	36	2	4	57	1.30
42267420--42267485	22	3.0	22	77	18	66	33	0	7	59	1.26
42267432--42267533	23	4.2	23	71	21	68	30	6	6	55	1.52
42268065--42268409	130	2.6	132	76	8	337	35	18	18	26	1.95
42282857--42282883	11	2.5	11	100	0	54	62	18	18	0	1.32
42284058--42284217	44	3.6	44	90	2	241	46	15	23	14	1.82
42285009--42285226	75	2.9	75	86	2	285	30	14	21	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42285163--42285292	64	2.0	64	90	0	206	23	18	23	34	1.96
42285227--42285388	90	1.8	89	87	2	245	25	18	20	35	1.96
42285382--42285418	15	2.5	15	95	0	65	18	5	2	72	1.15
42285567--42285714	56	2.7	56	90	5	237	29	14	20	34	1.93
42285911--42285957	19	2.5	19	100	0	94	27	17	31	23	1.96
42287403--42287502	3	31.7	3	70	18	53	32	3	5	60	1.34
42287612--42287660	22	2.1	24	85	14	68	36	2	4	57	1.30
42287788--42287853	22	3.0	22	77	18	66	33	0	7	59	1.26
42287800--42287901	23	4.2	23	71	21	68	30	6	6	55	1.52
42287895--42287959	34	1.9	34	84	6	87	38	6	1	53	1.35
42298581--42298618	20	1.9	20	88	0	58	36	15	10	36	1.82
42307264--42307288	4	6.2	4	100	0	50	24	0	0	76	0.80
42315374--42315523	75	2.0	75	97	0	282	47	8	18	26	1.76
42315938--42315992	18	3.1	17	82	10	65	56	0	0	43	0.99
42315938--42315992	17	3.1	18	82	12	69	56	0	0	43	0.99
42323326--42323363	18	2.1	19	90	5	60	34	5	0	60	1.19
42323326--42323370	19	2.3	19	85	11	56	33	6	0	60	1.23
42326087--42326131	19	2.3	19	80	7	54	24	4	2	68	1.19
42331890--42331963	15	4.6	16	70	18	55	63	0	0	36	0.95
42331891--42331949	32	1.9	30	86	6	82	61	0	0	38	0.96
42331907--42331966	22	2.7	22	82	12	61	60	0	0	40	0.97
42334530--42334566	8	4.5	8	96	3	65	10	10	2	75	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42334531--42334575	16	2.9	15	84	12	56	13	8	2	75	1.13
42334540--42334600	23	2.6	22	84	7	68	13	8	4	73	1.22
42334634--42334695	26	2.7	23	80	14	65	41	0	1	56	1.09
42334722--42334789	31	2.3	31	80	12	81	30	4	4	60	1.36
42334887--42334982	30	3.0	32	76	10	81	59	0	2	38	1.09
42334928--42334983	26	2.1	28	86	6	80	62	0	0	37	0.95
42335354--42335402	21	2.4	21	81	15	59	61	0	0	38	0.96
42335462--42335511	22	2.3	23	80	13	61	62	2	0	36	1.07
42335460--42335519	21	2.9	20	79	13	68	60	1	0	38	1.07
42335484--42335526	11	4.0	11	79	14	54	60	2	0	37	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172