genome.fa.s10.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  35  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11012199--11012246	16	2.9	16	77	17	53	41	2	0	56	1.11
11012204--11012251	18	2.6	18	76	3	51	35	2	0	62	1.07
11012556--11012605	21	2.3	23	80	13	61	58	6	0	36	1.23
11012593--11012634	20	2.0	22	86	9	61	57	2	0	40	1.12
11012556--11012626	34	2.2	33	87	10	101	59	4	0	36	1.17
11012584--11012657	25	3.1	25	77	15	93	56	2	0	40	1.13
11012581--11012664	13	6.7	14	71	25	55	55	3	0	40	1.17
11012584--11012690	47	2.2	48	85	9	139	57	2	0	39	1.13
11012678--11012710	9	3.7	9	92	8	50	78	0	0	21	0.75
11012588--11012699	48	2.3	47	82	8	120	59	2	0	37	1.11
11012681--11012710	14	2.1	14	100	0	60	80	0	0	20	0.72
11016458--11016610	78	2.0	78	96	0	279	34	14	18	32	1.91
11020251--11020289	14	2.9	14	88	3	53	64	0	0	35	0.94
11027286--11027381	50	1.9	50	97	0	183	46	6	25	21	1.74
11027525--11027560	17	2.2	16	90	5	54	33	33	0	33	1.58
11031505--11031607	49	2.1	50	96	1	190	46	5	4	42	1.49
11032282--11032314	16	2.1	16	100	0	66	18	6	18	57	1.60
11033227--11033268	19	2.3	18	84	12	50	61	0	2	35	1.09
11035163--11035211	19	2.6	19	100	0	98	30	12	14	42	1.82
11042499--11043052	279	2.0	279	98	0	1072	31	20	19	28	1.97
11044732--11044775	23	2.0	22	82	8	54	31	20	11	36	1.88
11045604--11045638	16	2.1	16	89	5	52	62	2	0	34	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11045969--11046041	28	2.6	29	86	4	96	45	13	5	35	1.67
11046201--11046245	18	2.3	21	81	11	60	15	15	17	51	1.77
11046448--11046510	29	2.2	28	83	8	74	36	3	0	60	1.13
11046458--11046529	30	2.4	30	88	9	103	38	2	0	58	1.13
11046629--11046685	21	2.5	23	83	16	82	71	10	1	15	1.21
11046641--11046684	21	2.1	21	100	0	88	72	13	0	13	1.12
11047199--11047226	13	2.2	13	100	0	56	28	0	25	46	1.53
11052096--11052137	9	4.7	9	87	0	57	26	4	16	52	1.63
11058229--11058269	7	5.9	7	97	0	73	68	2	0	29	1.03
11058498--11058597	33	3.0	32	83	11	105	66	4	1	29	1.17
11058718--11058782	30	2.1	32	88	5	98	47	0	0	52	1.00
11058721--11058793	30	2.4	30	82	8	87	50	1	0	47	1.09
11058795--11058831	18	2.1	18	89	0	56	29	0	0	70	0.88
11059735--11059811	29	2.7	29	76	11	79	44	3	1	50	1.28
11062604--11062640	16	2.2	17	90	4	58	40	0	5	54	1.24
11065816--11065848	17	1.9	17	100	0	66	39	6	6	48	1.53
11066521--11066550	11	2.7	11	100	0	60	60	0	0	40	0.97
11066985--11067014	14	2.1	14	93	0	51	30	0	0	70	0.88
11084735--11084805	35	2.0	35	94	0	124	9	21	18	50	1.75
11093713--11093794	25	3.3	24	79	5	74	25	20	21	31	1.98
11093725--11093806	25	3.3	25	79	3	85	25	23	19	31	1.98
11100885--11100941	26	2.2	26	83	3	69	28	19	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11105318--11105361	22	2.0	22	90	0	70	18	18	6	56	1.62
11107358--11107401	20	2.2	20	91	0	70	11	20	22	45	1.83
11111052--11111256	44	4.7	43	81	11	215	32	27	18	22	1.97
11112206--11112261	2	28.5	2	94	3	96	0	46	0	53	1.00
11112957--11112987	9	3.3	9	95	4	53	80	0	0	19	0.71
11112956--11112999	5	8.6	5	92	7	63	77	0	4	18	0.94
11118032--11118109	12	6.4	11	73	16	57	79	5	3	11	1.02
11118075--11118113	13	3.1	13	88	7	62	84	2	0	12	0.72
11118075--11118113	20	2.0	20	90	10	62	84	2	0	12	0.72
11128952--11128986	11	3.3	11	92	4	54	74	0	0	25	0.82
11128963--11129053	29	3.2	28	75	14	73	58	3	1	37	1.22
11129742--11129802	19	3.2	18	78	19	54	32	1	9	55	1.42
11129733--11129803	20	3.7	18	78	16	72	32	1	11	54	1.44
11130872--11130932	28	2.1	30	85	11	83	34	0	1	63	1.04
11130874--11130948	40	1.9	37	84	7	96	37	0	1	61	1.05
11132108--11132221	56	2.0	56	96	0	210	30	7	10	51	1.63
11134399--11134444	8	5.6	8	87	5	56	0	19	0	80	0.71
11134404--11134441	4	9.2	4	88	5	58	0	21	0	78	0.74
11135015--11135069	23	2.4	24	85	11	71	67	23	5	3	1.28
11136882--11136948	14	4.7	14	88	3	71	38	7	16	37	1.77
11136889--11136948	14	4.2	14	89	4	84	36	8	16	38	1.79
11141418--11141457	18	2.2	18	91	8	64	50	5	10	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11141539--11141605	19	3.5	19	93	2	107	56	5	1	35	1.33
11142453--11142499	21	2.3	20	78	10	51	25	12	14	46	1.80
11147425--11147570	51	2.9	50	79	7	170	28	26	19	25	1.98
11148037--11148204	84	2.0	84	97	0	318	27	23	7	41	1.80
11149056--11149096	20	2.0	21	86	13	59	29	0	2	68	1.03
11149065--11149102	16	2.4	16	86	4	51	23	0	0	76	0.79
11155476--11155562	21	4.0	23	79	10	83	16	21	24	37	1.93
11157254--11157288	15	2.3	15	100	0	70	57	8	0	34	1.29
11166217--11166249	17	2.0	17	94	5	59	36	15	0	48	1.45
11170169--11170301	46	2.9	47	80	4	155	19	21	15	43	1.88
11172562--11172711	46	3.3	46	98	0	282	22	24	12	41	1.87
11176359--11176384	12	2.2	12	100	0	52	23	15	7	53	1.67
11180949--11181038	37	2.4	37	88	0	126	28	17	23	30	1.97
11180991--11181093	51	2.0	51	98	0	197	31	13	24	31	1.94
11190273--11190315	22	2.0	22	86	4	61	30	0	4	65	1.13
11192099--11192182	43	2.0	43	85	4	116	29	25	11	33	1.91
11191830--11192229	177	2.3	177	84	1	507	29	24	16	30	1.97
11192097--11192490	147	2.8	141	86	6	541	27	23	16	32	1.96
11192243--11192454	44	4.7	44	67	17	139	25	26	16	32	1.96
11194506--11194565	30	2.0	30	90	0	93	28	25	8	38	1.84
11199668--11199835	45	3.7	45	81	0	165	26	17	13	43	1.85
11202933--11202966	15	2.3	15	89	0	50	17	11	17	52	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11206710--11206810	45	2.2	45	83	0	121	33	14	9	41	1.79
11206783--11206841	31	1.9	31	89	0	91	30	16	15	37	1.90
11206738--11206886	76	2.0	76	83	2	192	29	16	12	40	1.86
11209585--11209637	27	2.0	27	100	0	106	41	7	15	35	1.75
11209782--11209824	21	2.1	20	82	4	50	39	9	16	34	1.80
11215929--11216007	39	2.0	39	97	0	149	44	24	12	18	1.85
11219987--11220052	15	4.2	15	72	5	51	57	0	39	3	1.14
11221317--11221366	21	2.4	21	82	0	64	10	18	40	32	1.83
11238726--11239077	175	2.0	175	100	0	704	34	18	19	27	1.95
11243376--11243410	17	2.1	17	88	0	52	37	0	8	54	1.31
11246512--11246611	40	2.5	40	91	0	164	47	24	8	21	1.77
11246651--11246690	17	2.3	18	95	4	73	50	10	22	17	1.76
11248278--11248306	15	1.9	15	100	0	58	41	37	6	13	1.72
11248614--11248819	64	3.2	64	95	0	367	47	15	13	24	1.81
11248697--11248799	34	3.1	34	62	25	85	43	16	13	26	1.85
11248930--11249004	18	4.1	18	72	5	62	53	13	9	24	1.68
11248930--11249006	12	6.4	12	69	11	50	51	14	9	24	1.70
11249020--11249065	24	1.9	24	90	0	74	63	8	4	23	1.42
11249031--11249076	18	2.6	18	82	6	58	65	6	6	21	1.39
11249017--11249072	12	4.7	12	73	8	51	60	8	3	26	1.43
11249019--11249072	24	2.3	23	84	9	72	62	7	3	25	1.38
11254315--11254351	17	2.2	17	100	0	74	45	16	32	5	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11255429--11255462	16	2.1	16	88	0	50	50	14	17	17	1.79
11258261--11258301	21	2.0	21	90	0	64	29	21	29	19	1.98
11260207--11260240	16	2.1	16	88	0	50	50	14	17	17	1.79
11263545--11263608	3	22.3	3	81	15	82	34	0	1	64	1.03
11263865--11263892	3	9.3	3	100	0	56	35	0	0	64	0.94
11263989--11264018	15	1.9	16	93	6	53	70	0	30	0	0.88
11264390--11264425	18	2.1	18	89	5	56	41	0	25	33	1.55
11266179--11266228	10	5.0	10	86	13	68	70	2	8	20	1.23
11266876--11267062	96	1.9	97	88	3	279	32	26	12	28	1.93
11267788--11267840	5	11.0	5	74	22	51	75	1	1	20	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172