genome.fa.s10.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  171  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56062387--56062570	62	3.0	62	95	0	323	33	4	20	41	1.74
56062688--56063219	266	2.0	266	98	0	1028	22	25	18	32	1.97
56064764--56064797	15	2.3	15	94	0	59	58	11	14	14	1.63
56065809--56065844	10	3.5	10	96	3	63	91	8	0	0	0.41
56065802--56065844	11	3.9	11	90	9	70	88	11	0	0	0.52
56071250--56071390	70	2.0	70	100	0	282	32	9	14	43	1.78
56077326--56077377	27	1.9	27	92	0	86	38	9	26	25	1.86
56088661--56088772	43	2.6	43	88	0	161	30	21	17	30	1.96
56092921--56093046	9	14.0	9	76	11	107	34	0	19	46	1.50
56092967--56093061	47	2.0	48	93	2	165	37	0	17	44	1.50
56092923--56093038	61	2.0	59	88	8	175	33	0	19	46	1.51
56096005--56096124	43	2.8	43	90	0	186	28	30	18	22	1.97
56096741--56097395	23	28.6	22	75	10	323	40	22	6	30	1.79
56096833--56097404	160	3.6	160	94	0	1004	40	22	6	30	1.79
56096739--56097205	137	3.4	137	81	5	457	40	22	6	30	1.78
56096861--56097029	91	1.9	91	82	2	214	40	21	6	31	1.79
56096741--56097362	137	4.5	137	77	8	456	40	22	6	30	1.79
56096741--56097395	46	14.3	46	75	9	445	40	22	6	30	1.79
56105669--56105758	44	2.0	44	82	4	110	32	18	22	26	1.97
56105687--56106009	148	2.2	148	87	1	452	30	19	19	30	1.96
56107692--56107738	18	2.6	18	86	0	67	25	6	6	61	1.44
56107768--56107814	23	2.1	22	88	7	69	36	8	2	53	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56108324--56108750	110	3.9	111	88	3	587	29	16	18	34	1.93
56113687--56113934	112	2.2	112	80	4	268	31	20	22	25	1.98
56113178--56114422	510	2.4	510	93	1	2082	31	20	22	25	1.98
56114171--56114423	115	2.2	114	83	4	330	31	18	23	26	1.97
56115331--56115365	14	2.4	15	90	4	54	20	0	37	42	1.52
56118507--56118637	25	5.4	24	74	18	73	47	19	2	31	1.62
56118480--56118630	9	18.1	9	84	11	118	44	19	3	31	1.69
56118507--56118637	32	4.0	32	79	11	135	47	19	2	31	1.62
56118489--56118627	41	3.4	41	87	5	210	44	20	3	31	1.68
56118489--56118637	82	1.8	80	92	2	253	45	19	3	31	1.67
56120335--56122014	835	2.0	836	96	0	3121	30	17	19	32	1.95
56123527--56123578	21	2.5	20	81	9	59	34	13	44	7	1.72
56123957--56124122	43	3.9	43	74	2	156	33	20	19	26	1.97
56124605--56124643	17	2.4	17	86	4	53	53	0	2	43	1.14
56125284--56125346	28	2.2	28	94	0	108	61	9	15	12	1.55
56129408--56129697	40	7.3	40	93	1	422	24	21	27	26	1.99
56129355--56129697	80	4.3	80	88	2	424	25	20	27	26	1.99
56129355--56129699	120	2.9	118	86	3	424	24	20	27	26	1.99
56138160--56138383	40	5.6	40	91	1	308	24	20	28	26	1.99
56138121--56138383	80	3.3	80	85	3	318	23	20	28	26	1.99
56138121--56138383	120	2.2	120	82	4	318	23	20	28	26	1.99
56139850--56139889	20	2.0	20	100	0	80	40	10	15	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56149168--56149248	36	2.3	36	78	2	83	39	25	8	25	1.84
56151754--56151787	17	2.0	17	94	0	59	35	26	11	26	1.91
56152439--56152477	16	2.4	17	82	4	53	28	2	0	69	1.02
56154130--56154202	24	3.2	22	68	16	60	36	9	5	47	1.59
56154114--56154204	44	2.1	44	93	0	155	38	7	4	49	1.52
56154141--56154204	20	3.0	21	70	17	67	39	10	1	48	1.48
56155090--56155133	22	2.0	23	90	4	72	11	11	13	63	1.52
56160312--56160565	128	2.0	128	90	0	400	32	18	19	29	1.95
56170806--56170896	44	2.1	44	91	0	146	26	12	14	47	1.79
56177581--56177666	44	2.0	43	88	2	127	30	10	11	47	1.73
56178294--56178387	21	4.7	19	92	5	134	36	9	14	39	1.79
56178295--56178378	21	4.1	21	95	3	145	36	9	14	39	1.78
56178294--56178387	40	2.4	38	86	10	134	36	9	14	39	1.79
56178587--56178625	19	2.0	21	85	10	55	15	10	5	69	1.34
56184055--56184094	21	1.9	21	85	10	55	72	0	25	2	0.97
56185355--56185767	132	3.1	132	91	0	646	30	20	23	24	1.98
56185750--56186831	44	24.9	42	69	14	345	30	20	22	27	1.98
56185969--56186825	173	4.9	176	77	8	734	30	19	22	27	1.98
56185731--56186340	217	2.8	217	84	5	804	29	20	22	27	1.98
56185757--56186432	217	3.1	214	78	10	680	29	19	22	28	1.98
56186055--56186694	350	1.8	350	83	2	856	30	19	22	27	1.98
56186494--56186776	129	2.2	129	100	0	566	30	20	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56186494--56186841	129	2.7	129	90	2	412	32	20	20	26	1.97
56187176--56187229	19	2.8	19	91	0	90	35	9	18	37	1.83
56187208--56187252	23	2.0	23	91	4	74	37	4	17	40	1.70
56188047--56188088	19	2.2	20	82	4	50	30	7	11	50	1.66
56189472--56189565	31	3.2	29	77	19	88	36	12	10	40	1.78
56190141--56190192	26	1.9	28	84	7	72	3	13	11	71	1.28
56190191--56190215	11	2.3	11	100	0	50	16	24	8	52	1.70
56196881--56196963	42	2.0	42	95	0	148	33	7	16	42	1.76
56199605--56199652	22	2.2	22	81	7	53	14	10	12	62	1.54
56202352--56202376	5	5.0	5	100	0	50	40	20	0	40	1.52
56203273--56203305	16	2.0	17	88	5	50	48	0	3	48	1.17
56203435--56203465	12	2.6	12	94	0	53	54	0	0	45	0.99
56207893--56207951	22	2.7	21	74	7	64	54	0	5	40	1.23
56209750--56209781	5	6.4	5	100	0	64	37	0	62	0	0.95
56214933--56215013	24	3.3	24	78	1	90	20	24	22	32	1.98
56214980--56215069	25	3.6	25	77	3	92	20	25	21	33	1.97
56215641--56215667	6	4.5	6	100	0	54	33	0	14	51	1.43
56223125--56223156	16	2.0	16	100	0	64	25	6	18	50	1.70
56228772--56228829	3	19.3	3	96	0	107	34	31	0	34	1.58
56229880--56229910	16	1.9	16	100	0	62	77	0	0	22	0.77
56237300--56237325	2	13.0	2	100	0	52	50	0	0	50	1.00
56237745--56237801	19	3.1	19	73	14	57	73	1	3	21	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56238264--56238301	8	4.8	8	81	12	51	84	0	0	15	0.63
56261910--56262152	41	6.0	41	85	2	301	20	20	22	36	1.95
56265012--56265050	3	13.3	3	86	5	53	0	25	0	74	0.82
56270268--56270325	20	2.9	20	94	0	98	48	0	27	24	1.51
56284485--56285156	341	2.0	335	80	5	755	34	13	16	35	1.88
56286624--56286717	27	3.5	27	80	8	102	43	21	6	28	1.77
56286722--56287647	27	34.3	27	99	0	1798	30	25	7	37	1.83
56287635--56287729	27	3.5	27	77	5	93	43	22	5	29	1.75
56287726--56287882	27	5.9	27	87	1	199	33	19	21	26	1.97
56287721--56287883	53	3.0	54	83	2	211	34	18	20	25	1.96
56287721--56287883	80	2.0	82	89	2	249	34	18	20	25	1.96
56288285--56288371	6	14.3	6	79	11	88	19	13	14	51	1.76
56299429--56299594	85	2.0	85	91	0	269	30	6	24	38	1.81
56300341--56300464	25	5.0	25	79	9	110	27	13	22	36	1.92
56311365--56311411	21	2.2	21	100	0	94	14	29	0	55	1.40
56315672--56315803	49	2.7	49	86	8	162	21	28	22	27	1.99
56315722--56315894	93	1.9	91	81	10	208	24	30	19	25	1.98
56315823--56316126	46	6.5	48	76	8	223	22	24	19	32	1.97
56315680--56316128	94	4.7	94	77	5	309	23	26	20	30	1.98
56315915--56316139	46	4.8	47	79	4	231	23	22	19	34	1.96
56325865--56325946	42	2.0	42	92	4	139	30	37	15	15	1.90
56342427--56342529	52	2.0	52	98	0	197	37	12	16	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56342428--56342511	27	3.2	27	63	24	70	38	14	16	30	1.89
56343969--56344047	37	2.1	37	90	0	122	25	31	18	24	1.98
56347442--56347493	25	2.1	25	82	7	61	30	30	7	30	1.85
56347671--56347891	40	5.5	40	82	4	259	25	27	23	23	2.00
56347675--56347891	120	1.8	120	83	6	287	26	26	23	23	2.00
56348197--56348275	29	2.7	29	86	5	106	27	32	15	24	1.95
56348257--56348359	43	2.4	43	98	0	197	25	36	15	22	1.93
56353156--56353181	13	2.0	13	100	0	52	15	7	38	38	1.76
56363009--56363072	28	2.2	28	97	2	119	39	10	12	37	1.78
56364486--56364861	66	5.7	66	70	2	207	13	26	18	41	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172