genome.fa.s10.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  167  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54683851--54684373	72	7.2	72	96	0	949	33	16	17	33	1.92
54686574--54686618	15	2.8	15	80	12	54	0	6	6	86	0.70
54686577--54686618	11	3.8	11	84	6	50	0	7	7	85	0.73
54686574--54686618	16	2.8	16	83	16	65	0	6	6	86	0.70
54686546--54686618	28	2.7	28	81	10	80	2	8	6	82	0.94
54691415--54691544	15	8.5	15	80	13	149	16	8	18	56	1.65
54691390--54691484	44	2.1	44	83	7	120	12	9	20	57	1.62
54691414--54691548	31	4.4	30	83	9	173	16	8	18	56	1.65
54691414--54691549	48	2.9	45	80	14	141	16	8	18	56	1.65
54695586--54695939	130	2.7	131	82	4	421	34	16	18	30	1.93
54701961--54702196	126	1.9	126	88	1	357	30	22	15	30	1.95
54703453--54703484	15	2.1	15	94	0	55	50	0	28	21	1.49
54706987--54707027	21	2.0	21	85	0	55	19	26	21	31	1.97
54718238--54718298	32	1.9	31	83	9	79	54	1	4	39	1.32
54719841--54719895	21	2.6	21	80	5	58	32	9	10	47	1.70
54719947--54720011	26	2.6	25	70	18	62	56	1	1	40	1.18
54725355--54725414	20	3.0	20	78	11	68	20	18	3	58	1.53
54725874--54729140	798	4.1	798	99	0	6376	25	15	19	39	1.91
54732136--54732190	28	2.0	28	89	7	85	32	7	7	52	1.56
54737470--54737632	82	2.0	82	95	0	290	39	14	25	19	1.90
54744121--54748639	428	10.6	429	93	1	7197	33	8	13	44	1.74
54744121--54748639	859	5.3	856	93	1	7214	33	8	13	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54754469--54754508	19	2.1	19	100	0	80	45	15	20	20	1.86
54757419--54757448	15	1.9	16	93	6	53	36	13	0	50	1.42
54758372--54758553	49	3.7	49	78	5	213	29	26	18	26	1.98
54758364--54758551	100	1.9	100	90	0	304	29	25	19	26	1.98
54764636--54764758	18	6.8	18	82	7	151	32	24	11	31	1.91
54764630--54764758	36	3.6	36	93	0	222	32	24	11	31	1.91
54772623--54772679	25	2.3	25	100	0	114	26	19	19	35	1.95
54782196--54782242	24	2.0	24	87	8	69	55	2	2	40	1.24
54785629--54785739	36	3.1	36	96	0	195	24	8	29	37	1.84
54786424--54786498	36	2.1	36	97	0	141	25	13	25	36	1.92
54789899--54790007	52	2.1	52	98	0	209	36	16	18	28	1.92
54790889--54790957	35	2.0	35	97	0	129	63	11	14	10	1.51
54794892--54794930	17	2.2	19	90	9	64	64	5	5	25	1.35
54795645--54795682	10	3.8	10	83	13	51	65	2	7	23	1.32
54797320--54797368	25	2.0	25	92	8	82	73	0	2	24	0.94
54801061--54801110	10	5.0	10	81	13	59	68	2	8	22	1.26
54804063--54804396	167	2.0	167	98	0	641	26	20	23	29	1.98
54812133--54812222	39	2.3	39	86	0	126	42	12	25	20	1.86
54814270--54814368	19	5.2	19	73	14	62	61	2	8	28	1.35
54814282--54814368	19	4.5	19	72	14	63	62	1	6	29	1.29
54814573--54814723	10	16.4	9	70	19	73	30	3	1	63	1.24
54814572--54814617	24	1.9	24	90	0	74	28	2	2	67	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54814674--54814723	25	2.0	25	84	7	66	26	2	2	70	1.09
54817331--54817386	28	2.0	28	100	0	112	35	17	21	25	1.95
54826259--54826285	12	2.2	12	100	0	54	7	0	25	66	1.17
54834797--54834825	15	1.9	15	100	0	58	20	34	10	34	1.87
54835616--54835658	15	2.9	15	89	0	59	51	2	30	16	1.57
54841462--54841629	46	3.6	45	77	13	171	21	20	29	27	1.98
54841459--54841631	93	1.9	93	91	0	283	21	20	30	27	1.98
54845876--54845907	5	6.6	5	92	7	57	18	0	0	81	0.70
54845876--54845906	9	3.3	9	91	8	53	19	0	0	80	0.71
54851559--54851660	48	2.0	49	83	10	127	20	29	6	43	1.78
54852130--54852290	54	3.0	54	99	0	313	29	13	19	36	1.91
54855241--54855275	10	3.6	10	88	3	54	37	2	8	51	1.47
54857827--54857867	21	2.0	21	90	0	64	19	29	21	29	1.98
54862387--54862479	46	2.0	46	100	0	186	41	6	8	43	1.61
54863336--54863365	15	2.0	15	93	0	51	63	0	3	33	1.11
54865947--54865975	11	2.5	12	94	5	51	17	24	0	58	1.38
54879691--54879739	20	2.5	19	83	6	62	40	2	0	57	1.10
54886766--54886858	18	5.2	18	84	0	123	33	12	21	32	1.91
54891172--54891550	3	125.7	3	67	13	129	57	2	8	31	1.40
54891165--54891232	29	2.4	28	79	15	70	63	2	4	29	1.29
54892361--54892392	9	3.6	9	100	0	64	81	18	0	0	0.70
54894532--54894565	15	2.3	15	90	10	52	61	5	0	32	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54904386--54904472	44	2.0	43	93	2	147	49	14	6	28	1.70
54909122--54909208	44	2.0	43	90	2	138	49	16	6	27	1.71
54915012--54915041	15	2.0	15	93	0	51	50	6	23	20	1.71
54922128--54922764	189	3.4	189	90	1	965	32	18	18	30	1.95
54923237--54923271	3	11.7	3	93	0	61	34	0	31	34	1.58
54926235--54927347	555	2.0	555	98	0	2129	19	26	19	33	1.96
54935518--54935587	30	2.3	30	100	0	140	52	8	0	38	1.32
54936336--54936369	16	2.1	16	94	0	59	47	5	26	20	1.73
54940960--54941011	20	2.6	21	82	14	65	28	13	7	50	1.69
54942930--54943566	189	3.4	189	89	0	918	32	18	17	30	1.94
54946558--54946853	39	7.5	39	93	1	477	19	22	29	28	1.98
54949751--54949791	21	2.0	21	90	0	64	19	29	21	29	1.98
54949582--54949816	118	2.0	118	94	1	409	21	24	21	32	1.98
54954472--54954556	39	2.2	40	86	2	118	29	31	21	17	1.96
54954627--54954782	47	3.3	46	86	4	199	27	29	9	33	1.89
54963987--54964018	10	3.1	10	95	4	55	46	18	25	9	1.79
54968577--54968652	38	2.0	38	92	0	125	32	15	11	39	1.84
54968708--54968755	23	2.1	23	84	3	62	25	4	27	43	1.72
54970653--54970706	27	2.0	27	100	0	108	25	7	11	55	1.61
54970644--54970701	27	2.3	24	80	13	71	27	5	12	55	1.58
54978063--54978095	10	3.4	10	87	4	50	33	0	0	66	0.92
54985722--54985783	17	3.5	17	82	8	79	38	11	11	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54990683--54990862	92	2.0	92	96	0	333	31	21	17	29	1.96
54991640--54991722	11	7.5	11	75	12	71	81	0	15	2	0.78
54991643--54991722	17	4.8	16	79	15	81	81	0	16	2	0.80
54991640--54991716	24	3.2	24	84	15	90	81	0	15	2	0.79
54991642--54991722	23	3.6	23	80	14	89	81	0	16	2	0.80
54992620--54992762	43	3.3	43	71	14	132	33	22	19	24	1.97
54992609--54992817	87	2.5	85	85	7	291	32	23	21	22	1.98
54992945--54994069	207	5.4	207	93	0	1793	30	17	23	29	1.97
54994467--54994528	19	3.2	19	93	4	97	38	9	16	35	1.81
54996088--54996154	30	2.2	30	94	2	116	59	11	7	20	1.56
55001003--55001036	15	2.3	15	100	0	68	55	11	20	11	1.67
55001902--55001944	3	14.0	3	95	4	77	65	0	0	34	0.93
55018028--55018059	5	6.6	5	92	7	57	18	0	0	81	0.70
55018028--55018058	9	3.3	9	91	8	53	19	0	0	80	0.71
55020371--55020406	17	2.1	17	89	0	54	5	30	0	63	1.17
55023916--55024025	38	2.9	38	88	0	157	18	23	16	41	1.89
55025079--55025291	46	4.6	46	95	1	365	23	25	14	37	1.92
55035081--55035116	17	2.1	17	89	0	54	33	0	0	66	0.92
55035085--55035118	14	2.5	14	90	4	52	35	0	0	64	0.94
55052607--55052703	18	5.4	18	83	0	131	34	17	20	27	1.95
55052609--55052703	36	2.6	36	89	0	145	33	17	21	27	1.96
55056179--55056249	33	2.2	33	94	0	124	39	5	14	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55061137--55061180	21	2.1	21	91	0	70	29	20	29	20	1.98
55062602--55062635	16	2.1	16	88	0	50	50	14	17	17	1.79
55075625--55075687	31	2.0	31	100	0	126	38	3	33	25	1.72
55077231--55077261	11	2.8	11	95	0	53	19	48	3	29	1.64
55077806--55077898	18	5.2	18	93	0	159	26	24	17	31	1.97
55077806--55077898	36	2.6	36	98	0	177	26	24	17	31	1.97
55082512--55082604	18	5.2	18	90	0	150	27	24	16	31	1.96
55086658--55086688	11	2.8	11	95	0	53	19	48	3	29	1.64
55089647--55089815	39	4.3	38	87	1	194	36	10	31	21	1.88
55092912--55094317	142	9.9	142	82	7	1691	33	9	22	35	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172