genome.fa.s10.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  170  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55722097--55722242	37	4.0	37	93	1	242	24	21	16	36	1.94
55722206--55722474	46	5.6	46	84	10	340	28	22	14	34	1.93
55722249--55722468	52	4.3	52	85	8	299	27	22	14	35	1.93
55722206--55722474	98	2.7	98	93	0	457	28	22	14	34	1.93
55746578--55746631	24	2.3	23	81	15	67	38	1	0	59	1.08
55752318--55752437	60	2.0	60	100	0	240	33	20	8	38	1.82
55753005--55753070	32	2.1	32	100	0	132	39	12	3	45	1.57
55753952--55754088	58	2.3	60	77	18	146	56	0	6	35	1.30
55759421--55759623	46	4.3	48	88	7	265	35	14	21	28	1.92
55759355--55759623	98	2.7	98	93	0	457	34	14	22	28	1.93
55759587--55759732	37	4.0	37	93	1	242	36	16	21	24	1.94
55760986--55761153	58	3.0	58	87	10	237	22	13	30	33	1.92
55761005--55761095	28	3.2	28	66	22	80	25	15	31	27	1.95
55761046--55761188	49	2.9	49	93	0	232	23	13	30	32	1.94
55764380--55764582	46	4.3	48	88	7	265	35	14	21	28	1.92
55764314--55764582	98	2.7	98	93	0	457	34	14	22	28	1.93
55764546--55764691	37	4.0	37	93	1	242	36	16	21	24	1.94
55767331--55767355	6	4.2	6	100	0	50	48	0	0	52	1.00
55782665--55782703	16	2.5	16	83	4	53	20	5	7	66	1.36
55782751--55782775	13	1.9	13	100	0	50	56	0	0	44	0.99
55784905--55785089	40	4.7	40	81	5	187	27	28	20	23	1.99
55784872--55785089	40	5.5	39	78	7	174	26	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55790775--55790805	12	2.6	12	100	0	62	48	9	6	35	1.62
55791984--55792097	47	2.3	49	72	17	119	18	22	23	35	1.96
55792121--55792285	50	3.3	50	79	4	156	22	30	17	29	1.97
55795323--55795499	50	3.5	50	86	3	248	35	16	22	25	1.94
55795475--55795584	31	3.5	31	94	0	193	28	18	28	25	1.98
55795764--55795864	50	2.0	50	98	0	193	38	20	11	28	1.88
55796291--55796564	46	6.0	46	93	0	433	22	23	14	38	1.92
55798968--55799072	42	2.5	42	85	4	140	31	12	26	29	1.93
55801108--55801151	21	2.1	21	100	0	88	50	18	27	4	1.66
55819311--55819355	21	2.1	21	84	8	56	33	0	0	66	0.92
55819310--55819378	9	7.2	9	74	18	59	37	0	1	60	1.06
55824587--55824633	25	1.9	24	82	4	58	25	4	4	65	1.29
55829531--55829580	17	2.7	20	78	18	70	10	0	44	46	1.37
55834170--55834219	17	2.7	20	78	18	70	10	0	44	46	1.37
55842095--55842167	19	3.6	20	78	17	80	65	0	34	0	0.93
55842100--55842170	23	3.3	21	81	16	83	66	0	33	0	0.92
55842095--55842170	3	26.3	3	73	21	65	65	0	34	0	0.93
55842663--55842705	17	2.6	16	89	7	68	76	2	6	13	1.08
55842742--55843355	138	4.5	137	81	11	642	57	7	6	28	1.50
55843544--55843601	16	3.6	16	74	6	55	48	1	0	50	1.11
55843542--55843638	38	2.5	38	78	8	108	43	1	4	51	1.27
55849673--55849714	17	2.6	16	92	7	75	16	7	0	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55849673--55849755	17	5.1	16	73	7	60	21	6	2	69	1.21
55850222--55850288	3	23.0	3	74	17	61	0	34	0	65	0.93
55850447--55850486	21	2.0	20	90	5	62	5	15	10	70	1.32
55850613--55851185	238	2.4	237	83	2	745	28	15	23	32	1.95
55851018--55851394	209	1.8	208	85	5	537	27	14	24	32	1.95
55856349--55856382	10	3.3	10	84	8	50	17	2	2	76	1.04
55859601--55859655	25	2.2	24	81	9	65	54	9	21	14	1.68
55860076--55860131	23	2.4	23	81	0	58	37	26	25	10	1.88
55862843--55862881	19	2.0	20	90	5	62	20	0	7	71	1.10
55862862--55862907	25	1.9	23	86	8	65	28	0	8	63	1.24
55863080--55863125	23	2.2	20	84	11	56	36	6	4	52	1.47
55865450--55865474	13	1.9	13	100	0	50	12	0	0	88	0.53
55865431--55865509	38	2.2	35	80	14	83	16	5	8	69	1.32
55866106--55866165	3	20.3	3	72	3	50	28	3	5	63	1.31
55866337--55866513	3	58.3	3	75	14	123	28	5	1	63	1.26
55866330--55866433	34	3.1	34	95	0	181	29	3	0	66	1.09
55869124--55869162	20	1.9	21	85	15	55	43	7	10	38	1.67
55881437--55881473	6	6.2	6	100	0	74	16	16	51	16	1.77
55885170--55885200	9	3.4	9	100	0	62	90	0	0	9	0.46
55888337--55888425	43	2.1	43	97	0	169	33	3	14	48	1.61
55889670--55889713	22	2.0	22	90	0	70	63	0	4	31	1.14
55889760--55889823	30	2.2	30	85	2	85	31	29	4	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55900534--55900558	13	1.9	13	100	0	50	48	0	0	52	1.00
55900590--55900631	13	2.9	14	80	13	50	54	0	0	45	0.99
55900594--55900630	16	2.3	16	86	13	58	59	0	0	40	0.97
55900664--55900720	15	3.5	15	71	17	51	50	0	1	47	1.11
55904107--55904160	19	2.8	20	86	13	69	33	0	9	57	1.31
55905917--55905965	24	2.0	24	100	0	98	28	34	12	24	1.91
55907105--55907144	20	2.0	20	95	0	71	20	32	20	27	1.97
55907392--55907523	3	44.0	3	71	14	69	65	1	3	29	1.19
55907456--55907521	29	2.2	31	86	7	93	66	0	4	28	1.11
55907877--55907957	30	2.7	30	86	5	112	23	2	44	29	1.66
55910435--55910504	34	2.0	35	88	2	106	34	10	0	55	1.33
55911938--55912043	37	2.9	37	90	2	162	25	22	16	35	1.94
55912006--55912170	46	3.2	52	84	11	243	27	23	14	35	1.93
55920420--55920532	3	37.7	3	73	15	74	30	3	1	64	1.20
55920420--55920497	17	4.4	18	74	16	67	30	3	0	65	1.10
55922683--55922901	79	2.8	78	86	2	303	32	21	15	31	1.94
55922877--55923014	40	3.5	40	81	0	141	34	19	13	31	1.91
55923345--55923525	90	2.0	91	96	2	337	37	12	4	45	1.61
55925801--55925825	10	2.5	10	100	0	50	24	0	0	76	0.80
55936447--55936486	21	2.0	20	85	14	55	35	5	5	55	1.44
55944687--55944732	23	2.0	23	86	4	65	50	0	4	45	1.21
55944670--55944706	19	1.9	20	88	5	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55945733--55945775	21	2.0	21	100	0	86	16	18	9	55	1.67
55947232--55947284	24	2.2	24	100	0	106	15	15	13	56	1.67
55950732--55950756	5	5.0	5	100	0	50	40	0	0	60	0.97
55950791--55950851	30	2.0	30	81	9	70	59	6	34	0	1.24
55952465--55952615	41	3.8	41	92	2	236	19	23	26	30	1.98
55962730--55962822	18	5.2	18	86	0	114	27	21	16	34	1.95
55962730--55962822	36	2.6	36	89	0	141	27	21	16	34	1.95
55971465--55971523	28	2.0	28	87	9	82	40	16	3	38	1.66
55977539--55977571	17	2.0	16	94	5	57	30	21	6	42	1.77
55983100--55983205	39	2.7	39	85	5	126	36	1	10	50	1.47
55989475--55989523	6	7.8	6	78	17	55	16	2	4	77	1.01
55991200--55991431	115	2.0	116	94	1	412	40	23	4	31	1.75
55996166--55996234	34	2.0	34	100	0	138	44	17	17	20	1.86
56000684--56000807	43	2.9	43	77	7	117	33	28	18	20	1.96
56006927--56006975	21	2.4	21	86	3	64	38	10	32	18	1.84
56010773--56010821	21	2.3	22	92	7	91	28	0	12	59	1.34
56010809--56010930	60	2.0	60	93	0	208	31	0	13	54	1.39
56011044--56011082	16	2.4	16	100	0	78	35	0	5	58	1.20
56012713--56012765	6	8.8	6	91	0	79	20	32	45	1	1.62
56012707--56012769	18	3.5	18	88	0	90	25	28	44	1	1.63
56012719--56012780	18	3.4	18	82	8	72	25	27	45	1	1.63
56016319--56016389	27	2.6	27	82	4	81	23	30	25	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56021230--56021266	18	2.0	19	89	5	58	67	2	0	29	1.04
56026977--56027048	34	2.1	34	97	0	135	37	6	20	34	1.80
56037435--56037487	15	3.6	15	74	20	58	43	5	0	50	1.25
56041662--56041691	14	2.1	14	93	0	51	26	36	0	36	1.57
56046824--56046901	15	5.2	15	70	11	70	43	7	23	25	1.80
56046817--56046901	30	2.8	30	96	0	152	44	7	23	24	1.78
56051482--56052325	30	28.1	30	99	0	1652	43	6	23	26	1.78
56056283--56056312	14	2.1	15	93	6	53	26	0	3	70	1.03
56059387--56059697	87	3.6	87	88	0	471	23	21	24	30	1.99
56060114--56060309	108	1.8	108	92	0	329	46	10	17	25	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172