genome.fa.s10.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  169  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55421020--55421055	6	6.0	6	90	0	54	0	55	16	27	1.42
55423394--55423426	15	2.2	15	94	0	57	51	0	15	33	1.43
55427555--55427584	14	2.1	14	100	0	60	43	13	0	43	1.43
55433676--55433756	10	8.0	10	73	16	51	53	0	3	43	1.18
55433709--55433759	21	2.4	21	71	12	50	54	0	5	39	1.24
55433781--55433831	19	2.6	19	84	9	59	54	1	1	41	1.22
55433781--55433834	20	2.7	21	80	11	60	51	1	3	42	1.30
55434061--55434123	20	3.3	19	84	8	74	42	4	1	50	1.32
55434061--55434138	38	2.0	40	82	9	99	42	3	1	52	1.27
55434071--55434138	19	3.5	19	78	9	66	42	1	1	54	1.18
55434160--55434205	19	2.4	20	80	16	53	34	4	4	56	1.39
55436049--55436090	14	2.9	14	82	10	50	64	0	0	35	0.94
55442418--55442462	22	2.0	22	95	0	81	42	17	15	24	1.88
55444424--55444504	31	2.7	30	79	7	83	53	7	6	33	1.54
55446169--55446206	20	1.9	20	88	0	58	28	0	21	50	1.49
55448176--55449119	471	2.0	471	100	0	1888	32	17	23	26	1.96
55448898--55449839	471	2.0	471	98	0	1839	31	18	23	26	1.97
55451883--55451993	47	2.4	47	83	6	145	36	23	15	25	1.94
55452755--55452831	4	18.8	4	76	5	64	5	25	3	64	1.31
55453586--55453802	112	1.9	112	99	0	425	34	20	11	33	1.89
55458029--55458137	39	2.8	39	91	1	175	22	22	21	33	1.97
55458253--55458525	137	2.0	137	97	0	510	35	21	8	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55461341--55461451	47	2.4	47	83	6	145	35	22	16	26	1.95
55462215--55462294	4	18.8	4	72	12	61	6	26	3	63	1.35
55464899--55464932	15	2.1	15	89	10	50	0	26	2	70	1.01
55465716--55465744	14	2.0	15	93	6	51	6	17	6	68	1.34
55468799--55468827	14	2.1	14	100	0	58	34	13	13	37	1.85
55474885--55474917	3	11.0	3	100	0	66	33	0	0	66	0.92
55487323--55487462	39	3.6	39	91	0	217	37	24	25	12	1.90
55487321--55487462	18	7.4	18	71	18	99	37	24	25	12	1.91
55490504--55490557	26	2.1	26	96	0	99	35	14	16	33	1.90
55491526--55491847	46	7.0	46	97	0	572	22	23	14	38	1.92
55493924--55493962	16	2.4	16	91	0	60	0	30	0	69	0.89
55500400--55500445	18	2.6	18	83	10	58	36	2	6	54	1.39
55500665--55500724	28	2.1	28	87	3	84	56	5	0	38	1.21
55501079--55501109	3	10.3	3	100	0	62	35	0	0	64	0.94
55513657--55513703	23	2.0	24	83	4	60	36	6	4	53	1.46
55513777--55513843	34	2.0	34	100	0	134	44	14	2	37	1.61
55519939--55520035	6	16.2	6	96	0	176	49	17	0	32	1.47
55525614--55525887	46	6.0	46	93	0	395	41	14	22	20	1.90
55526173--55526205	17	2.0	17	94	5	59	48	0	15	36	1.45
55531812--55531840	12	2.4	12	100	0	58	65	6	0	27	1.18
55537959--55537988	15	2.0	15	100	0	60	26	20	6	46	1.75
55539538--55539572	17	2.0	18	88	5	54	54	5	0	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55541211--55541255	22	2.0	23	83	12	58	40	2	13	44	1.56
55541274--55541320	19	2.4	19	80	13	51	34	2	2	61	1.20
55543158--55543298	70	2.0	70	88	0	210	34	19	12	34	1.88
55543274--55543340	33	2.0	33	100	0	134	40	20	14	23	1.90
55552344--55552410	23	3.0	23	73	4	57	29	11	7	50	1.66
55561600--55561686	27	3.2	25	79	15	84	55	1	0	43	1.07
55561611--55561686	27	2.8	26	83	15	91	55	1	0	43	1.08
55561617--55561686	29	2.5	27	90	4	104	55	1	0	42	1.08
55566842--55566882	6	6.5	6	83	10	55	78	2	0	19	0.87
55566834--55566877	20	2.1	21	91	4	72	70	2	0	27	0.99
55566845--55566884	20	2.0	20	90	0	62	75	5	0	20	0.99
55566902--55566959	9	6.6	9	80	4	55	27	5	22	44	1.74
55567772--55567807	11	3.3	11	88	0	54	66	0	5	27	1.13
55567772--55567819	22	2.2	22	84	0	60	62	2	10	25	1.38
55572794--55572826	17	1.9	17	100	0	66	45	6	18	30	1.73
55571240--55574251	630	4.8	615	84	6	3367	35	16	14	33	1.90
55584134--55584216	18	4.6	18	70	5	62	40	0	2	56	1.12
55584134--55584167	17	2.0	17	88	0	50	41	0	0	58	0.98
55584163--55584199	19	2.0	18	89	5	56	40	0	5	54	1.24
55584340--55584391	23	2.3	23	80	6	61	34	17	7	40	1.78
55585872--55585896	9	2.8	9	100	0	50	60	0	0	40	0.97
55594046--55594133	42	2.1	41	95	2	158	39	14	23	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55598613--55598714	24	4.0	24	75	14	80	37	21	21	19	1.95
55598674--55598762	27	3.3	27	96	0	151	33	19	22	24	1.97
55598722--55598895	50	3.5	50	75	9	147	32	17	28	21	1.96
55598779--55598893	25	4.7	24	76	7	88	33	16	31	18	1.93
55598765--55598920	50	3.1	51	79	8	144	32	16	28	22	1.95
55598827--55598895	25	2.8	25	81	0	93	30	18	33	17	1.94
55601993--55602021	13	2.1	14	93	6	51	51	0	3	44	1.18
55609203--55609392	95	2.0	95	98	0	371	26	28	10	34	1.90
55609537--55609700	82	2.0	82	96	0	301	30	18	24	26	1.98
55616299--55616327	2	14.5	2	100	0	58	51	0	0	48	1.00
55623611--55623638	13	2.2	13	100	0	56	0	14	7	78	0.95
55639216--55639346	68	1.9	68	93	0	226	43	6	20	29	1.78
55641356--55641386	15	2.0	16	93	6	55	25	0	0	74	0.82
55642371--55642470	50	2.0	50	100	0	200	36	14	18	32	1.90
55644342--55644481	72	2.0	71	94	1	244	45	6	15	32	1.71
55644467--55645170	370	1.9	375	85	5	971	40	10	12	37	1.77
55645367--55645451	43	2.0	43	100	0	170	28	5	21	44	1.75
55645410--55649090	812	4.6	806	82	5	4014	38	12	13	35	1.83
55646415--55649090	404	6.6	405	83	4	3245	38	12	13	35	1.83
55650300--55650511	103	2.1	101	84	3	273	43	9	9	37	1.69
55655125--55655154	3	10.0	3	92	0	51	36	33	30	0	1.58
55658393--55658455	31	2.0	31	93	0	108	46	14	6	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55658911--55658954	19	2.2	20	88	4	63	34	0	9	56	1.31
55658922--55658963	19	2.2	19	83	8	50	33	0	11	54	1.37
55658912--55659056	51	3.0	47	71	12	109	31	3	6	57	1.42
55659038--55659085	23	2.0	24	84	11	64	39	0	2	58	1.10
55660136--55660235	44	2.2	46	89	8	152	30	12	20	38	1.88
55660585--55660644	29	2.0	30	87	3	86	50	15	8	26	1.72
55660682--55660706	4	6.2	4	100	0	50	48	0	0	52	1.00
55671446--55671507	28	2.2	28	88	0	88	30	29	8	32	1.86
55673011--55673068	30	1.9	30	89	0	89	41	3	24	31	1.71
55673280--55673311	13	2.5	13	94	0	55	31	0	12	56	1.37
55673406--55673647	50	4.7	50	86	4	297	26	24	29	19	1.99
55673406--55673655	100	2.4	103	88	6	364	26	24	29	20	1.99
55679634--55679696	28	2.2	28	91	0	99	31	30	6	31	1.83
55683645--55683682	18	2.3	16	83	16	51	34	7	7	50	1.61
55687298--55687349	20	2.5	20	84	3	77	48	11	13	26	1.77
55688173--55688227	20	2.7	20	81	16	67	40	1	1	56	1.21
55688119--55688208	38	2.5	35	74	13	85	36	2	2	58	1.22
55688164--55688230	26	2.6	26	79	9	66	37	1	1	59	1.16
55688508--55688545	13	2.8	14	84	4	51	76	0	7	15	1.01
55688921--55688963	22	2.0	22	100	0	86	32	0	32	34	1.58
55689656--55689741	45	1.9	45	86	9	122	22	19	17	40	1.91
55689752--55689786	18	1.9	18	88	0	52	17	25	17	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55690867--55690905	21	1.9	21	84	5	53	30	25	5	38	1.78
55692700--55692756	26	2.2	26	100	0	114	26	3	10	59	1.46
55703079--55703188	34	3.2	34	82	0	139	48	14	10	26	1.77
55703156--55703269	55	2.1	55	89	0	174	50	13	7	28	1.68
55703294--55703430	55	2.5	55	79	0	148	51	15	5	27	1.66
55717196--55717341	37	4.0	37	93	1	242	24	21	16	36	1.94
55717305--55717573	46	5.6	46	84	10	340	28	22	14	34	1.93
55717348--55717567	52	4.3	52	85	8	299	27	22	14	35	1.93
55717305--55717573	98	2.7	98	93	0	457	28	22	14	34	1.93
55720699--55720844	49	3.0	49	90	1	229	32	29	13	23	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172