genome.fa.s10.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  51  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16654201--16654344	46	3.1	44	73	15	123	29	27	19	22	1.98
16661698--16661870	46	3.7	46	77	13	201	30	27	20	21	1.98
16661703--16661873	93	1.8	93	93	0	297	29	28	21	21	1.98
16664057--16664204	43	3.5	43	73	9	124	27	26	18	27	1.98
16666301--16666346	22	2.1	22	100	0	92	21	13	17	47	1.81
16671584--16671755	93	1.8	93	92	2	292	27	28	21	22	1.99
16671577--16671752	46	3.8	47	76	12	193	28	28	21	21	1.98
16675562--16675694	51	2.6	51	83	7	146	28	29	15	27	1.96
16675607--16675740	51	2.6	51	83	2	144	32	26	15	25	1.96
16681446--16681504	30	2.0	30	90	6	93	25	25	13	35	1.93
16681463--16681593	30	4.4	30	81	6	133	18	25	14	41	1.88
16681465--16681627	60	2.8	59	74	9	170	20	25	14	39	1.90
16683769--16683823	17	3.2	17	94	2	92	21	30	32	14	1.93
16684033--16684285	27	9.4	28	85	5	251	28	24	9	38	1.85
16684039--16684285	54	4.6	54	86	4	318	28	23	9	38	1.86
16684040--16684282	81	3.0	82	87	3	339	28	23	9	39	1.85
16684291--16684431	27	5.2	27	85	0	156	34	16	21	27	1.94
16684631--16684713	27	3.1	26	84	5	94	20	21	20	37	1.95
16684801--16684859	22	2.7	22	81	0	64	20	25	22	32	1.98
16685238--16685381	6	23.8	6	78	14	154	20	17	13	48	1.81
16685244--16685370	67	1.9	67	95	3	229	20	17	14	48	1.81
16685213--16685376	73	2.2	73	89	4	242	20	17	14	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16685239--16685402	24	6.8	24	78	15	144	20	17	14	48	1.81
16687397--16687646	27	9.3	27	85	3	315	27	22	9	40	1.85
16687651--16687791	27	5.2	27	85	0	174	35	18	19	26	1.95
16687651--16687792	54	2.6	54	87	0	203	35	19	19	26	1.95
16687991--16688073	27	3.1	26	87	5	112	19	21	21	37	1.94
16688392--16688457	27	2.5	27	85	7	82	16	22	22	37	1.93
16688600--16688834	6	38.8	6	75	16	200	21	17	13	48	1.80
16688606--16688834	79	2.9	78	87	7	329	21	17	13	48	1.80
16688575--16688834	79	3.2	79	84	8	303	21	17	13	48	1.80
16693548--16693682	49	2.8	48	84	7	184	26	30	17	25	1.97
16693548--16693710	49	3.3	49	83	9	183	25	30	19	25	1.98
16700614--16700653	17	2.4	17	86	0	53	35	12	10	42	1.76
16705569--16705662	33	2.9	33	69	18	90	29	27	19	23	1.98
16705668--16705750	31	2.7	31	94	3	143	28	26	15	28	1.96
16705969--16706038	25	2.8	25	91	0	104	27	22	22	27	1.99
16706851--16706912	27	2.3	27	81	10	74	20	22	19	37	1.95
16706966--16707063	27	3.6	27	74	15	83	32	7	18	41	1.77
16707029--16707179	27	5.6	27	79	7	146	27	8	21	42	1.82
16707188--16707275	27	3.3	26	81	9	97	40	6	22	29	1.80
16709057--16709221	46	3.6	46	75	14	185	23	18	27	30	1.97
16709103--16709269	47	3.6	47	71	13	164	23	19	26	30	1.98
16709052--16709315	93	2.8	93	89	0	393	23	20	26	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16711639--16711670	16	2.0	16	100	0	64	43	18	12	25	1.85
16724890--16725036	43	3.4	42	71	9	118	36	25	14	22	1.93
16732102--16732143	22	2.1	19	86	13	57	52	0	2	45	1.13
16732198--16732258	30	2.1	30	84	3	79	47	11	9	31	1.72
16735420--16735687	40	6.6	41	79	9	298	27	28	21	23	1.99
16735420--16735687	83	3.3	83	88	4	384	27	28	21	23	1.99
16743552--16743779	83	2.8	83	90	2	356	26	28	22	23	1.99
16743552--16743779	40	5.5	42	82	11	285	26	28	22	23	1.99
16748532--16748605	29	2.6	29	84	4	87	24	32	14	28	1.95
16763230--16763352	57	2.1	58	82	4	142	30	21	18	28	1.97
16772780--16772897	47	2.5	46	77	2	119	34	6	28	29	1.83
16774840--16774882	16	2.7	15	82	13	50	27	4	0	67	1.10
16787992--16788101	43	2.6	42	78	5	123	30	18	22	28	1.97
16791397--16791487	27	3.4	27	78	3	94	38	15	18	27	1.91
16791734--16791829	22	4.4	22	86	0	120	10	28	30	31	1.90
16791733--16791819	44	2.0	44	90	0	138	11	26	29	32	1.91
16800948--16801176	116	2.0	116	91	0	368	33	6	15	44	1.74
16807375--16807414	12	3.1	13	89	10	64	77	0	22	0	0.77
16807372--16807416	16	2.8	17	83	10	58	75	0	24	0	0.80
16810407--16810443	14	2.8	13	88	11	58	62	10	5	21	1.48
16811280--16811318	16	2.4	17	86	4	53	48	33	5	12	1.63
16812820--16812919	29	3.5	29	87	1	139	28	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16816795--16817040	85	3.0	85	87	7	327	28	27	20	23	1.99
16816913--16817091	37	4.8	37	91	0	286	25	29	18	26	1.98
16817240--16817424	48	3.8	48	90	4	291	31	25	7	35	1.83
16817240--16817423	98	1.9	97	91	4	300	30	26	7	35	1.83
16817394--16817587	47	4.1	47	89	0	280	26	28	10	33	1.90
16817487--16817558	22	3.1	22	64	24	58	23	29	13	33	1.93
16817347--16817587	94	2.6	94	83	4	281	27	28	9	33	1.89
16832317--16832541	40	5.7	40	86	5	296	24	22	28	25	2.00
16832317--16832574	119	2.2	119	81	6	292	25	21	27	25	1.99
16842764--16842803	19	2.2	19	86	8	57	42	5	12	40	1.64
16843753--16843791	18	2.1	19	90	4	62	33	0	2	64	1.08
16848050--16848122	24	3.0	24	97	0	137	41	12	15	31	1.84
16857607--16857791	40	4.6	40	87	4	246	22	17	28	31	1.96
16870428--16870605	27	6.6	27	83	3	205	26	15	28	29	1.96
16870429--16870584	82	1.9	81	88	3	233	26	15	28	29	1.96
16870425--16870605	82	2.2	81	83	2	229	27	15	27	29	1.96
16878490--16878667	27	6.6	27	83	3	205	26	15	28	29	1.96
16878491--16878646	82	1.9	81	88	3	233	26	15	28	29	1.96
16878487--16878667	82	2.2	81	83	2	229	27	15	27	29	1.96
16885825--16885936	28	4.0	29	79	4	113	28	27	15	28	1.96
16888794--16888977	67	2.8	64	76	8	176	29	17	29	22	1.97
16893556--16893724	43	4.0	43	75	9	175	27	17	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16898263--16898660	55	7.5	53	76	10	366	23	24	17	34	1.96
16898252--16898668	54	7.9	54	78	9	383	23	24	17	34	1.95
16898278--16898721	209	2.1	209	96	0	816	24	24	16	35	1.95
16898647--16898768	47	2.6	47	92	0	199	27	23	12	36	1.91
16898908--16898991	44	1.9	44	85	4	116	25	25	11	38	1.90
16906229--16906308	29	2.8	29	80	1	90	27	17	28	26	1.98
16908621--16908654	18	1.9	18	88	5	52	41	11	17	29	1.85
16910768--16910874	56	1.9	56	96	0	196	28	29	15	25	1.96
16912348--16912389	21	2.0	21	95	0	75	19	11	28	40	1.87
16913810--16913961	40	3.8	40	89	2	207	25	28	21	24	1.99
16928760--16928794	12	2.9	12	86	0	52	74	8	2	14	1.17
16928831--16928886	16	3.7	15	86	9	78	66	5	10	17	1.41
16928833--16928886	15	3.5	15	84	5	72	68	5	9	16	1.35
16928833--16928886	17	3.4	17	85	7	69	68	5	9	16	1.35
16937897--16938051	43	3.7	42	80	3	195	25	18	27	29	1.98
16938320--16938460	71	2.0	71	98	0	273	32	4	18	44	1.69
16944216--16944298	9	8.7	9	68	21	53	69	4	0	25	1.07
16944213--16944298	18	5.1	17	72	14	70	68	4	0	26	1.09
16944212--16944299	10	9.2	10	68	17	53	67	4	0	28	1.11
16947207--16947244	15	2.5	15	86	4	58	18	2	21	57	1.52
16949211--16949263	21	2.5	21	84	0	70	30	33	9	26	1.88
16949572--16949704	10	13.6	9	67	16	52	36	2	3	57	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16949572--16949622	18	2.6	19	81	9	59	31	3	7	56	1.46
16949583--16949690	20	5.4	20	70	14	73	37	1	2	57	1.24
16949631--16949704	20	3.8	20	78	18	75	36	0	1	62	1.04
16958248--16958306	27	2.2	27	84	6	75	27	15	22	35	1.94
16958535--16958559	10	2.5	10	100	0	50	32	32	24	12	1.91
16961871--16961933	24	2.7	23	87	4	90	22	22	20	34	1.96
16961873--16961954	23	3.5	23	85	6	96	23	21	20	34	1.97
16962076--16962219	19	7.5	19	72	11	107	36	7	17	38	1.78
16962084--16962218	57	2.4	57	86	3	173	36	8	17	37	1.80
16964512--16964575	29	2.3	28	84	7	85	43	6	23	26	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172