genome.fa.s10.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  56  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18251754--18251809	18	3.3	18	73	14	64	44	12	1	41	1.53
18251738--18251809	33	2.2	33	94	0	126	43	13	2	40	1.59
18251748--18251799	15	3.3	15	72	15	50	42	17	1	38	1.60
18253996--18254173	27	6.6	27	85	3	214	27	15	27	29	1.96
18253993--18254173	82	2.2	81	85	2	238	27	15	27	29	1.96
18261392--18261502	47	2.4	47	89	0	159	34	8	29	27	1.86
18276623--18276666	23	2.0	22	86	4	61	52	27	4	15	1.63
18277349--18277450	43	2.4	43	78	4	109	33	22	17	26	1.96
18280589--18280682	20	4.8	20	76	8	86	32	20	32	13	1.92
18280590--18280682	40	2.3	40	90	3	152	32	20	33	13	1.92
18281221--18281364	75	1.9	75	92	0	243	27	24	22	25	2.00
18282389--18282480	24	3.9	23	74	9	71	41	16	19	22	1.90
18283835--18283875	21	2.0	20	86	9	57	17	34	14	34	1.90
18297648--18297737	29	3.1	29	90	1	137	27	14	25	32	1.95
18299413--18299622	40	5.3	39	89	4	242	25	21	27	25	1.99
18299360--18299622	120	2.2	120	82	4	309	25	21	27	25	1.99
18299361--18299657	80	3.7	80	81	6	230	26	21	27	24	1.99
18307359--18307568	40	5.3	39	89	4	242	25	21	27	25	1.99
18307306--18307568	120	2.2	120	82	4	309	25	21	27	25	1.99
18307307--18307603	80	3.7	80	81	6	230	26	21	27	24	1.99
18318513--18318657	40	3.6	40	96	1	256	22	23	28	26	1.99
18328494--18328612	60	2.0	60	98	0	229	49	19	5	25	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18329721--18329824	48	2.2	47	81	10	113	19	29	21	29	1.97
18331356--18331596	43	5.6	43	100	0	482	29	34	26	9	1.88
18331589--18331712	38	3.2	38	89	2	167	27	27	23	21	1.99
18335447--18335595	44	3.5	41	77	14	135	30	24	19	26	1.98
18335481--18335608	44	3.0	42	78	14	129	32	23	19	24	1.97
18335439--18335600	43	3.8	43	78	11	145	31	24	19	24	1.98
18337310--18337399	47	1.9	47	83	0	117	40	14	22	23	1.90
18337338--18337400	23	2.7	24	80	5	74	39	15	20	23	1.91
18337322--18337409	24	3.7	24	75	6	81	38	15	20	25	1.92
18342970--18343019	19	2.5	20	87	12	77	32	0	4	64	1.12
18342981--18343016	9	3.9	9	88	3	54	25	0	5	69	1.10
18343028--18343099	10	7.5	10	73	13	62	36	0	5	58	1.22
18343036--18343094	20	3.2	18	88	11	93	37	0	5	57	1.21
18343054--18343111	11	5.5	11	78	12	59	34	0	3	62	1.12
18343370--18343429	26	2.3	26	80	11	68	30	1	1	66	1.11
18348712--18348750	17	2.4	16	83	8	51	23	0	5	71	1.05
18351023--18351079	21	2.7	21	88	0	87	52	5	15	26	1.64
18351461--18351538	37	2.1	37	92	0	129	39	5	17	37	1.72
18351478--18351538	21	3.1	21	61	29	53	39	4	16	39	1.70
18354802--18354895	6	15.3	6	72	19	70	19	15	15	48	1.81
18354802--18354886	25	3.4	25	77	7	86	18	16	15	49	1.80
18356537--18356869	27	12.6	26	75	11	110	38	21	8	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18356636--18356780	54	2.7	54	85	0	182	33	22	6	37	1.81
18356636--18356793	81	2.0	81	84	0	208	34	22	6	36	1.81
18356676--18356869	54	3.6	54	80	1	174	37	23	7	31	1.83
18356737--18356872	27	5.0	27	81	3	139	40	21	8	29	1.83
18365358--18365489	29	4.6	29	93	1	203	24	16	34	25	1.96
18367141--18367243	27	3.8	27	86	0	134	32	19	22	26	1.97
18367661--18367716	12	4.6	12	74	12	51	19	12	16	51	1.75
18367701--18367746	24	1.9	24	86	0	65	21	13	10	54	1.69
18375190--18375297	27	4.0	26	81	8	117	39	22	21	16	1.92
18376463--18376503	13	3.1	14	75	13	50	53	0	39	7	1.29
18376463--18376520	26	2.2	26	81	6	64	55	0	39	5	1.22
18379597--18379746	55	2.8	54	80	4	149	26	15	29	28	1.96
18379569--18379746	27	6.6	27	77	6	146	25	15	28	30	1.96
18379570--18379725	82	1.9	81	81	6	190	25	16	28	30	1.96
18381724--18381973	40	6.3	40	83	3	265	28	26	21	24	1.99
18383305--18383416	53	2.1	53	96	0	206	16	28	8	45	1.78
18390030--18390199	40	4.2	40	88	1	200	27	25	21	25	1.99
18391515--18391619	50	2.1	50	98	0	201	18	29	9	42	1.81
18394232--18394284	11	5.0	11	75	9	56	33	20	13	32	1.91
18394224--18394284	21	2.9	21	87	4	88	36	19	11	32	1.88
18400177--18400298	61	2.0	61	98	0	235	27	32	10	29	1.90
18402351--18402403	11	5.0	11	75	9	56	32	22	13	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18402343--18402403	21	2.9	21	87	4	88	34	21	11	32	1.89
18408385--18408414	13	2.3	13	100	0	60	26	10	23	40	1.86
18413384--18413421	19	2.0	19	85	10	51	13	21	44	21	1.85
18414908--18414995	46	1.9	45	83	2	113	27	21	18	32	1.96
18414909--18415006	46	2.2	46	79	1	108	29	21	16	32	1.95
18415850--18415913	31	2.1	31	84	0	83	28	21	14	35	1.92
18416126--18416248	24	5.2	24	88	3	187	27	21	21	30	1.98
18416128--18416249	47	2.6	47	92	0	208	27	20	21	30	1.98
18416128--18416247	23	5.1	23	88	3	177	28	20	21	29	1.98
18416298--18416364	20	3.3	20	93	0	116	32	20	11	34	1.90
18416298--18416353	11	5.5	11	71	16	57	32	19	12	35	1.89
18421449--18421539	45	2.0	45	93	0	155	25	20	19	34	1.97
18422270--18422307	19	2.0	20	85	15	53	39	23	0	36	1.55
18422536--18422657	46	2.7	46	93	0	199	29	27	21	21	1.98
18422534--18422676	46	3.1	45	84	6	137	29	27	20	21	1.98
18423079--18423139	30	2.0	30	87	3	86	36	24	3	36	1.72
18425064--18425123	30	2.0	30	86	0	84	33	25	5	36	1.78
18424993--18425282	146	2.0	146	96	0	535	34	18	9	37	1.83
18425210--18425269	30	2.0	30	86	0	84	31	25	5	38	1.77
18431909--18431946	19	2.0	20	85	15	53	39	23	0	36	1.55
18432171--18432345	46	3.8	49	79	12	181	29	28	20	21	1.98
18432176--18432345	92	1.8	92	92	0	286	28	29	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18432765--18432824	30	2.0	30	86	0	84	31	25	5	38	1.77
18436463--18436526	31	2.1	31	90	0	101	25	23	15	35	1.94
18436739--18436885	24	6.2	24	87	3	208	27	20	22	29	1.98
18436741--18436884	47	3.1	47	85	3	200	27	20	22	29	1.98
18436752--18436885	71	1.9	71	93	0	232	27	20	23	28	1.99
18440448--18440477	13	2.3	13	100	0	60	20	6	13	60	1.55
18450994--18451171	27	6.6	27	83	3	205	26	15	28	29	1.96
18450995--18451150	82	1.9	81	88	3	233	26	15	28	29	1.96
18450991--18451171	82	2.2	81	83	2	229	27	15	27	29	1.96
18460214--18460262	17	2.9	17	78	6	55	40	22	16	20	1.91
18466476--18466583	45	2.4	45	98	0	207	31	16	12	39	1.85
18470428--18470557	27	4.7	28	94	2	210	25	13	29	32	1.93
18470428--18470557	55	2.4	55	94	0	224	25	13	29	32	1.93
18475357--18475384	12	2.3	12	100	0	56	7	25	35	32	1.83
18477694--18477747	27	2.0	27	85	0	72	38	7	14	38	1.75
18478752--18478822	33	2.1	33	81	2	79	30	25	21	22	1.98
18478850--18478933	31	2.7	31	96	1	152	32	26	13	28	1.93
18478957--18479048	42	2.2	42	94	3	159	40	20	11	27	1.88
18479196--18479289	25	3.8	25	87	1	127	25	23	22	28	1.99
18480094--18480158	27	2.4	27	82	5	78	21	24	18	35	1.96
18480094--18480194	27	3.8	26	72	16	73	22	20	19	36	1.95
18480211--18480296	27	3.1	27	75	17	86	33	9	17	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18480208--18480452	54	4.5	54	76	5	179	30	9	19	40	1.83
18480274--18480454	27	6.7	27	81	5	197	28	8	20	41	1.81
18480483--18480603	27	4.5	27	88	6	174	39	6	24	28	1.80
18480483--18480625	54	2.7	54	86	3	191	39	9	24	27	1.85
18480483--18480625	27	5.3	27	87	5	155	39	9	24	27	1.85
18482934--18483017	31	2.7	31	92	1	143	27	26	16	29	1.97
18483041--18483132	42	2.2	42	94	0	157	40	20	11	27	1.88
18483244--18483349	50	2.1	51	81	8	119	25	22	19	32	1.98
18483280--18483349	25	2.8	25	88	0	104	27	22	22	27	1.99
18484159--18484223	27	2.4	27	82	5	78	23	23	18	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172