genome.fa.s10.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  71  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23470585--23470614	14	2.1	14	93	0	51	46	36	0	16	1.47
23472450--23472601	53	2.8	52	82	4	169	30	8	19	41	1.81
23472450--23472601	27	5.7	27	84	1	180	30	8	19	41	1.81
23472453--23472601	80	1.9	80	87	2	219	30	8	18	42	1.80
23472450--23472642	27	7.2	27	81	5	140	32	8	20	38	1.83
23472568--23472655	27	3.3	27	88	0	113	38	6	18	36	1.77
23484820--23484952	18	7.5	18	86	5	182	39	10	12	36	1.78
23484811--23484950	35	3.9	35	93	2	226	39	10	12	37	1.77
23490436--23490473	16	2.4	16	90	0	58	86	0	10	2	0.66
23490435--23490480	23	2.1	23	88	11	71	86	0	10	2	0.64
23490435--23490481	20	2.4	20	86	10	62	85	0	10	4	0.74
23491117--23491298	44	4.1	44	73	10	165	30	15	24	28	1.96
23491288--23491881	119	5.0	119	93	0	983	34	17	18	29	1.94
23491805--23492074	83	3.2	83	93	1	450	31	20	20	27	1.97
23492468--23492565	18	5.5	18	87	4	146	39	11	12	36	1.78
23492459--23492563	35	2.9	35	92	4	165	39	10	12	38	1.77
23505364--23505430	23	2.9	23	97	0	125	43	10	4	41	1.59
23509360--23509425	18	3.6	17	72	23	55	62	3	0	34	1.11
23511310--23511364	25	2.2	26	83	9	69	58	7	9	25	1.55
23511495--23511558	21	2.9	22	79	11	69	46	7	7	37	1.62
23515567--23515606	20	2.0	21	85	14	57	72	5	2	20	1.15
23515588--23515644	26	2.2	26	90	6	89	71	5	0	22	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23515593--23515685	34	2.7	33	75	9	96	68	5	2	23	1.21
23515593--23515701	34	3.2	32	70	24	80	68	6	2	22	1.25
23520676--23520700	9	2.8	9	100	0	50	88	0	0	12	0.53
23523802--23524138	170	2.0	170	92	1	568	37	14	17	30	1.90
23529465--23529561	40	2.4	41	86	6	128	26	16	27	28	1.97
23531407--23531584	27	6.6	27	83	3	205	26	15	28	29	1.96
23531408--23531563	82	1.9	81	88	3	233	26	15	28	29	1.96
23531404--23531584	82	2.2	81	83	2	229	27	15	27	29	1.96
23536381--23536447	34	2.0	34	100	0	134	32	20	20	25	1.97
23537895--23537928	16	2.1	17	88	5	52	55	8	11	23	1.63
23538470--23538535	13	4.9	14	77	20	61	65	1	3	30	1.17
23538467--23538542	27	2.8	27	78	15	77	63	1	3	31	1.21
23538585--23538744	44	3.8	43	73	20	115	58	1	4	35	1.26
23538666--23538725	3	19.0	3	74	16	50	61	1	1	35	1.16
23538666--23538725	20	3.2	19	84	11	70	61	1	1	35	1.16
23538663--23538746	42	2.1	41	82	12	104	61	1	1	35	1.11
23538647--23538804	54	2.9	52	75	16	135	61	1	4	32	1.24
23538646--23538734	17	5.1	17	74	20	60	60	1	2	35	1.16
23538765--23538804	21	1.9	21	89	0	62	60	0	7	32	1.25
23540219--23540463	83	3.0	83	91	0	382	27	19	19	33	1.96
23540411--23540855	119	3.7	119	91	0	701	30	18	16	34	1.93
23552734--23552773	19	2.1	19	86	9	55	42	5	20	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23554105--23554190	43	2.0	43	97	0	163	26	39	15	18	1.90
23556139--23556172	16	2.1	17	88	5	52	55	8	11	23	1.63
23556748--23556923	23	8.0	22	66	19	73	60	1	6	30	1.32
23556825--23556923	44	2.3	42	81	13	114	59	1	6	33	1.29
23556890--23556961	17	4.4	17	77	16	64	63	1	2	31	1.17
23556888--23556970	17	5.1	17	74	20	54	61	1	2	34	1.17
23556894--23556979	31	2.8	30	76	11	84	60	1	2	36	1.17
23564094--23564162	27	2.6	27	85	0	93	33	21	23	21	1.97
23566828--23566897	25	2.8	25	91	0	104	24	21	25	28	1.99
23567100--23567314	27	8.0	27	83	4	218	24	20	20	34	1.96
23567100--23567314	81	2.7	81	85	1	270	24	20	20	34	1.96
23567304--23567571	54	5.0	55	76	8	205	30	9	20	39	1.84
23567304--23567594	81	3.6	81	77	5	270	30	8	20	39	1.83
23567307--23567645	27	12.6	27	74	9	180	29	9	21	39	1.85
23567319--23567645	81	4.0	81	75	5	252	29	9	21	39	1.85
23572902--23573000	45	2.2	45	90	1	153	26	10	22	41	1.85
23577882--23577935	23	2.3	23	81	15	58	33	25	25	14	1.95
23577979--23578047	24	2.9	24	91	0	102	44	14	17	23	1.85
23582475--23582526	22	2.2	24	86	13	81	42	17	19	21	1.89
23582475--23582563	24	3.8	22	78	11	79	40	17	21	20	1.92
23587668--23587717	24	2.1	24	100	0	100	48	0	32	20	1.50
23597259--23597462	53	4.0	49	76	12	162	36	13	22	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23597280--23597469	53	3.7	52	79	7	181	37	13	22	26	1.91
23600533--23600693	42	3.8	42	79	14	152	24	16	26	32	1.96
23600535--23600676	42	3.3	43	87	6	182	25	16	26	30	1.97
23600522--23600693	43	4.0	44	78	14	162	25	15	26	32	1.96
23605331--23605369	19	2.2	19	86	9	55	41	0	28	30	1.57
23610100--23610143	14	3.3	14	90	6	65	29	36	18	15	1.92
23612227--23612296	27	2.6	27	95	2	113	31	28	12	27	1.93
23612227--23612324	28	3.5	28	90	2	135	31	28	13	26	1.94
23626095--23626138	18	2.4	18	85	7	54	75	4	6	13	1.17
23627226--23627334	38	2.8	39	73	6	96	22	21	26	30	1.98
23633005--23633082	37	2.1	37	86	6	106	44	11	12	30	1.78
23637889--23637969	24	3.4	24	79	3	101	32	22	12	33	1.91
23641363--23641419	20	2.8	19	75	19	53	29	3	7	59	1.40
23644380--23644422	21	2.0	21	90	0	68	44	11	20	23	1.84
23644962--23645200	129	1.9	128	84	4	320	33	14	28	23	1.94
23649083--23649138	29	2.0	28	82	3	67	37	12	5	44	1.65
23656114--23656478	49	7.6	49	94	2	616	32	7	29	29	1.86
23656597--23656675	37	2.1	37	90	0	122	24	18	31	25	1.98
23672050--23672183	60	2.3	58	78	11	139	48	2	1	47	1.23
23675933--23676014	42	2.0	42	92	0	137	15	25	15	42	1.87
23675949--23676015	21	3.2	21	68	8	64	16	25	14	43	1.86
23675944--23676039	42	2.3	42	87	0	129	16	22	16	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23675885--23676040	84	1.9	84	80	2	188	17	22	15	44	1.86
23676790--23676844	28	2.0	28	92	0	92	16	20	30	32	1.94
23679501--23679540	19	2.1	19	100	0	80	52	15	5	27	1.63
23681020--23681170	76	2.0	76	97	0	284	47	15	17	19	1.82
23684859--23684889	15	2.1	15	93	0	53	32	16	0	51	1.44
23686271--23686313	19	2.3	19	84	11	61	60	0	6	32	1.23
23686285--23686322	19	2.0	20	84	5	51	55	2	5	36	1.37
23688606--23688660	21	2.7	21	86	5	78	56	10	3	29	1.51
23688649--23688691	13	3.1	14	84	12	54	60	0	0	39	0.97
23691694--23691725	15	2.0	17	88	11	50	31	0	6	62	1.20
23703566--23704489	77	12.0	77	100	0	1848	32	14	16	36	1.89
23706957--23707103	66	2.2	66	87	3	208	40	3	4	52	1.37
23707098--23707133	9	3.8	9	86	13	54	52	2	0	44	1.15
23708264--23708423	40	4.0	40	99	0	311	30	25	5	39	1.77
23714479--23714623	40	3.6	40	85	4	193	25	24	26	23	2.00
23725926--23725964	19	2.1	19	85	9	53	17	5	2	74	1.12
23725908--23725973	22	3.0	21	79	18	64	18	6	3	72	1.18
23726161--23726220	3	20.0	3	96	0	111	33	1	0	65	1.03
23728372--23728429	29	2.0	28	90	3	89	48	8	22	20	1.77
23730916--23731099	94	2.0	94	93	0	314	28	26	26	17	1.98
23745166--23745193	14	2.0	14	100	0	56	28	0	28	42	1.56
23746705--23746745	11	3.7	11	96	0	73	46	12	0	41	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23748168--23748206	14	2.9	14	84	3	53	66	2	0	30	1.05
23748168--23748207	13	3.0	13	82	7	53	65	2	0	32	1.06
23748122--23748242	8	15.5	8	69	15	67	61	3	0	34	1.18
23748125--23748218	35	2.7	35	91	4	147	63	2	1	32	1.13
23748148--23748192	21	2.1	22	87	4	65	64	2	0	33	1.06
23751853--23751894	21	2.0	21	100	0	84	52	0	19	28	1.46
23752603--23752756	76	2.0	76	98	0	299	34	13	19	32	1.91
23771314--23771429	58	2.0	58	88	3	171	16	17	25	41	1.89
23773029--23773072	19	2.3	19	84	0	61	34	27	20	18	1.96
23773049--23773123	38	2.0	38	84	5	98	34	29	18	17	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172