genome.fa.s10.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  137  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45055926--45055972	21	2.3	21	89	7	71	82	0	14	2	0.75
45056205--45056285	38	2.2	35	91	6	126	24	12	46	16	1.81
45056321--45056345	12	2.1	12	100	0	50	16	8	36	40	1.77
45057616--45057687	20	3.5	20	74	14	67	31	1	4	62	1.23
45058278--45058319	15	2.8	15	85	0	57	33	0	19	47	1.49
45060494--45060524	9	3.3	9	91	8	53	19	3	0	77	0.90
45061325--45061456	25	5.5	23	68	16	65	34	4	3	57	1.34
45061342--45061465	27	4.8	25	67	11	72	35	4	3	57	1.34
45061339--45061545	25	8.2	25	67	13	77	33	6	4	55	1.45
45061698--45061745	16	3.1	15	90	6	69	31	2	2	64	1.16
45061698--45061749	8	6.5	8	82	8	61	30	1	1	65	1.14
45072441--45072465	13	1.9	13	100	0	50	88	0	0	12	0.53
45073726--45074185	159	2.9	159	86	1	627	25	25	12	36	1.91
45075321--45075363	4	10.8	4	100	0	86	51	25	0	23	1.49
45075361--45075387	4	6.8	4	100	0	54	51	25	22	0	1.48
45088286--45088333	16	3.1	15	90	6	69	31	2	2	64	1.16
45088286--45088337	8	6.5	8	82	8	61	30	1	1	65	1.14
45092371--45092679	46	6.7	46	89	0	386	39	15	24	20	1.91
45096575--45096722	31	4.8	32	88	7	218	26	27	19	26	1.99
45108176--45108214	20	2.0	20	85	10	53	25	0	12	61	1.31
45113234--45113292	25	2.4	25	97	0	109	35	20	6	37	1.79
45116784--45116816	16	2.1	16	100	0	66	36	0	33	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45147176--45147200	2	12.5	2	100	0	50	52	0	48	0	1.00
45147967--45148022	23	2.4	23	79	5	60	16	21	25	37	1.93
45148547--45148778	117	2.0	117	94	0	410	27	9	22	40	1.85
45152444--45152489	21	2.2	21	84	0	56	39	6	21	32	1.79
45153961--45154023	31	2.0	31	84	6	83	41	3	25	30	1.71
45154447--45154472	12	2.2	12	100	0	52	84	7	7	0	0.77
45155167--45155213	24	2.0	24	82	0	58	57	4	6	31	1.43
45161919--45161971	26	2.0	26	100	0	106	35	22	7	33	1.83
45164487--45164551	21	3.1	21	75	0	67	24	23	18	33	1.96
45164837--45164886	24	2.1	24	100	0	100	54	16	12	18	1.72
45166159--45166202	15	2.9	15	75	0	52	65	2	0	31	1.05
45172245--45172295	25	2.0	25	85	7	68	37	1	13	47	1.55
45174998--45175230	118	2.0	118	95	0	421	42	9	12	36	1.74
45187707--45187765	26	2.3	25	82	11	66	37	0	1	61	1.07
45191787--45191833	24	2.0	24	91	0	76	10	19	6	63	1.47
45197864--45197935	35	2.1	35	100	0	144	37	8	25	29	1.85
45204386--45204445	31	2.0	30	83	3	75	33	15	11	40	1.83
45213030--45213089	23	2.6	23	97	0	111	50	31	3	15	1.60
45213245--45213294	24	2.1	23	82	14	57	28	26	0	46	1.53
45221719--45221754	11	3.2	11	88	4	54	0	13	0	86	0.58
45223051--45223098	25	1.9	25	86	0	69	35	22	14	27	1.93
45223124--45223180	20	2.9	21	87	10	77	40	8	19	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45223229--45223327	26	3.8	26	87	2	146	27	22	23	27	1.99
45226201--45226300	51	1.9	52	83	2	130	31	12	29	28	1.92
45227618--45227788	44	3.7	44	73	11	144	29	18	20	31	1.96
45227472--45228116	145	4.5	146	72	8	496	32	17	19	30	1.95
45228169--45228373	89	2.3	88	82	0	239	27	16	26	29	1.96
45228169--45228381	44	4.8	44	81	1	228	29	15	25	29	1.96
45229295--45229328	5	6.4	5	96	3	50	0	0	17	82	0.67
45231039--45231086	19	2.5	19	96	0	87	22	20	12	43	1.86
45233560--45233691	64	2.1	64	97	0	246	53	11	18	17	1.73
45233667--45233753	5	17.8	5	85	13	103	82	0	16	1	0.72
45233670--45233753	7	11.6	7	73	22	68	82	0	16	1	0.74
45234960--45235798	132	6.4	128	81	5	817	29	18	25	27	1.98
45234972--45235798	260	3.2	258	87	5	1033	29	18	25	27	1.98
45253578--45253628	25	2.0	25	82	14	61	17	5	21	54	1.63
45254555--45254591	18	2.0	20	84	10	51	51	2	5	40	1.39
45254676--45254735	20	2.8	21	85	10	68	40	8	0	51	1.32
45259071--45259105	17	2.1	17	88	0	52	31	5	34	28	1.81
45264447--45264485	20	2.0	20	94	0	69	43	5	2	48	1.38
45267561--45267598	4	9.2	4	86	11	51	76	0	2	21	0.91
45271226--45271284	30	2.0	30	83	6	75	47	1	1	49	1.21
45272456--45272510	17	3.0	19	72	22	55	63	1	3	30	1.22
45272518--45272573	24	2.5	21	78	13	58	60	1	3	33	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45272619--45272681	22	2.9	21	76	4	63	60	4	6	28	1.42
45272613--45272707	44	2.1	44	83	9	113	62	3	4	30	1.30
45272696--45272745	19	2.7	19	81	12	59	62	0	4	34	1.14
45274338--45274519	83	2.2	82	84	4	233	29	18	17	34	1.94
45274447--45274791	118	2.9	119	93	2	572	33	19	14	32	1.92
45286162--45286196	17	2.0	18	88	5	54	60	8	11	20	1.57
45286348--45286401	24	2.2	24	83	6	65	61	1	9	27	1.37
45289565--45289602	20	2.0	20	85	10	53	44	31	2	21	1.66
45291244--45291287	22	2.0	22	95	0	79	61	0	6	31	1.22
45295227--45295603	131	2.9	130	85	2	504	26	19	19	34	1.96
45302839--45303161	176	1.8	176	85	3	448	39	18	17	24	1.91
45316696--45316753	27	2.1	27	81	12	66	60	1	6	31	1.33
45319152--45319327	46	3.8	46	79	14	209	20	20	29	29	1.98
45319149--45319320	93	1.8	93	95	2	310	20	20	29	28	1.98
45323160--45323226	28	2.4	28	80	7	82	65	1	4	28	1.21
45324750--45324909	52	3.1	51	82	8	196	25	15	26	31	1.96
45330004--45330136	66	2.0	66	94	0	230	36	6	6	51	1.51
45349672--45349790	55	2.2	55	84	6	152	22	23	28	25	1.99
45351789--45351827	19	2.1	19	100	0	78	30	0	15	53	1.42
45355249--45355387	64	2.2	63	81	3	163	25	23	21	30	1.99
45357867--45357920	20	2.6	21	82	11	67	35	0	7	57	1.27
45357910--45357948	11	3.5	11	85	0	60	25	2	2	69	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45358346--45358378	10	3.1	11	86	8	50	54	0	33	12	1.37
45360142--45360254	23	4.8	23	73	12	104	15	29	23	32	1.94
45362926--45362966	3	13.7	3	100	0	82	34	0	0	65	0.93
45364652--45364703	16	3.3	16	74	15	63	55	1	25	17	1.52
45366367--45366427	21	2.9	20	75	7	59	57	0	4	37	1.20
45370787--45370839	26	2.0	26	82	7	63	75	3	7	13	1.15
45371110--45371203	3	31.7	3	79	10	95	67	0	5	27	1.12
45391711--45391771	22	2.8	22	80	9	63	36	14	21	27	1.93
45391632--45391782	69	2.2	69	80	2	187	36	17	21	25	1.94
45397421--45397459	4	9.8	4	94	0	69	53	23	0	23	1.46
45398708--45398758	26	2.0	26	88	0	75	49	5	1	43	1.38
45399388--45399545	84	1.9	85	80	9	189	49	5	1	43	1.35
45401808--45401848	21	2.0	21	100	0	82	14	26	4	53	1.61
45406833--45407011	46	3.9	47	76	9	179	22	21	26	28	1.99
45406833--45407002	93	1.8	93	87	2	252	23	22	26	27	1.99
45408500--45408593	33	2.8	33	80	1	116	21	25	14	38	1.92
45414002--45414470	116	4.1	116	99	0	922	38	11	10	39	1.76
45415052--45415103	23	2.3	23	86	6	70	36	9	13	40	1.77
45415206--45415417	110	1.9	113	87	4	313	28	36	0	34	1.58
45415289--45415551	131	2.0	127	80	10	293	29	34	0	36	1.58
45427962--45428008	26	1.9	26	83	12	64	14	12	4	68	1.36
45429172--45429218	22	2.1	22	81	14	53	44	2	2	51	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45448016--45448066	26	2.0	26	84	0	66	60	3	0	35	1.15
45469405--45469903	249	2.0	249	98	0	971	38	12	14	33	1.84
45477647--45477696	9	5.6	9	85	0	73	48	16	8	28	1.74
45483072--45483111	19	2.2	18	86	4	53	85	10	0	5	0.75
45484761--45484825	29	2.2	29	86	8	87	49	3	0	47	1.17
45501351--45501380	3	10.0	3	100	0	60	33	0	0	66	0.92
45501981--45502178	105	1.9	105	93	0	342	29	20	19	30	1.97
45512701--45512736	1	36.0	1	100	0	72	100	0	0	0	0.00
45513638--45515115	44	33.4	45	74	8	881	27	16	26	29	1.97
45514208--45515126	132	7.0	132	98	0	1768	27	15	26	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172