genome.fa.s10.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  89  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29869170--29869252	43	1.9	43	90	0	130	36	25	10	27	1.89
29878255--29878410	43	3.6	43	82	7	174	32	26	17	23	1.97
29878255--29878410	42	3.6	42	77	12	147	32	26	17	23	1.97
29883014--29883170	43	3.7	43	74	7	140	26	17	26	29	1.98
29887590--29887700	58	1.9	58	83	1	143	27	30	15	26	1.96
29887599--29887700	29	3.6	29	85	4	118	28	30	15	25	1.96
29893430--29893618	94	2.0	94	100	0	378	28	16	16	38	1.91
29895942--29896098	43	3.7	43	74	10	133	26	17	25	30	1.97
29900830--29901013	40	4.7	39	81	9	187	24	22	27	25	2.00
29900830--29901007	79	2.3	79	81	8	202	24	23	28	23	2.00
29900882--29901036	79	2.0	79	81	7	181	25	21	27	25	1.99
29907622--29907752	56	2.3	56	98	1	253	47	17	15	19	1.83
29914903--29914971	20	3.5	20	66	4	59	65	5	15	13	1.45
29916486--29916590	27	3.9	27	82	9	117	20	23	20	35	1.96
29919862--29920017	43	3.6	43	75	11	140	29	26	18	25	1.98
29921438--29921539	37	2.8	37	92	0	159	27	29	17	25	1.98
29921662--29922736	96	11.3	96	98	0	2009	30	27	8	33	1.86
29925984--29926012	15	2.0	15	93	6	51	48	20	6	24	1.74
29926009--29926033	13	1.9	13	100	0	50	76	16	0	8	1.02
29926743--29926855	43	2.6	42	82	8	113	29	23	19	28	1.98
29926785--29926895	44	2.6	43	83	7	127	32	27	17	23	1.96
29932378--29932442	32	2.0	32	93	0	112	35	21	9	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29933355--29933456	42	2.4	43	79	9	111	33	25	14	26	1.95
29933336--29933498	43	3.8	43	76	9	145	32	28	15	23	1.95
29945105--29945165	30	2.0	30	90	0	95	29	24	8	37	1.84
29951077--29951259	92	2.0	92	92	2	305	34	18	11	35	1.86
29954053--29954099	24	2.0	24	91	0	76	34	29	12	23	1.92
29954063--29954125	24	2.6	24	89	0	90	31	34	14	19	1.91
29961525--29961571	24	2.0	24	91	0	76	34	29	12	23	1.92
29961535--29961597	24	2.6	24	89	0	90	31	34	14	19	1.91
29973577--29973609	6	5.5	6	92	0	57	21	0	0	78	0.75
29986124--29986195	36	2.0	36	97	0	135	26	33	12	27	1.92
29989714--29989790	39	2.0	39	97	2	147	29	12	31	25	1.93
29990023--29990234	27	7.9	27	79	13	215	34	20	25	19	1.96
29990041--29990234	107	1.8	108	89	3	311	35	21	24	18	1.96
29990065--29990234	54	3.2	54	97	0	315	35	22	24	17	1.95
29991853--29991908	26	2.2	26	93	6	96	37	23	7	32	1.82
29996155--29996189	5	6.6	5	87	12	52	80	2	0	17	0.84
29997854--29997914	21	3.0	21	75	18	65	65	3	1	29	1.18
30001809--30001835	14	1.9	14	100	0	54	74	7	3	14	1.18
30006588--30006646	13	4.7	12	76	17	57	49	6	1	42	1.39
30011337--30011387	23	2.2	23	82	6	59	39	13	17	29	1.88
30011395--30011458	21	3.0	21	73	8	65	31	23	20	25	1.98
30011370--30011535	44	3.8	44	85	2	217	30	18	24	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30011343--30011535	23	8.7	21	72	10	116	31	17	23	27	1.97
30011517--30011580	23	2.9	23	75	13	62	45	14	15	25	1.83
30024648--30024710	22	2.9	22	83	2	83	12	38	25	23	1.90
30028680--30028824	54	2.7	54	89	3	211	19	24	21	35	1.96
30028686--30028842	27	5.8	27	78	12	153	20	24	20	35	1.96
30029807--30029836	16	1.9	16	93	6	53	60	10	3	26	1.45
30036555--30036779	40	5.7	40	86	5	296	24	22	28	25	2.00
30036555--30036802	119	2.1	119	81	7	281	25	21	27	25	1.99
30039450--30039594	54	2.7	54	92	3	229	19	24	21	34	1.96
30039456--30039594	27	5.1	27	82	9	167	19	24	21	34	1.96
30039456--30039612	27	5.8	27	80	12	162	20	24	20	34	1.96
30039456--30039612	81	1.9	81	82	7	194	20	24	20	34	1.96
30044316--30044367	16	3.1	16	69	15	50	46	25	5	23	1.74
30044300--30044372	35	2.1	35	86	0	110	45	23	8	23	1.79
30049188--30049321	38	3.5	38	83	0	169	35	14	19	30	1.92
30050476--30050538	32	2.0	32	90	0	99	36	15	12	34	1.86
30051284--30051355	31	2.5	30	84	8	87	26	11	9	52	1.67
30051451--30051493	23	1.9	22	85	4	59	30	6	2	60	1.35
30061154--30061227	17	4.6	16	83	11	82	85	0	12	2	0.71
30061156--30061227	8	8.6	8	79	11	74	84	0	12	2	0.72
30061154--30061219	6	11.7	6	78	13	61	84	0	12	3	0.72
30062459--30062546	44	2.0	44	95	0	158	28	17	18	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30062254--30062751	249	2.0	249	99	0	987	28	18	20	32	1.96
30062503--30063177	205	3.3	205	89	1	1050	30	17	21	30	1.96
30063247--30063410	86	1.9	86	81	8	199	34	18	21	26	1.96
30063812--30063845	17	2.0	17	100	0	68	41	5	11	41	1.66
30071753--30071831	10	8.0	10	78	17	69	63	0	3	32	1.12
30071761--30071842	15	5.2	16	70	20	59	63	1	3	31	1.19
30071779--30071842	24	2.9	22	79	15	78	65	1	1	31	1.11
30071753--30071841	20	4.4	19	75	18	74	62	1	3	32	1.19
30071780--30071852	15	5.0	15	72	21	57	64	1	4	30	1.20
30071779--30071858	24	3.6	23	76	15	69	62	2	3	31	1.26
30071905--30071958	22	2.4	23	78	3	65	62	3	5	27	1.34
30071993--30072054	12	5.2	12	75	12	58	59	0	4	35	1.19
30071960--30072092	7	20.0	7	64	20	54	57	1	3	37	1.23
30073642--30073758	44	2.7	44	90	0	189	27	26	13	32	1.94
30073733--30074164	222	2.0	218	89	1	657	27	23	17	32	1.96
30082671--30083109	241	1.8	241	93	0	770	33	18	19	28	1.96
30083141--30083704	283	2.0	283	95	0	1022	37	18	13	30	1.90
30086228--30086332	54	1.9	54	100	0	210	29	15	20	35	1.93
30087846--30088245	100	4.0	100	98	0	766	31	19	14	34	1.92
30089045--30089101	21	2.8	20	82	15	64	24	1	3	70	1.13
30089056--30089101	20	2.4	19	82	13	58	23	0	2	73	0.94
30092059--30092341	18	15.3	18	75	10	167	36	15	12	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30092059--30092341	36	7.6	36	72	12	196	36	15	12	35	1.85
30092050--30092341	54	5.3	54	74	10	230	37	15	11	35	1.84
30092140--30092341	72	2.8	70	80	6	219	37	15	11	35	1.85
30092527--30092715	45	4.2	45	90	0	279	39	20	21	19	1.93
30093111--30093160	15	3.2	16	75	13	52	38	22	0	40	1.54
30094114--30094315	39	5.1	39	65	11	142	35	17	4	42	1.70
30094048--30094368	79	4.1	79	98	0	615	34	18	4	42	1.69
30094621--30094663	14	3.1	14	86	3	61	16	11	0	72	1.13
30094656--30094731	23	3.5	22	71	21	79	35	3	2	57	1.31
30094673--30094705	16	2.1	16	88	11	50	27	3	6	63	1.32
30094657--30094738	42	2.0	42	97	0	155	35	4	2	57	1.33
30094681--30094752	23	3.3	23	71	21	66	33	4	2	59	1.31
30097764--30097816	5	10.4	5	82	10	54	15	1	0	83	0.74
30097755--30097821	16	4.2	15	78	12	71	14	1	1	82	0.82
30097754--30097821	27	2.5	26	79	16	75	16	1	1	80	0.85
30097769--30097821	8	6.2	8	87	10	70	15	1	0	83	0.74
30097755--30097857	30	3.4	30	75	10	93	18	2	1	76	1.00
30097785--30097836	21	2.5	20	81	6	59	17	1	0	80	0.80
30098420--30098474	25	2.2	25	93	3	92	21	18	7	52	1.69
30104637--30104673	18	1.9	19	89	10	58	13	5	16	64	1.45
30104841--30104892	28	1.9	26	84	7	68	53	3	17	25	1.60
30113401--30113553	43	3.6	43	72	11	136	26	17	26	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30124006--30124040	18	1.9	18	88	0	52	34	25	8	31	1.86
30131250--30131306	20	2.8	20	94	0	96	36	12	19	31	1.89
30131356--30131438	24	3.4	24	90	6	123	28	20	22	27	1.99
30131355--30131450	49	1.9	50	85	10	135	27	22	22	27	1.99
30137211--30137240	15	2.0	15	100	0	60	40	6	26	26	1.81
30140450--30140491	20	2.0	21	86	13	61	14	9	42	33	1.78
30141624--30141731	26	4.2	26	91	0	180	33	7	23	36	1.83
30150346--30150389	22	2.0	22	83	12	56	56	6	6	29	1.51
30150504--30150578	14	4.9	15	70	23	59	57	2	8	32	1.42
30150595--30150793	8	25.1	8	67	18	80	59	1	5	34	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172