genome.fa.s10.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  160  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52448242--52448305	31	2.1	30	82	8	76	21	1	6	70	1.18
52452089--52452138	18	2.6	20	87	6	68	34	2	4	60	1.27
52452204--52452249	20	2.2	21	84	7	58	32	6	2	58	1.36
52452211--52452249	20	2.0	20	89	0	60	35	5	2	56	1.35
52452210--52452257	19	2.6	18	81	15	53	31	4	6	58	1.42
52457506--52457553	11	4.4	11	78	0	51	18	12	6	62	1.50
52457951--52458325	194	1.9	192	85	3	520	41	14	11	33	1.81
52458671--52458721	22	2.5	20	76	17	52	50	5	1	41	1.37
52460499--52460557	4	14.8	4	96	0	91	25	5	49	20	1.69
52469071--52469144	31	2.4	31	84	8	89	28	6	0	64	1.18
52469092--52469154	21	3.1	21	80	6	60	28	6	0	65	1.17
52469083--52469155	18	3.8	18	75	16	67	30	6	0	63	1.21
52469112--52469162	18	2.8	18	77	14	59	25	9	0	64	1.24
52475587--52475628	18	2.3	18	88	8	59	54	0	0	45	0.99
52477692--52477740	25	1.9	26	91	4	82	40	26	6	26	1.79
52483290--52483314	5	5.0	5	100	0	50	0	0	80	20	0.72
52484650--52484691	16	2.6	17	85	11	61	19	0	26	54	1.44
52484650--52484693	15	2.8	15	80	19	54	22	0	25	52	1.48
52484681--52484885	96	2.1	98	82	8	251	39	1	17	41	1.58
52484861--52484890	15	2.0	15	93	0	51	16	0	36	46	1.47
52484973--52485511	126	4.3	126	92	0	882	34	18	20	26	1.96
52488538--52488717	55	3.2	55	72	20	197	47	7	3	41	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52488526--52488792	116	2.3	116	99	0	525	47	8	4	40	1.52
52489175--52489217	18	2.4	18	92	0	68	44	11	27	16	1.82
52489278--52489336	30	2.0	30	83	6	75	6	16	45	30	1.74
52489662--52489688	7	3.9	7	100	0	54	59	14	0	25	1.36
52489654--52489687	14	2.4	14	90	0	50	64	8	0	26	1.22
52490466--52491233	384	2.0	384	98	0	1500	36	17	13	32	1.89
52491234--52491284	20	2.5	20	87	6	66	39	0	31	29	1.57
52491234--52491291	11	5.5	10	80	15	64	39	0	29	31	1.57
52491234--52491297	31	2.1	31	88	5	94	40	0	28	31	1.57
52514082--52514135	29	1.9	27	85	7	72	22	16	18	42	1.89
52514940--52514982	18	2.6	16	78	10	50	2	13	2	81	0.89
52514940--52514982	17	2.5	18	81	7	54	2	13	2	81	0.89
52516100--52516150	15	3.5	15	69	15	52	60	7	0	31	1.25
52522330--52522369	21	1.9	21	85	10	55	25	7	17	50	1.72
52525409--52525464	29	2.0	28	90	10	89	7	42	14	35	1.73
52527517--52527624	45	2.5	43	82	8	130	58	7	6	27	1.50
52527870--52527923	23	2.4	23	81	9	67	59	1	7	31	1.36
52534658--52534691	3	11.3	3	100	0	68	64	0	0	35	0.94
52544791--52544830	19	2.2	18	86	8	55	52	0	0	47	1.00
52546082--52546133	9	5.4	9	78	13	59	32	0	5	61	1.20
52546082--52546132	19	2.6	19	90	3	75	31	0	5	62	1.19
52546929--52546957	5	6.0	5	96	4	51	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52549022--52549063	20	2.1	20	86	0	57	45	2	2	50	1.27
52554968--52555189	3	74.7	3	68	18	94	30	3	4	61	1.31
52555190--52555238	19	2.5	20	86	3	64	34	0	6	59	1.22
52555206--52555239	17	2.0	17	88	0	50	41	0	2	55	1.15
52555358--52555401	23	1.9	23	85	0	61	29	9	4	56	1.50
52562554--52562592	20	2.0	20	85	10	53	33	7	25	33	1.84
52562700--52562786	43	2.0	43	88	4	131	24	21	11	42	1.86
52562710--52562778	21	3.2	21	65	25	54	21	18	10	49	1.77
52564791--52564815	7	3.6	7	100	0	50	44	0	0	56	0.99
52568592--52568633	22	1.9	22	90	0	66	38	0	4	57	1.20
52569581--52569619	20	2.0	20	100	0	78	30	5	2	61	1.31
52569582--52569630	20	2.5	20	90	3	73	32	4	2	61	1.26
52575255--52575358	27	3.9	27	86	9	124	20	23	22	34	1.97
52575877--52575924	19	2.5	19	93	0	78	41	10	12	35	1.77
52576310--52576446	51	2.7	51	79	0	175	40	13	6	39	1.71
52580379--52580428	25	2.0	25	100	0	100	12	24	12	52	1.72
52599464--52599496	14	2.3	15	94	5	59	0	0	9	90	0.44
52600185--52600214	13	2.2	14	94	5	53	53	0	0	46	1.00
52603904--52604011	26	4.2	26	93	0	189	36	24	7	32	1.83
52609463--52609515	26	2.0	27	85	7	74	24	15	22	37	1.92
52610999--52611134	26	5.2	26	93	1	211	35	25	5	33	1.78
52614819--52614863	9	4.8	9	78	10	54	28	0	2	68	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52614827--52614872	21	2.2	20	84	3	56	28	4	2	65	1.23
52619274--52619315	20	2.1	20	86	0	57	40	11	23	23	1.88
52635560--52635604	23	1.9	24	86	13	67	42	6	11	40	1.67
52635594--52635646	13	4.1	13	76	9	54	43	5	11	39	1.64
52635597--52635659	26	2.4	26	84	5	83	41	3	14	41	1.61
52638735--52638804	29	2.4	29	80	0	77	22	18	17	41	1.90
52645796--52645825	13	2.4	13	94	5	53	33	6	3	56	1.42
52660351--52660464	47	2.4	47	81	10	135	52	2	14	29	1.56
52660547--52660605	9	6.9	9	73	9	52	59	1	10	28	1.40
52660750--52660776	3	9.0	3	100	0	54	66	0	0	33	0.92
52661209--52661277	25	2.7	26	80	8	79	60	1	7	30	1.32
52662651--52663283	86	7.3	87	83	4	737	19	23	22	34	1.97
52662823--52663283	44	10.6	43	68	15	234	19	23	22	34	1.96
52662657--52663283	174	3.6	173	86	2	807	19	23	22	34	1.97
52662651--52663275	260	2.4	261	85	3	809	20	23	22	34	1.97
52675492--52675550	9	6.9	9	73	9	52	59	1	10	28	1.40
52675695--52675721	3	9.0	3	100	0	54	66	0	0	33	0.92
52676154--52676222	25	2.7	26	80	8	79	60	1	7	30	1.32
52680170--52680246	39	2.0	39	97	0	145	33	15	9	41	1.79
52683668--52683730	31	2.0	31	100	0	126	22	15	3	58	1.51
52685014--52685224	108	2.0	108	99	0	413	27	19	18	34	1.95
52706209--52706252	23	1.9	23	86	9	63	25	45	6	22	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52707184--52707213	15	1.9	16	93	6	53	53	0	26	20	1.46
52707263--52707379	58	2.0	56	83	8	146	50	5	2	41	1.40
52713786--52713826	16	2.6	16	96	0	73	29	14	9	46	1.77
52713862--52713896	6	5.5	6	87	12	52	14	20	0	65	1.26
52719855--52719909	23	2.3	25	76	20	64	38	1	3	56	1.28
52720621--52720677	26	2.2	26	90	0	87	43	19	10	26	1.83
52723108--52723139	16	2.0	16	100	0	64	43	18	18	18	1.88
52729720--52729759	18	2.2	19	95	4	73	47	12	20	20	1.81
52730766--52730822	19	3.0	19	77	12	55	54	0	1	43	1.10
52730784--52730820	18	2.1	18	89	0	56	54	0	0	45	1.00
52731105--52731195	10	9.4	10	71	15	57	29	5	2	62	1.29
52731142--52731184	18	2.3	18	88	4	59	20	4	2	72	1.14
52731906--52731947	21	2.0	21	90	0	66	21	16	26	35	1.94
52732264--52732535	136	2.0	136	99	0	535	40	16	22	19	1.91
52734246--52734286	18	2.3	18	91	4	57	41	14	0	43	1.45
52735650--52735785	56	2.4	56	92	0	227	31	25	16	27	1.96
52737105--52737170	19	3.3	19	72	12	60	48	10	0	40	1.38
52737091--52737174	41	2.1	39	93	4	141	55	8	0	35	1.30
52739465--52739503	17	2.2	19	86	9	55	43	0	0	56	0.99
52741172--52741214	15	2.8	15	86	10	52	62	4	4	27	1.35
52743901--52743930	13	2.2	14	94	5	53	43	0	0	56	0.99
52743908--52743948	14	3.0	14	86	10	50	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52746672--52746713	21	2.0	21	86	9	59	2	4	16	76	1.07
52753716--52753755	19	2.1	19	100	0	80	22	15	10	52	1.71
52756619--52756671	17	3.2	17	71	15	56	37	3	11	47	1.58
52756604--52756671	33	2.1	33	91	0	109	41	2	10	45	1.53
52760068--52760122	22	2.5	24	80	11	64	52	3	0	43	1.18
52760097--52760315	116	1.9	117	96	0	404	48	8	11	31	1.69
52760110--52760349	116	2.1	114	84	4	302	49	9	11	30	1.70
52760423--52760461	3	13.0	3	94	0	69	64	0	2	33	1.08
52760556--52760611	3	18.3	3	82	10	69	62	1	0	35	1.06
52760611--52760711	31	3.2	31	67	8	87	62	5	10	20	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172