genome.fa.s10.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  104  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34929645--34929689	19	2.4	19	80	0	54	53	0	0	46	1.00
34944804--34944924	58	2.1	59	83	6	149	27	16	6	49	1.70
34949435--34949519	3	27.3	3	81	7	62	31	9	1	57	1.38
34949434--34949479	22	2.1	22	87	0	65	30	2	0	67	1.03
34951796--34951841	24	2.0	23	86	4	65	45	13	26	15	1.82
34952538--34952681	74	1.9	74	97	0	270	38	14	20	25	1.91
34956281--34956474	46	4.2	46	87	0	253	34	15	26	24	1.95
34956903--34957092	54	3.7	53	72	13	164	32	16	19	31	1.94
34956932--34957121	98	1.9	97	90	1	299	33	18	18	28	1.96
34957186--34957584	44	8.9	46	67	8	178	32	22	17	27	1.96
34957186--34957709	179	2.9	178	89	1	789	32	22	17	28	1.96
34959258--34959318	21	2.9	21	82	0	68	34	4	3	57	1.36
34961692--34961832	27	5.2	26	85	6	183	17	23	24	34	1.95
34961692--34961832	54	2.6	53	93	2	228	17	23	24	34	1.95
34964717--34964847	14	8.9	14	71	17	63	35	3	0	61	1.14
34964730--34964795	16	3.7	18	75	20	50	36	1	0	62	1.05
34964731--34964845	30	3.8	30	77	11	112	35	3	0	60	1.13
34964730--34964845	3	39.0	3	69	22	59	35	3	0	61	1.13
34964728--34964796	20	3.5	20	71	18	63	36	1	0	62	1.04
34964728--34964849	20	5.9	20	65	26	60	35	3	0	61	1.12
34965237--34965286	17	3.2	17	72	18	54	32	2	0	66	1.03
34969521--34969553	13	2.5	13	100	0	66	30	27	30	12	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34982468--34982544	40	1.9	40	97	0	145	37	23	5	33	1.77
34987201--34987830	206	3.1	207	90	0	978	30	18	23	27	1.98
34989508--34989638	14	8.9	14	71	17	63	35	3	0	61	1.14
34989521--34989586	16	3.7	18	75	20	50	36	1	0	62	1.05
34989522--34989636	30	3.8	30	77	11	112	35	3	0	60	1.13
34989521--34989636	3	39.0	3	69	22	59	35	3	0	61	1.13
34989519--34989587	20	3.5	20	71	18	63	36	1	0	62	1.04
34989519--34989640	20	5.9	20	65	26	60	35	3	0	61	1.12
34989655--34989712	22	2.6	21	73	10	53	31	8	0	60	1.27
34989549--34989699	20	7.3	20	64	17	51	31	5	1	60	1.29
34990028--34990069	15	2.9	15	75	3	50	35	2	0	61	1.09
34994657--34994712	21	2.5	23	77	8	62	48	3	1	46	1.30
34995670--34995724	20	2.6	21	74	5	58	30	30	14	23	1.94
34995851--34995892	21	2.0	21	90	0	66	19	16	26	38	1.92
34997163--34997197	18	2.0	18	88	5	54	48	11	8	31	1.69
34997801--34997849	19	2.6	19	87	3	73	40	0	4	55	1.19
34999435--34999464	15	2.0	15	93	0	51	30	0	0	70	0.88
34999971--35000033	29	2.1	30	82	2	74	39	1	9	49	1.45
35000357--35000387	11	2.8	11	90	0	53	32	0	0	67	0.91
35000492--35000534	22	2.0	22	90	0	68	58	9	6	25	1.54
35008099--35008129	15	2.1	15	100	0	62	38	6	32	22	1.80
35008286--35008324	18	2.3	17	86	8	53	38	5	12	43	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35009066--35009095	15	2.0	15	93	0	51	23	6	46	23	1.75
35012457--35012487	15	2.1	15	100	0	62	38	6	32	22	1.80
35012644--35012682	18	2.3	17	86	8	53	38	5	12	43	1.65
35014827--35014898	38	1.9	37	85	2	99	47	5	1	45	1.34
35017958--35018007	26	1.9	25	84	15	66	38	4	26	32	1.75
35018511--35018621	42	2.6	41	80	8	118	31	15	24	28	1.95
35020594--35020624	14	2.2	14	94	0	53	9	29	3	58	1.46
35021332--35021356	8	3.1	8	100	0	50	76	0	0	24	0.80
35021329--35021397	29	2.3	31	80	9	81	60	4	0	34	1.16
35021610--35021668	30	1.9	31	86	3	84	27	18	3	50	1.62
35021610--35021678	30	2.3	31	82	7	79	27	17	5	49	1.69
35024093--35024354	136	1.9	136	93	0	452	39	14	14	30	1.87
35025440--35025492	24	2.2	24	86	0	70	47	9	3	39	1.54
35026101--35026143	15	2.6	17	75	24	56	53	0	0	46	1.00
35026101--35026150	17	3.1	16	78	21	59	54	0	2	44	1.11
35026045--35026513	154	3.1	147	81	9	509	43	5	7	43	1.56
35027124--35027214	47	1.9	47	100	0	182	24	17	25	32	1.97
35029725--35029781	20	2.8	20	79	12	55	10	10	1	77	1.07
35029843--35029897	21	2.5	22	82	8	60	36	3	1	58	1.26
35029843--35029897	22	2.6	21	82	8	58	36	3	1	58	1.26
35029856--35029978	31	3.8	33	74	16	96	37	2	1	58	1.21
35029934--35029994	21	2.6	24	76	19	67	37	0	3	59	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35029963--35029992	14	2.1	14	93	0	51	33	0	3	63	1.11
35030210--35030268	22	2.7	23	75	19	72	62	3	0	33	1.12
35030331--35030440	21	5.1	21	75	16	91	57	0	0	40	1.11
35030333--35030440	22	5.0	22	74	17	91	58	0	0	39	1.11
35030357--35030403	19	2.5	19	93	3	78	63	0	0	36	0.94
35030334--35030440	41	2.4	45	83	11	125	57	0	0	40	1.11
35030373--35030447	23	3.3	23	72	3	73	56	1	0	42	1.08
35030482--35030526	23	1.9	23	86	4	63	71	4	8	15	1.28
35032674--35032726	14	3.8	14	70	9	54	32	5	5	56	1.46
35032916--35032960	18	2.6	16	86	6	54	57	4	2	35	1.31
35035152--35035191	18	2.2	19	86	8	57	20	45	22	12	1.84
35038580--35038692	59	1.9	59	89	3	174	33	20	20	25	1.97
35041310--35041675	91	4.0	91	98	0	696	31	15	15	37	1.89
35045102--35045207	55	1.9	55	90	0	167	41	8	11	38	1.71
35050333--35050400	26	2.7	26	88	2	102	42	19	1	36	1.60
35054255--35054333	24	3.3	24	76	15	83	31	15	27	25	1.95
35055175--35055237	28	2.2	28	88	0	90	31	31	6	30	1.83
35055385--35055479	27	3.4	27	65	21	68	20	24	3	52	1.60
35055382--35055499	58	2.0	58	96	0	218	22	23	3	50	1.64
35055398--35055491	31	3.2	31	64	22	83	22	21	3	53	1.60
35060439--35060606	40	4.2	40	83	4	115	25	26	23	24	2.00
35060462--35060606	40	3.6	40	85	4	193	23	25	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35061795--35061870	38	2.0	38	100	0	152	31	23	13	31	1.93
35063753--35063796	18	2.2	20	84	11	56	38	0	4	56	1.20
35063761--35063802	18	2.3	18	80	8	50	35	0	2	61	1.09
35070126--35070182	25	2.3	27	79	14	68	38	3	0	57	1.16
35070834--35070896	31	2.0	31	93	0	108	36	12	19	31	1.89
35075324--35075484	49	3.4	49	80	4	179	26	29	18	24	1.98
35075461--35075587	46	2.7	46	81	2	146	24	31	17	26	1.97
35084335--35084383	18	2.7	18	84	6	55	34	8	4	53	1.50
35093673--35093731	29	2.1	28	83	3	73	55	10	0	33	1.33
35096978--35097080	41	2.5	40	80	7	109	31	18	25	25	1.98
35097193--35097250	24	2.3	25	94	5	100	22	3	17	56	1.55
35111621--35111726	53	2.0	53	92	0	176	16	8	21	53	1.69
35113739--35113826	30	2.9	30	86	0	113	17	25	30	27	1.97
35119177--35119226	23	2.2	22	85	3	64	72	2	20	6	1.16
35125881--35125914	15	2.3	15	94	0	59	11	8	17	61	1.54
35125861--35125935	15	5.0	15	74	6	53	13	17	14	54	1.71
35128397--35128572	46	3.8	46	78	12	180	21	21	28	28	1.99
35128393--35128563	93	1.8	93	91	0	279	22	21	28	27	1.99
35130915--35131040	46	2.7	46	81	6	137	27	20	27	23	1.99
35133406--35133453	23	2.2	21	82	14	53	29	2	22	45	1.64
35135657--35135739	42	2.0	42	95	0	148	14	20	28	36	1.92
35136432--35136502	35	2.0	35	94	0	124	33	9	19	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35140214--35140387	49	3.6	49	76	9	144	24	27	19	28	1.99
35140309--35140476	92	1.8	91	80	10	198	25	27	19	28	1.98
35142687--35142730	23	1.9	23	81	9	54	54	9	4	31	1.52
35144220--35144276	25	2.3	25	100	0	114	36	3	0	59	1.14
35145440--35145478	9	4.3	9	80	0	51	30	10	10	48	1.70
35145440--35145478	18	2.2	18	90	0	60	30	10	10	48	1.70
35146243--35146562	126	2.4	130	84	7	407	40	13	14	31	1.85
35149622--35149908	139	2.1	140	82	5	350	40	5	11	42	1.64
35149790--35149824	18	1.9	18	94	0	61	68	0	2	28	1.04
35151018--35151072	29	2.0	28	82	7	67	47	1	0	50	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172