genome.fa.s10.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  50  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16265852--16265943	38	2.4	38	90	0	139	21	20	25	32	1.98
16274794--16274961	46	3.6	44	78	9	183	30	19	27	22	1.98
16278264--16278416	42	3.6	41	80	8	146	25	20	27	26	1.99
16278264--16278423	43	3.8	41	80	9	144	25	21	27	26	1.99
16280778--16280837	22	2.7	22	85	10	70	53	1	0	45	1.10
16285620--16285717	48	2.0	48	94	0	169	56	19	8	16	1.65
16286538--16286571	5	6.8	5	86	0	50	79	0	5	14	0.91
16287002--16287085	39	2.1	39	91	6	132	52	5	14	27	1.64
16292736--16292850	44	2.6	45	84	2	142	36	13	21	27	1.92
16300113--16300227	44	2.6	44	85	2	149	35	13	22	27	1.92
16300113--16300246	46	3.0	45	82	4	153	35	14	23	26	1.93
16306483--16306560	39	2.0	39	97	0	147	23	7	19	50	1.73
16306499--16306574	39	2.1	37	83	11	95	25	5	17	52	1.65
16320537--16320610	35	2.1	35	97	0	139	43	20	18	17	1.88
16320572--16320725	54	2.8	53	82	7	184	45	18	22	14	1.85
16321661--16321786	64	2.0	64	91	0	207	29	15	15	38	1.89
16321851--16323009	180	6.5	180	89	1	1606	29	17	24	28	1.97
16323280--16323359	40	2.0	40	92	0	133	43	25	6	25	1.77
16323776--16323865	45	2.0	44	93	2	153	8	17	3	68	1.29
16326266--16326324	25	2.5	24	81	13	68	38	11	5	44	1.63
16327199--16327237	20	1.9	21	85	15	55	43	2	0	53	1.14
16327257--16327305	14	3.4	14	85	5	62	51	0	4	44	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16327267--16327335	32	2.1	33	84	15	90	52	0	4	43	1.21
16328620--16328665	23	2.0	24	86	4	67	39	28	17	15	1.90
16328916--16328945	14	2.1	14	93	0	51	30	20	6	43	1.77
16331988--16332142	27	5.7	27	93	3	238	27	12	29	30	1.93
16331988--16332142	55	2.8	55	93	0	247	27	12	29	30	1.93
16334419--16334590	94	1.8	94	82	0	218	36	18	22	23	1.95
16334407--16334626	94	2.3	93	75	6	217	33	18	25	23	1.97
16337017--16337124	36	2.9	37	93	2	182	27	29	19	23	1.98
16337333--16337716	47	8.2	47	91	0	588	25	29	13	31	1.93
16337445--16337522	23	3.2	25	63	17	65	30	32	10	26	1.90
16337423--16337497	22	3.3	22	65	17	62	26	32	13	28	1.94
16354728--16354773	23	2.0	23	84	12	60	45	10	6	36	1.65
16354735--16354779	23	2.0	23	82	8	56	40	13	8	37	1.76
16359937--16359961	11	2.3	11	100	0	50	72	0	0	28	0.86
16360233--16360300	30	2.3	29	82	10	75	29	19	4	47	1.69
16361228--16361254	14	1.9	14	100	0	54	48	14	7	29	1.71
16362054--16362095	21	2.0	21	81	9	50	66	2	0	30	1.04
16365798--16365892	39	2.4	39	89	0	136	44	20	4	31	1.70
16369287--16369412	28	4.5	28	85	1	155	25	16	24	33	1.96
16369287--16369396	56	2.0	56	90	0	175	23	17	25	33	1.96
16369453--16369488	18	2.0	18	88	0	54	44	25	5	25	1.75
16371889--16371945	22	2.6	22	82	0	78	21	35	29	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16377425--16377520	40	2.4	40	85	0	129	35	8	6	50	1.58
16377425--16377531	40	2.7	40	82	2	108	32	7	7	52	1.58
16383158--16383252	47	2.0	47	97	0	181	26	24	18	30	1.98
16383955--16384130	88	2.0	88	96	0	325	29	13	10	46	1.76
16386364--16386532	93	1.8	93	98	0	329	29	29	20	20	1.98
16386357--16386578	46	4.8	46	78	12	249	30	29	19	20	1.97
16387749--16387865	59	2.0	59	98	0	225	48	14	1	35	1.54
16395609--16395865	46	5.6	46	89	0	354	41	12	23	22	1.88
16395701--16395771	21	3.2	21	66	21	54	39	7	26	26	1.82
16395607--16395865	138	1.9	138	89	1	403	41	12	23	22	1.88
16397601--16397647	16	2.8	17	77	6	51	40	2	4	53	1.32
16398141--16398217	31	2.5	31	83	10	88	37	10	2	49	1.51
16400642--16400708	4	16.8	4	100	0	134	25	0	23	50	1.49
16406069--16406169	39	2.6	39	91	0	157	36	22	26	13	1.92
16406067--16406171	18	5.5	18	68	16	68	35	24	25	14	1.93
16411214--16411299	34	2.5	34	88	0	127	33	31	12	22	1.91
16416722--16416771	24	2.1	24	96	0	91	14	26	30	30	1.94
16440576--16440714	65	2.1	66	90	4	228	35	14	24	25	1.93
16448499--16448532	3	11.3	3	100	0	68	35	0	32	32	1.58
16449604--16449656	18	3.0	17	79	15	63	37	1	0	60	1.08
16462924--16463073	43	3.5	43	75	12	146	27	14	24	34	1.94
16464816--16464857	18	2.4	18	88	4	59	19	0	26	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16465946--16465996	22	2.3	22	93	3	84	29	17	9	43	1.81
16473646--16473674	14	2.1	14	100	0	58	20	0	20	58	1.39
16477776--16478107	66	5.0	66	96	0	592	36	13	5	44	1.67
16485554--16485593	19	2.1	19	95	0	71	35	10	12	42	1.76
16489561--16489706	40	3.7	40	88	5	190	31	26	21	21	1.98
16497564--16497680	40	3.0	38	82	7	117	30	25	20	23	1.98
16497587--16497719	40	3.3	40	88	3	180	29	24	21	24	1.99
16506959--16507187	40	5.7	40	93	0	377	31	20	26	21	1.98
16512421--16512499	37	2.1	37	88	0	113	26	31	17	24	1.97
16512618--16513003	47	8.1	47	91	2	592	28	30	9	31	1.89
16512629--16513003	194	1.9	192	93	1	651	28	30	10	30	1.90
16517952--16518014	30	2.1	30	93	0	108	22	3	17	57	1.54
16518137--16518172	11	3.2	11	92	4	54	66	0	2	30	1.06
16520078--16520112	16	2.2	16	100	0	70	20	20	34	25	1.96
16522325--16522549	40	5.6	40	86	6	294	26	26	22	24	2.00
16522325--16522549	83	2.8	81	86	7	316	26	26	22	24	2.00
16524684--16524716	13	2.6	13	90	4	50	36	0	9	54	1.32
16528795--16528866	27	2.7	26	80	4	72	26	27	11	34	1.90
16538700--16539100	201	2.0	200	99	0	793	34	13	23	27	1.93
16540032--16540201	40	4.3	40	84	3	200	23	21	30	25	1.99
16540054--16540236	79	2.3	80	80	1	199	25	20	29	24	1.99
16543939--16544027	30	3.0	30	84	0	124	37	22	15	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16551275--16551348	18	4.1	18	76	0	58	37	12	10	39	1.78
16551324--16551381	26	2.2	26	84	6	73	36	15	13	34	1.87
16551350--16551401	18	2.9	18	79	0	59	46	13	11	28	1.78
16551705--16551737	6	5.5	6	92	0	57	45	15	21	18	1.85
16556083--16556462	126	3.0	126	97	0	706	33	11	16	38	1.85
16563589--16563777	49	3.8	49	86	2	279	28	26	20	25	1.99
16563583--16563782	100	2.0	100	100	0	400	28	26	21	25	1.99
16564032--16564085	27	2.0	27	85	0	72	38	14	7	38	1.75
16564383--16564439	30	1.9	30	88	0	87	31	19	7	42	1.78
16565427--16565487	30	2.0	30	87	3	86	32	24	4	37	1.77
16569941--16570063	62	2.0	61	100	0	237	27	30	16	24	1.96
16572225--16572262	19	2.0	20	85	15	53	39	23	0	36	1.55
16572492--16572662	93	1.8	93	89	0	270	29	27	20	22	1.98
16572487--16572659	46	3.7	46	76	10	181	30	26	20	22	1.98
16572537--16572678	46	3.1	45	73	18	123	29	28	19	23	1.98
16579510--16580147	46	13.7	46	71	16	444	22	19	27	30	1.98
16579552--16579672	48	2.5	49	88	4	176	24	19	26	28	1.99
16579507--16580147	139	4.6	139	89	4	925	22	19	27	29	1.98
16580372--16580409	19	2.0	20	85	15	53	36	0	23	39	1.55
16586922--16586958	15	2.5	15	95	0	65	37	13	32	16	1.87
16587011--16587067	27	2.1	27	87	6	80	31	14	17	36	1.89
16593846--16593915	25	2.8	25	86	0	95	27	25	24	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16598560--16598589	15	1.9	16	93	6	53	20	20	6	53	1.67
16599641--16599710	29	2.4	28	81	9	79	21	27	32	18	1.97
16603818--16603897	40	2.0	40	97	0	151	12	12	16	58	1.63
16611911--16612002	40	2.3	39	80	9	105	28	18	26	27	1.98
16616152--16616224	29	2.5	29	75	14	78	24	8	4	63	1.40
16617661--16617766	53	2.0	53	92	0	176	30	14	17	37	1.90
16625209--16625257	25	2.0	25	83	0	62	34	22	14	28	1.93
16629669--16629757	27	3.3	27	78	6	99	29	17	23	29	1.97
16632261--16632300	15	2.7	15	92	3	64	52	17	15	15	1.75
16640109--16640200	46	2.0	45	97	2	175	43	19	10	26	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172