genome.fa.s10.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  96  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32415789--32416146	54	6.6	54	77	6	287	39	21	8	30	1.84
32415803--32416061	81	3.2	81	87	2	335	42	20	8	28	1.81
32415735--32416118	54	7.1	53	78	8	185	39	20	8	32	1.82
32416073--32416124	27	1.9	27	88	7	79	38	13	13	34	1.84
32416178--32416265	27	3.3	27	88	3	115	36	20	25	18	1.95
32417070--32417244	26	6.8	26	86	0	228	28	21	21	28	1.99
32417070--32417250	52	3.5	52	87	7	264	29	20	20	28	1.98
32417389--32417480	42	2.2	42	92	0	148	29	14	21	34	1.93
32417504--32417582	31	2.5	31	97	0	149	29	18	25	26	1.98
32423733--32423806	38	2.0	37	82	12	89	33	2	20	43	1.66
32427192--32427233	22	1.9	22	95	0	75	14	19	21	45	1.85
32429371--32429834	27	17.2	27	85	4	587	27	22	9	40	1.85
32429839--32430006	27	6.2	27	85	2	194	35	17	19	26	1.94
32429847--32430005	81	2.0	81	85	0	219	35	17	20	26	1.94
32430206--32430288	27	3.1	26	82	5	94	20	21	19	38	1.93
32430376--32430434	22	2.7	22	81	0	64	20	25	22	32	1.98
32430599--32430672	27	2.8	26	81	6	76	17	24	22	35	1.95
32430790--32430981	6	31.8	6	75	16	175	19	16	14	48	1.80
32430790--32430981	30	6.4	30	89	5	289	19	16	14	48	1.80
32433001--32433070	30	2.3	30	85	0	95	22	30	15	31	1.95
32433064--32433137	30	2.5	31	80	8	91	18	20	10	50	1.77
32433064--32433127	29	2.1	31	85	5	87	15	23	10	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32446088--32446117	3	10.0	3	100	0	60	0	33	33	33	1.58
32446062--32446298	24	9.5	24	72	12	158	11	31	27	29	1.91
32446063--32446300	27	9.4	27	74	14	168	10	31	27	30	1.91
32446063--32446298	51	4.7	50	77	9	214	11	31	27	30	1.91
32446064--32446292	78	3.1	76	78	11	224	11	31	27	30	1.91
32461862--32461901	19	2.1	19	100	0	80	37	20	5	37	1.74
32463772--32463809	19	2.0	19	100	0	76	47	26	10	15	1.78
32476554--32476651	49	2.0	49	95	0	178	39	24	10	25	1.86
32488572--32488627	20	2.8	20	80	0	58	39	14	19	26	1.90
32492177--32492354	27	6.6	27	83	3	178	30	28	14	26	1.95
32492198--32492353	82	1.9	81	86	3	224	30	28	14	26	1.95
32496063--32496137	29	2.6	29	91	2	114	30	9	24	36	1.87
32496053--32496253	29	6.9	29	72	8	99	25	11	22	39	1.89
32497505--32497541	18	2.1	18	100	0	74	56	5	0	37	1.22
32500268--32500309	20	2.2	20	84	12	54	19	7	4	69	1.31
32500302--32500355	13	4.2	13	82	0	63	29	3	1	64	1.21
32505593--32505632	20	2.0	20	90	0	62	20	20	15	45	1.86
32507393--32507420	11	2.5	11	100	0	56	7	28	0	64	1.20
32514305--32514458	42	3.6	42	79	6	168	31	16	24	27	1.96
32519062--32519570	254	2.0	254	99	0	1009	42	26	5	26	1.76
32521067--32521114	20	2.3	20	78	3	51	25	8	2	64	1.32
32524896--32524929	17	2.0	17	94	0	59	17	2	11	67	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32525876--32525939	28	2.3	27	80	17	69	31	4	28	35	1.78
32525883--32525939	28	2.0	28	83	12	73	33	5	28	33	1.79
32531072--32531202	27	4.9	27	88	0	190	29	20	8	41	1.82
32531126--32531508	27	14.1	27	77	10	190	39	19	8	32	1.82
32531106--32531266	54	3.0	54	82	1	162	35	21	8	34	1.83
32531080--32531228	81	1.8	81	80	0	181	32	18	8	40	1.82
32531180--32531456	81	3.4	80	80	7	301	40	20	8	29	1.82
32531194--32531427	54	4.4	52	81	7	254	42	20	7	29	1.80
32531153--32531508	54	6.6	54	77	7	238	40	19	8	31	1.82
32531570--32531657	27	3.3	27	87	3	115	35	19	26	19	1.95
32532461--32532557	26	3.8	26	94	1	162	25	23	23	26	2.00
32532461--32532557	51	1.9	51	93	4	169	25	23	23	26	2.00
32532702--32532793	42	2.2	42	88	0	130	29	14	21	34	1.93
32532817--32532976	31	5.3	31	70	17	147	33	19	21	25	1.97
32532817--32533018	60	3.4	60	97	0	370	33	19	21	25	1.97
32532847--32533005	29	5.3	29	71	11	142	35	20	20	23	1.96
32535534--32535750	79	2.7	78	81	7	249	25	27	21	24	1.99
32535536--32535757	40	5.6	40	84	6	249	25	27	22	24	2.00
32537802--32537982	43	4.2	43	72	8	129	28	20	22	28	1.99
32537802--32537982	85	2.1	85	80	9	190	28	20	22	28	1.99
32540441--32540503	30	2.1	29	82	11	74	39	0	3	57	1.15
32544063--32544114	18	2.9	18	91	0	86	34	11	13	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32544539--32544802	72	3.7	72	88	2	372	26	4	13	55	1.58
32547819--32547929	42	2.6	43	92	2	188	30	32	27	9	1.89
32547922--32548005	38	2.2	38	89	0	123	33	26	19	21	1.97
32554977--32555063	41	2.2	40	93	2	147	64	12	4	18	1.44
32557722--32558104	109	3.5	109	92	1	597	31	21	19	27	1.98
32558143--32558227	40	2.1	40	95	0	152	41	27	16	15	1.88
32561449--32561475	13	2.1	13	100	0	54	14	29	29	25	1.95
32574622--32574728	20	5.3	20	72	2	81	34	19	32	13	1.90
32574622--32574728	40	2.7	40	82	0	124	34	19	32	13	1.90
32574665--32574743	40	2.0	40	89	0	122	35	18	31	13	1.91
32575479--32575516	20	1.9	20	88	0	58	23	7	2	65	1.32
32577619--32577686	21	3.3	21	72	4	66	27	20	33	17	1.95
32577616--32577721	41	2.6	41	87	1	151	32	19	29	18	1.96
32583890--32583975	36	2.2	36	84	10	100	52	2	3	41	1.31
32584113--32584155	19	2.4	17	84	7	50	41	2	4	51	1.35
32584113--32584158	17	2.5	19	86	6	60	41	2	6	50	1.40
32595205--32595252	21	2.2	21	78	10	53	47	2	12	37	1.53
32599640--32599750	23	4.7	23	83	10	136	34	17	23	25	1.96
32599648--32599750	24	4.5	22	83	12	127	34	17	22	25	1.95
32601230--32601491	48	5.5	48	73	11	193	26	30	17	25	1.98
32601378--32601491	46	2.4	48	85	2	151	22	30	19	27	1.98
32607170--32607209	6	6.5	6	82	5	53	77	0	5	17	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32607180--32607211	13	2.4	14	85	15	50	75	0	6	18	1.01
32618411--32618625	46	4.6	47	81	4	220	25	28	18	27	1.98
32618411--32618625	94	2.3	93	82	3	270	25	28	18	27	1.98
32620944--32621070	39	3.3	39	86	1	175	22	24	20	32	1.98
32628948--32629076	39	3.3	39	87	1	188	21	26	20	31	1.98
32629523--32629631	55	2.0	55	94	0	191	40	15	9	34	1.79
32630709--32630777	35	2.0	35	97	0	129	31	28	4	34	1.77
32630744--32630952	105	2.0	105	98	0	400	38	18	12	30	1.88
32646012--32646149	24	5.9	24	80	10	119	33	16	21	28	1.95
32654135--32654168	16	2.1	17	88	5	52	5	0	17	76	0.98
32661538--32661577	21	2.0	20	95	5	71	12	40	30	17	1.86
32664111--32664350	68	3.7	64	75	8	180	28	17	29	24	1.97
32666480--32666715	40	5.9	41	80	11	145	32	22	15	29	1.95
32666522--32666715	40	4.8	38	82	10	192	32	21	16	28	1.95
32666529--32666715	80	2.3	80	87	2	250	32	21	16	29	1.95
32669134--32669174	15	2.6	16	84	11	57	24	0	7	68	1.15
32672762--32672812	17	3.2	17	68	21	56	31	19	9	39	1.84
32672760--32672819	30	2.0	30	96	0	111	30	21	11	36	1.89
32676615--32676879	93	2.8	93	96	0	476	28	27	21	23	1.99
32676608--32676875	46	5.8	45	80	11	310	29	26	20	23	1.99
32681671--32681737	32	2.1	32	94	0	116	47	16	16	19	1.82
32684627--32684844	47	4.7	46	82	8	230	26	20	30	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32684627--32684844	94	2.4	91	84	6	262	26	20	30	22	1.99
32685769--32685818	20	2.5	20	83	0	73	20	34	32	14	1.92
32689259--32689431	46	3.7	46	75	13	174	21	20	27	30	1.98
32689256--32689426	93	1.8	93	91	0	279	21	21	28	29	1.98
32691317--32691356	19	2.1	19	86	9	55	40	12	7	40	1.71
32698989--32699028	19	2.1	19	90	0	62	42	12	7	37	1.71
32702196--32702238	14	3.0	13	83	16	50	0	23	2	74	0.93
32704787--32704867	26	3.1	26	90	0	117	33	37	12	17	1.87
32705886--32705949	33	2.0	32	84	9	85	28	25	25	21	1.99
32713296--32713320	2	12.5	2	100	0	50	48	0	52	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172