genome.fa.s10.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  149  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48843951--48843985	15	2.4	15	90	4	54	68	0	5	25	1.11
48845527--48846337	143	5.7	143	87	0	1077	27	22	19	30	1.98
48845684--48846049	44	7.8	45	66	11	153	28	23	18	29	1.98
48853041--48853092	19	2.7	20	88	5	72	42	7	21	28	1.80
48855719--48855889	3	57.7	3	82	8	181	63	0	5	30	1.18
48856175--48856204	15	2.0	15	93	0	51	50	0	10	40	1.36
48858251--48858280	13	2.4	12	94	5	51	60	3	6	30	1.39
48858644--48858692	26	2.0	24	84	8	62	59	2	6	32	1.34
48860795--48860850	14	3.8	15	78	21	57	30	1	3	64	1.21
48860799--48860851	13	3.6	14	79	16	54	28	1	3	66	1.20
48860809--48860877	13	4.9	14	75	19	63	31	2	2	62	1.25
48867882--48867921	16	2.5	17	84	12	57	35	0	2	62	1.09
48867890--48867930	21	2.0	21	90	0	64	34	0	2	63	1.08
48867858--48867971	18	6.4	17	68	19	56	30	3	0	64	1.16
48867877--48867979	13	8.2	13	67	20	51	33	2	0	63	1.16
48867997--48868039	15	2.8	15	85	3	50	34	2	2	60	1.22
48870927--48870968	19	2.2	19	95	0	75	21	21	16	40	1.91
48874854--48875476	44	14.2	44	90	1	957	30	16	31	21	1.96
48880604--48880654	25	2.0	25	92	0	84	43	9	7	39	1.67
48881043--48881261	47	4.7	47	75	15	206	23	20	28	27	1.99
48881043--48881305	93	2.8	93	93	0	438	22	21	28	27	1.99
48881047--48881314	46	5.8	46	74	15	239	22	20	28	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48888669--48888698	15	2.0	15	93	0	51	50	0	10	40	1.36
48889646--48889675	12	2.5	12	88	0	51	16	6	6	70	1.31
48890097--48890135	20	2.0	20	90	10	62	15	0	10	74	1.07
48890402--48891224	133	6.2	133	90	1	1153	27	25	18	28	1.98
48897900--48897945	14	3.0	16	70	23	53	54	0	8	36	1.32
48899369--48899407	20	2.0	20	90	10	62	15	0	10	74	1.07
48901401--48901439	20	2.0	20	84	0	51	41	7	7	43	1.62
48903414--48903468	27	2.0	27	96	0	101	20	18	12	49	1.79
48904726--48904766	21	1.9	22	85	5	57	31	0	4	63	1.15
48916433--48916979	286	1.9	286	96	0	1015	45	16	13	24	1.83
48924887--48925130	55	4.6	53	78	7	194	36	17	23	22	1.94
48924894--48925094	108	1.8	110	88	4	309	34	16	24	23	1.95
48925333--48925363	16	1.9	16	93	0	53	41	0	22	35	1.54
48929623--48929664	15	2.9	15	96	3	77	40	0	11	47	1.40
48930229--48930270	15	2.9	15	96	3	77	40	0	11	47	1.40
48934995--48935040	23	2.0	23	84	12	60	45	10	6	36	1.65
48935002--48935046	23	2.0	23	82	8	56	40	13	8	37	1.76
48938180--48938222	18	2.4	18	80	0	50	27	6	16	48	1.71
48938163--48938221	27	2.2	27	87	0	82	28	6	16	47	1.72
48938298--48938358	29	2.1	29	84	3	79	42	8	13	36	1.74
48940779--48940824	23	2.0	23	82	4	56	58	4	4	32	1.37
48941827--48941902	37	2.1	37	97	0	143	32	18	11	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48942586--48942648	12	5.1	13	90	9	89	49	0	49	1	1.10
48942596--48942653	6	9.7	6	92	7	100	51	0	48	0	1.00
48942596--48942653	25	2.4	24	91	8	100	51	0	48	0	1.00
48942596--48942653	31	1.9	31	96	3	109	51	0	48	0	1.00
48950692--48950763	36	2.0	37	83	8	94	30	6	20	41	1.79
48957337--48957392	15	3.7	15	76	19	55	69	1	8	19	1.24
48960865--48960927	24	2.5	26	85	10	78	58	3	3	34	1.30
48961166--48961253	28	3.1	28	72	15	74	56	4	9	29	1.50
48966351--48966393	20	2.0	22	86	13	63	48	4	9	37	1.56
48968121--48968152	9	3.6	9	100	0	64	78	9	0	12	0.97
48971255--48972382	561	2.0	562	98	1	2177	31	15	25	27	1.96
48989218--48989465	38	6.5	38	99	0	487	30	20	25	23	1.99
48989435--48989555	46	2.6	46	86	2	163	41	16	23	19	1.90
48989816--48989862	25	2.0	25	83	8	62	53	4	14	27	1.60
48996012--48996076	28	2.3	27	75	12	69	50	3	7	38	1.47
48999690--48999731	20	2.1	20	86	0	57	54	4	7	33	1.49
49000428--49000475	23	2.1	23	84	7	62	18	25	20	35	1.95
49000388--49000518	25	5.2	24	69	18	63	19	21	23	35	1.95
49000522--49000632	25	4.5	24	68	14	66	21	24	18	35	1.96
49004209--49004262	19	2.8	18	86	5	72	18	42	24	14	1.88
49010493--49010532	21	2.0	21	90	5	64	47	0	10	42	1.37
49011991--49012052	31	2.0	31	100	0	124	19	6	54	19	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49015046--49015100	18	3.1	18	80	17	69	41	0	32	25	1.56
49015046--49015098	9	5.9	9	76	8	54	43	0	32	24	1.55
49016093--49016147	18	3.1	18	80	17	69	41	0	32	25	1.56
49016093--49016145	9	5.9	9	76	8	54	43	0	32	24	1.55
49017036--49017077	21	2.0	21	100	0	84	61	9	4	23	1.45
49017349--49017397	25	2.0	25	84	8	64	42	2	0	55	1.11
49018621--49018659	18	2.2	18	85	0	51	17	5	7	69	1.32
49018608--49018656	19	2.6	19	77	9	55	20	4	6	69	1.27
49020308--49020359	18	2.8	18	85	2	68	44	7	5	42	1.57
49020518--49020567	25	2.0	25	92	0	82	48	2	0	50	1.12
49030732--49030779	15	3.0	16	79	17	55	0	52	0	47	1.00
49039597--49039633	19	1.9	19	89	10	58	56	5	8	29	1.51
49040417--49040460	16	2.8	16	79	6	54	13	6	15	63	1.49
49040682--49040798	30	3.9	30	76	7	105	46	3	20	29	1.67
49040697--49040798	30	3.4	30	83	2	134	46	3	20	29	1.69
49040682--49040798	60	2.0	59	83	5	146	46	3	20	29	1.67
49040795--49040840	24	1.9	24	95	0	83	26	0	2	71	0.97
49041027--49041311	80	3.7	75	77	8	272	35	17	15	30	1.91
49041220--49041541	87	3.7	87	87	4	438	36	20	16	25	1.94
49041524--49041562	20	2.0	20	100	0	78	33	30	10	25	1.89
49041219--49041553	172	1.9	175	83	4	435	36	21	16	25	1.94
49041574--49041603	14	2.1	14	93	0	51	66	3	6	23	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49041441--49041648	107	2.0	103	85	5	283	36	22	13	27	1.92
49046180--49046257	39	2.0	39	94	0	138	46	5	20	28	1.72
49047676--49047870	97	2.0	97	97	0	372	15	33	11	39	1.83
49047704--49047853	48	3.1	48	61	19	112	13	34	10	42	1.79
49053802--49053862	17	3.8	17	76	20	60	54	3	6	36	1.43
49053972--49054997	512	2.0	513	98	0	1982	34	26	11	27	1.91
49055131--49055174	16	2.6	17	86	13	65	18	6	13	61	1.54
49054713--49056086	691	2.0	685	97	1	2626	25	20	18	35	1.95
49055822--49055859	15	2.5	15	95	4	67	21	5	13	60	1.52
49055821--49055860	16	2.5	17	88	12	66	20	5	12	62	1.48
49056073--49056205	30	4.5	31	75	11	100	42	2	21	33	1.66
49056087--49056202	30	3.9	31	80	9	127	42	2	24	31	1.68
49056073--49056202	60	2.2	59	83	4	172	42	2	22	33	1.66
49056199--49056244	24	2.0	23	91	4	74	30	0	0	69	0.89
49057042--49057098	19	2.9	19	78	14	62	33	0	8	57	1.29
49057069--49057102	15	2.3	15	94	0	59	35	0	11	52	1.38
49057047--49057118	21	3.6	19	81	7	72	30	1	9	58	1.39
49057414--49057442	15	2.0	15	93	6	51	24	0	6	68	1.13
49059776--49059826	26	2.0	26	84	0	66	23	13	31	31	1.93
49064726--49064760	17	2.1	17	100	0	70	40	0	5	54	1.24
49064927--49064960	16	2.1	16	88	0	50	50	14	17	17	1.79
49067443--49067481	16	2.4	16	91	4	60	82	7	2	7	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49070764--49070806	16	2.7	16	96	0	77	65	16	6	11	1.46
49071343--49071376	16	2.2	16	89	5	52	50	8	11	29	1.69
49071368--49071397	11	2.7	11	100	0	60	83	0	0	16	0.65
49071369--49071405	12	3.2	12	92	3	58	81	0	0	18	0.70
49073956--49074005	24	2.1	24	88	7	75	22	22	12	44	1.85
49081245--49081403	84	1.9	85	93	1	275	31	15	16	35	1.91
49081161--49081475	158	2.0	157	90	1	490	32	16	16	35	1.91
49081093--49081749	72	8.7	74	82	8	625	31	16	17	33	1.93
49081093--49081749	302	2.2	296	82	8	781	31	16	17	33	1.93
49081318--49082612	79	16.2	79	71	16	453	30	17	18	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172