genome.fa.s10.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  78  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25794241--25794284	15	2.9	15	89	3	61	4	15	0	79	0.89
25794239--25794303	15	4.2	14	76	16	58	3	16	1	78	0.96
25794241--25794307	21	3.1	21	85	8	73	2	16	1	79	0.94
25796965--25797061	30	3.2	30	73	2	88	28	13	27	29	1.94
25798533--25798572	14	2.9	14	88	0	53	50	7	32	10	1.64
25805070--25805119	11	4.6	11	85	2	66	16	4	6	74	1.17
25805070--25805119	22	2.3	21	93	3	82	16	4	6	74	1.17
25807016--25807268	27	9.4	27	86	0	326	36	17	19	26	1.94
25808011--25808070	27	2.3	27	85	2	77	21	23	20	35	1.96
25807902--25808043	67	2.1	67	82	5	167	19	26	23	31	1.98
25815849--25816026	27	6.6	26	83	6	178	26	15	28	29	1.96
25815850--25816005	82	1.9	81	88	3	233	26	15	28	29	1.96
25815846--25816026	82	2.2	81	83	2	229	26	15	28	29	1.96
25820890--25821115	68	3.3	67	98	0	407	31	14	30	23	1.94
25820956--25821067	38	3.2	38	60	27	91	29	15	29	25	1.96
25820924--25821189	68	3.9	67	89	5	183	33	15	29	21	1.94
25821288--25821391	52	2.0	52	98	0	199	21	11	29	37	1.88
25824425--25824500	23	3.5	22	75	19	63	67	5	6	21	1.34
25824425--25824476	23	2.3	23	84	15	65	67	3	7	21	1.32
25829376--25829413	19	2.0	19	85	10	51	68	0	10	21	1.19
25830137--25830167	15	2.1	15	93	0	53	61	12	9	16	1.56
25833035--25833086	21	2.4	22	84	12	63	67	1	19	11	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25834002--25834135	67	2.0	67	98	0	259	28	12	23	35	1.92
25835023--25835075	26	2.1	25	85	3	70	33	9	15	41	1.79
25835818--25835866	11	4.5	11	75	14	57	44	18	20	16	1.86
25837949--25838151	96	2.1	96	85	3	266	41	17	19	21	1.90
25838084--25838220	69	2.0	69	86	2	195	42	18	19	19	1.90
25838158--25838319	81	2.0	82	86	3	229	40	17	19	21	1.91
25838341--25838673	81	3.9	81	71	15	244	41	21	18	19	1.91
25838193--25838894	177	3.9	177	88	4	933	40	20	17	21	1.91
25838625--25838894	96	2.8	96	87	2	373	40	20	17	22	1.91
25838625--25838943	96	3.3	95	80	5	367	40	20	16	21	1.91
25838598--25838943	192	1.8	192	83	5	466	39	20	18	21	1.92
25843464--25843497	15	2.3	15	100	0	68	58	14	11	14	1.63
25853393--25853429	17	2.2	17	95	0	65	0	18	0	81	0.70
25853393--25853449	16	3.5	16	80	7	53	1	15	5	77	1.03
25855599--25855811	107	2.0	107	98	0	408	47	23	12	17	1.81
25858176--25858220	21	2.1	22	84	12	58	66	8	11	13	1.44
25860682--25860813	40	3.3	40	87	3	178	25	19	27	28	1.99
25863762--25863811	22	2.3	23	86	6	68	52	0	0	48	1.00
25863782--25863816	17	2.1	17	89	5	54	42	0	0	57	0.99
25874169--25874357	102	1.8	101	88	5	290	38	17	15	28	1.91
25874269--25874600	87	3.7	90	80	8	324	35	18	16	28	1.93
25874423--25874455	14	2.4	14	94	0	57	63	6	12	18	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25874527--25875357	75	11.3	74	83	6	1017	33	19	16	31	1.94
25874558--25875423	148	5.8	148	86	4	1100	32	19	16	31	1.94
25874527--25875423	221	4.0	221	89	3	1165	33	19	16	30	1.94
25875526--25875570	13	3.4	13	84	6	63	68	4	11	15	1.34
25875348--25875614	100	2.7	99	89	2	385	39	20	17	22	1.92
25875587--25875645	31	1.9	31	96	0	109	27	35	16	20	1.94
25875657--25875701	13	3.4	13	84	6	63	68	4	11	15	1.34
25875484--25875801	131	2.4	129	88	6	435	37	20	16	25	1.94
25887813--25887867	25	2.3	23	81	12	67	45	3	16	34	1.65
25887955--25887996	22	1.9	22	85	0	57	64	4	2	28	1.26
25887958--25888050	29	3.3	27	76	7	98	59	4	4	32	1.37
25888624--25888689	30	2.2	30	94	0	114	18	6	50	25	1.70
25891461--25891548	31	2.9	30	81	5	104	50	7	3	38	1.49
25898295--25898468	94	1.9	94	84	4	235	37	8	24	29	1.84
25902056--25902103	11	4.3	11	89	5	69	41	18	18	20	1.90
25902056--25902103	23	2.1	22	88	3	69	41	18	18	20	1.90
25902067--25902111	22	2.0	23	82	4	56	46	20	15	17	1.84
25907447--25907601	43	3.6	43	91	3	258	30	32	25	11	1.91
25907617--25907716	37	2.7	38	93	1	175	28	23	25	24	2.00
25910710--25910896	50	3.8	49	83	7	207	25	18	28	28	1.98
25914100--25914277	90	2.0	90	83	2	223	29	25	16	27	1.97
25918300--25918541	48	5.0	48	89	4	380	34	6	27	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25918300--25918541	96	2.5	96	94	0	430	34	6	27	31	1.82
25920871--25920942	36	2.0	36	97	0	135	20	19	12	47	1.82
25932999--25933905	46	19.7	46	97	0	1636	37	16	24	21	1.94
25938661--25938711	17	3.1	17	77	5	52	68	3	19	7	1.30
25944463--25944598	51	2.7	51	77	0	155	39	6	12	41	1.69
25946321--25946606	96	3.0	96	93	0	464	34	17	34	13	1.88
25953606--25953653	25	1.9	25	82	0	60	29	20	18	31	1.97
25971000--25971088	44	2.0	44	93	0	151	21	20	20	38	1.94
25974694--25974957	40	6.6	39	83	4	298	25	21	27	25	2.00
25974694--25974957	79	3.3	80	89	4	367	25	21	27	25	2.00
25974694--25974957	119	2.2	121	84	6	344	25	21	27	25	2.00
25981923--25981998	38	2.0	38	94	0	134	25	11	32	30	1.91
25982330--25982429	50	2.0	50	96	0	182	21	28	16	35	1.94
25982541--25982652	56	2.0	56	91	3	181	34	23	19	22	1.96
25983387--25983482	49	2.0	49	93	0	165	43	16	14	25	1.86
25983560--25983738	40	4.5	39	88	3	209	22	27	24	25	2.00
25991589--25992109	40	13.0	40	98	0	938	25	27	24	22	2.00
25995961--25996018	26	2.2	26	93	0	98	34	5	24	36	1.78
25999451--25999487	17	2.0	20	85	15	53	37	43	10	8	1.69
26012317--26012476	83	1.9	83	85	0	221	34	18	18	28	1.95
26012311--26012648	184	1.8	184	93	1	588	33	19	18	28	1.96
26012495--26012712	83	2.6	83	91	1	348	32	19	20	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26013926--26014031	53	2.0	53	98	0	203	19	33	23	22	1.97
26026976--26027034	28	2.3	24	85	11	73	45	5	1	47	1.34
26026978--26027058	22	3.6	21	75	6	63	46	3	1	48	1.27
26027798--26027823	1	26.0	1	100	0	52	0	0	0	100	0.00
26029508--26029540	17	1.9	18	88	11	52	48	0	9	42	1.35
26030927--26030953	5	5.4	5	100	0	54	81	0	0	18	0.69
26031524--26031578	27	2.0	28	82	6	69	40	3	0	56	1.17
26049040--26049076	17	2.2	17	100	0	74	18	21	5	54	1.64
26052075--26052281	53	3.8	53	77	3	189	39	17	23	19	1.92
26058323--26058374	25	2.1	25	96	0	95	38	5	9	46	1.61
26059566--26059710	53	2.7	53	81	2	155	39	15	22	22	1.92
26065204--26065509	103	3.0	103	80	5	343	29	17	19	33	1.95
26066162--26066230	33	2.1	33	89	5	104	18	27	13	40	1.88
26067516--26067609	40	2.3	40	85	0	116	23	19	24	32	1.97
26070020--26070155	43	3.2	42	80	3	148	33	19	22	25	1.97
26081804--26081874	34	2.1	34	100	0	142	19	8	22	49	1.75
26088450--26088561	58	1.9	58	92	0	188	30	21	17	30	1.96
26095939--26096299	186	1.9	185	97	0	686	36	9	18	36	1.83
26097268--26097500	48	4.9	48	92	0	385	35	7	27	29	1.84
26097641--26097750	37	3.0	37	93	0	184	24	19	30	25	1.98
26103270--26103355	43	2.0	43	95	0	154	29	12	9	48	1.72
26109916--26110091	46	3.8	46	79	12	216	20	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26109913--26110084	93	1.8	93	96	0	317	20	21	29	27	1.98
26118673--26118848	46	3.8	46	76	12	198	21	20	28	29	1.98
26118670--26118841	93	1.8	93	93	0	299	21	20	29	28	1.98
26125515--26125571	30	1.9	30	82	3	71	17	22	40	19	1.91
26138719--26138896	27	6.6	27	84	3	205	29	28	15	26	1.96
26138740--26138895	82	1.9	81	88	3	233	29	28	15	26	1.96
26146943--26147110	47	3.6	47	79	7	171	23	29	17	29	1.97
26153137--26153617	102	4.7	102	97	0	890	23	30	13	32	1.93
26162093--26162574	151	3.2	146	81	8	499	42	4	10	42	1.60
26167341--26167598	46	5.5	47	76	11	178	29	18	29	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172