genome.fa.s10.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  79  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26167341--26167598	140	1.8	140	82	4	333	29	18	29	23	1.97
26173183--26173343	46	3.5	46	78	11	159	28	20	28	22	1.98
26176010--26176086	27	2.9	27	82	0	91	23	28	14	33	1.94
26181477--26181510	18	1.9	18	88	5	52	23	32	32	11	1.91
26181859--26181934	40	1.9	40	83	0	98	14	17	32	35	1.90
26187719--26187762	15	2.8	16	89	6	63	13	31	38	15	1.87
26194123--26194617	258	1.9	258	100	0	990	38	16	13	31	1.87
26196487--26196897	46	9.0	46	88	3	517	42	14	23	20	1.88
26196498--26196897	89	4.4	90	87	3	482	42	14	23	19	1.88
26196980--26197023	13	3.4	13	77	0	52	38	2	22	36	1.67
26197942--26198016	22	3.0	26	79	15	104	56	4	12	28	1.54
26198064--26198138	24	3.2	24	62	24	59	38	16	26	18	1.91
26198011--26198231	47	4.7	47	90	1	329	41	15	23	19	1.90
26198011--26198231	93	2.4	93	90	1	336	41	15	23	19	1.90
26198314--26198409	26	3.7	24	73	13	66	40	4	19	35	1.71
26199167--26199235	36	1.9	36	93	0	120	24	13	36	26	1.92
26203762--26203840	40	2.0	40	87	0	113	16	16	30	36	1.91
26208479--26208650	39	4.4	39	92	2	283	20	23	27	27	1.99
26216470--26216650	39	4.6	39	92	0	299	19	22	28	29	1.98
26228480--26228732	40	6.3	40	85	5	352	23	22	26	28	1.99
26233510--26233534	13	1.9	13	100	0	50	56	8	0	36	1.29
26233764--26233813	15	3.3	15	72	10	57	42	12	2	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26233752--26233813	30	2.1	30	96	0	115	43	12	3	40	1.59
26235133--26235248	31	3.8	31	89	1	171	23	25	17	34	1.96
26235455--26235563	26	4.3	26	90	5	138	23	22	24	28	2.00
26235441--26235563	26	4.9	24	88	6	131	24	22	25	27	2.00
26235696--26235743	25	1.9	25	86	0	69	29	12	22	35	1.91
26237809--26237956	43	3.5	42	71	11	115	31	26	15	27	1.96
26238479--26238508	15	2.0	15	93	0	51	56	16	0	26	1.40
26244042--26244206	46	3.6	45	76	11	154	30	20	26	23	1.98
26244178--26244377	49	4.2	49	67	12	130	30	20	24	25	1.99
26251591--26251615	12	2.1	12	100	0	50	48	16	8	28	1.74
26253267--26253483	72	3.0	72	99	0	425	35	11	17	35	1.86
26256917--26257068	57	2.6	58	77	6	157	27	19	21	32	1.97
26271101--26271125	13	1.9	13	100	0	50	88	0	0	12	0.53
26278190--26278273	19	4.3	20	75	15	68	21	8	2	67	1.28
26278185--26278264	40	2.0	40	80	9	92	22	10	1	66	1.29
26287423--26287595	46	3.7	46	77	13	192	22	20	27	29	1.99
26287420--26287590	93	1.8	93	93	0	297	22	21	28	28	1.99
26295014--26295182	46	3.7	46	76	13	193	23	20	27	28	1.99
26295007--26295177	93	1.8	93	93	0	297	22	21	27	28	1.99
26305801--26305884	26	3.3	26	61	15	66	27	19	25	28	1.98
26305701--26305989	50	5.7	50	80	5	269	25	17	26	30	1.97
26305703--26306023	150	2.1	152	82	2	378	25	17	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26307963--26308125	68	2.4	68	82	8	179	22	23	20	33	1.97
26309934--26309976	22	2.0	22	95	4	79	46	2	9	41	1.48
26313583--26313620	15	2.5	15	100	0	76	18	23	18	39	1.92
26316558--26316637	20	3.9	20	73	15	65	28	2	3	65	1.23
26316603--26316644	20	2.0	21	90	4	68	40	0	4	54	1.21
26316603--26316643	21	2.0	21	90	0	64	41	0	4	53	1.22
26316613--26316654	19	2.3	19	87	4	59	42	0	2	54	1.13
26316606--26316654	19	2.5	20	80	12	57	42	0	4	53	1.20
26316644--26316721	20	4.1	19	79	17	65	37	1	5	56	1.30
26316658--26316721	20	3.3	19	78	8	67	35	1	4	57	1.29
26318301--26318339	19	2.2	17	86	9	51	56	2	0	41	1.13
26318300--26318349	18	2.6	19	75	12	57	60	2	0	38	1.09
26319053--26319087	17	2.1	17	94	0	61	42	11	25	20	1.85
26321146--26321257	46	2.4	46	90	0	170	30	25	25	19	1.98
26321180--26321391	94	2.3	93	82	3	237	29	20	26	23	1.99
26323733--26324755	40	25.6	40	97	0	1836	27	27	20	24	1.99
26326138--26326333	100	2.0	100	83	4	252	30	23	12	32	1.92
26331390--26331503	59	1.9	58	96	0	201	25	26	18	28	1.98
26332605--26332787	40	4.6	39	82	4	188	26	27	21	25	1.99
26332719--26332796	40	1.9	41	82	10	97	26	28	21	23	1.99
26333719--26333895	89	2.0	89	98	0	345	22	16	14	46	1.84
26334658--26334758	37	2.7	37	86	3	141	30	19	26	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26334791--26335072	48	5.9	48	88	1	415	32	15	22	29	1.95
26346034--26346060	12	2.2	12	100	0	54	33	18	7	40	1.78
26356307--26356364	29	2.0	29	100	0	116	44	0	27	27	1.54
26363058--26363176	23	5.0	23	74	10	87	22	23	18	35	1.96
26364901--26364925	13	1.9	13	100	0	50	64	16	4	16	1.44
26386483--26386581	52	1.9	50	86	8	137	30	13	16	40	1.86
26393264--26393311	18	2.5	19	83	10	62	43	14	10	31	1.79
26393264--26393330	19	3.5	19	73	18	59	41	17	8	31	1.81
26396416--26396470	25	2.2	26	78	15	62	50	1	7	40	1.40
26397312--26397399	45	2.0	45	86	0	122	23	14	27	34	1.94
26397312--26397462	45	3.5	42	75	13	112	27	15	25	31	1.96
26405764--26405888	45	2.8	45	82	2	162	23	16	28	32	1.95
26405777--26405969	45	4.4	45	74	8	145	25	19	26	27	1.99
26408552--26408703	42	3.6	42	76	4	137	29	26	15	28	1.96
26408566--26408661	41	2.3	42	82	10	108	25	26	17	31	1.97
26410352--26410513	42	3.9	42	83	4	184	27	13	27	31	1.94
26413513--26413569	20	2.8	20	81	0	69	17	14	36	31	1.89
26414333--26414569	43	5.6	43	90	2	370	15	32	36	16	1.90
26414333--26414570	85	2.8	85	89	3	363	15	31	36	16	1.90
26418327--26418488	43	3.8	43	88	0	245	27	31	18	22	1.97
26425573--26425748	27	6.5	27	83	3	183	30	27	14	27	1.95
26427403--26427478	24	3.0	24	62	23	57	21	14	30	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26433642--26433819	27	6.6	27	82	3	187	29	26	15	28	1.96
26433663--26433818	82	1.9	81	85	3	215	29	26	15	28	1.96
26437523--26437610	45	2.0	45	88	0	131	25	13	23	37	1.92
26442236--26442292	30	1.9	29	89	3	87	10	15	17	56	1.67
26447893--26447927	18	1.9	18	100	0	70	34	5	8	51	1.56
26448916--26448974	25	2.3	26	82	2	75	37	5	0	57	1.21
26450868--26451031	46	3.5	46	78	10	165	27	18	29	23	1.98
26463096--26463138	21	2.0	21	100	0	86	18	32	9	39	1.83
26465403--26465447	23	2.0	23	86	4	65	40	0	2	57	1.11
26483852--26483885	10	3.3	10	84	8	50	85	0	2	11	0.71
26485788--26485964	49	3.6	49	78	6	203	29	24	19	25	1.98
26485783--26485969	100	1.9	100	91	0	311	29	24	20	26	1.99
26488415--26488479	15	4.4	15	78	16	73	63	13	13	9	1.53
26488415--26488483	30	2.3	31	83	14	92	60	17	13	8	1.56
26491465--26491639	49	3.5	49	77	6	208	27	25	21	26	1.99
26491458--26491644	100	1.9	100	94	0	329	27	24	21	26	2.00
26493869--26494046	27	6.6	27	84	3	205	29	28	15	26	1.96
26493890--26494045	82	1.9	81	88	3	233	29	28	15	26	1.96
26506162--26506266	39	2.7	39	85	2	131	21	22	29	25	1.99
26510108--26510150	18	2.4	19	81	18	56	60	2	27	9	1.40
26510586--26510610	8	3.1	8	100	0	50	48	12	0	40	1.40
26529513--26529666	28	5.5	28	92	1	238	33	27	12	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26536604--26536750	75	2.0	75	95	0	267	27	19	14	37	1.92
26536992--26537127	69	2.0	69	97	0	254	46	19	11	22	1.81
26537817--26537884	27	2.5	27	92	2	109	30	27	14	26	1.95
26543444--26543525	41	2.0	41	95	0	146	7	34	17	41	1.77
26544360--26544454	49	1.9	49	97	0	181	32	27	16	23	1.96
26544875--26545026	76	2.0	76	94	0	268	26	21	24	26	1.99
26558445--26558475	16	1.9	16	93	0	53	35	16	6	41	1.74
26558627--26558783	43	3.7	43	79	6	176	28	26	19	25	1.98
26567139--26567530	40	9.8	40	88	1	579	25	25	21	26	2.00
26567370--26567476	23	5.2	23	58	25	58	23	27	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172