genome.fa.s10.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  114  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38146082--38146197	15	7.9	14	69	18	58	56	3	2	37	1.30
38146178--38146227	21	2.5	20	81	9	59	56	6	2	36	1.36
38146154--38146227	37	1.9	39	84	10	100	54	5	2	37	1.38
38146219--38146263	15	2.9	16	78	18	51	57	2	2	37	1.23
38146710--38146765	29	1.9	29	100	0	112	14	23	14	48	1.80
38148019--38148373	77	4.6	77	99	0	694	27	21	19	31	1.97
38148460--38148494	14	2.5	14	100	0	70	57	5	20	17	1.60
38148812--38148859	14	3.5	14	85	5	71	60	6	12	20	1.54
38148994--38149028	15	2.2	16	90	5	54	68	5	11	14	1.37
38148300--38149474	87	13.0	91	82	9	1112	36	19	16	27	1.93
38149088--38149122	15	2.2	16	90	5	54	68	5	11	14	1.37
38148917--38149456	188	2.9	188	96	2	968	37	18	14	29	1.91
38149182--38149216	15	2.2	16	90	5	54	68	5	11	14	1.37
38149276--38149310	15	2.2	16	90	5	54	68	5	11	14	1.37
38149368--38149397	14	2.1	14	93	0	51	66	6	10	16	1.41
38149377--38149771	77	5.2	77	93	0	643	33	20	16	28	1.95
38149293--38149771	154	3.1	154	88	5	671	34	20	16	28	1.94
38158572--38158620	19	2.4	21	80	16	59	0	26	6	67	1.14
38158581--38158619	15	2.6	15	95	0	69	0	23	5	71	1.05
38161805--38161860	21	2.7	21	81	10	69	57	5	1	35	1.32
38161925--38161960	14	2.5	15	90	4	56	52	0	5	41	1.24
38161941--38161990	21	2.5	20	81	9	59	56	6	2	36	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38161917--38161990	37	1.9	39	84	10	100	54	5	2	37	1.38
38163810--38163852	18	2.5	17	85	7	59	46	0	2	51	1.13
38179767--38179792	6	4.3	6	100	0	52	15	0	0	84	0.62
38181719--38181757	18	2.2	18	85	0	51	61	2	23	12	1.43
38199445--38199469	10	2.5	10	100	0	50	40	0	0	60	0.97
38202044--38202070	12	2.2	12	100	0	54	0	7	0	92	0.38
38202571--38202595	7	3.6	7	100	0	50	88	0	0	12	0.53
38208469--38208530	29	2.2	29	94	2	108	43	38	1	16	1.57
38211785--38211816	5	6.6	5	92	7	57	18	0	0	81	0.70
38211785--38211815	9	3.3	9	91	8	53	19	0	0	80	0.71
38216222--38216255	9	3.7	9	92	7	59	23	0	0	76	0.79
38218859--38218923	19	3.2	20	69	10	51	75	6	7	10	1.19
38234690--38234820	53	2.5	51	83	8	158	41	6	28	24	1.79
38234916--38235002	33	2.7	33	80	5	106	32	6	45	14	1.72
38238999--38239067	28	2.6	26	80	8	84	50	10	14	24	1.73
38240433--38240480	18	2.7	18	83	3	62	16	37	27	18	1.92
38242380--38242423	20	2.2	20	91	0	70	31	4	9	54	1.52
38242488--38242790	76	4.0	76	89	0	466	44	10	5	39	1.63
38243553--38243660	56	1.9	55	92	1	180	38	8	12	40	1.72
38248741--38248777	15	2.4	16	82	13	51	78	8	0	13	0.96
38251110--38251216	33	3.3	33	77	12	105	30	2	42	23	1.68
38251359--38251503	51	2.8	51	88	4	220	29	8	26	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38253092--38253138	23	2.0	23	100	0	94	48	17	12	21	1.79
38259372--38259435	16	3.9	16	80	11	76	28	6	26	39	1.80
38259463--38259490	10	2.8	10	100	0	56	28	0	32	39	1.57
38263641--38263800	71	2.3	71	87	0	221	30	17	23	29	1.97
38268565--38268618	6	8.5	6	80	11	63	77	3	1	16	1.00
38270131--38270196	34	2.0	33	82	8	80	66	1	6	25	1.23
38270181--38270215	8	4.4	8	92	0	61	74	0	2	22	0.95
38275148--38275364	46	4.7	46	84	1	220	20	19	13	46	1.83
38275148--38275325	46	3.9	46	86	0	223	18	19	14	47	1.83
38275153--38275364	91	2.3	92	82	0	255	19	19	13	47	1.82
38277168--38277223	11	5.2	11	78	4	60	64	1	0	33	1.04
38281345--38281386	21	2.0	21	81	9	50	64	7	0	28	1.20
38287665--38287808	39	3.7	39	92	0	243	27	28	23	20	1.99
38294028--38294165	71	1.9	71	98	0	267	31	16	20	31	1.95
38294769--38294912	39	3.7	39	94	0	261	29	29	22	18	1.97
38304042--38304094	24	2.2	24	82	0	61	35	16	15	32	1.90
38307586--38307667	42	2.0	42	92	2	139	32	17	7	42	1.76
38307626--38307694	31	2.2	32	86	2	95	28	15	8	46	1.76
38309119--38309160	21	2.0	22	85	4	59	33	16	9	40	1.81
38312322--38312362	21	1.9	22	85	5	57	24	7	29	39	1.82
38312322--38312393	21	3.4	21	74	12	51	26	9	30	33	1.89
38312370--38312426	21	2.7	22	76	13	57	31	8	28	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38316831--38316874	20	2.2	21	84	8	56	36	0	4	59	1.18
38327317--38327389	37	2.0	37	83	5	94	30	13	16	39	1.87
38330240--38330302	30	2.1	30	93	0	108	58	15	1	23	1.46
38332237--38332285	24	2.0	25	88	8	73	36	0	16	46	1.47
38332249--38332289	14	3.1	14	82	6	50	41	0	17	41	1.49
38333455--38333522	21	3.2	21	77	4	75	36	13	19	30	1.90
38336108--38336164	28	2.0	28	96	0	105	29	10	28	31	1.90
38338470--38338608	69	2.0	69	95	0	251	30	18	17	32	1.95
38351587--38351639	25	2.1	25	89	0	79	26	30	11	32	1.91
38356491--38356548	30	1.9	31	85	3	82	39	0	37	22	1.54
38357773--38357806	17	2.0	17	94	0	59	41	20	5	32	1.76
38367913--38367977	23	3.0	22	80	13	73	43	3	0	53	1.16
38369514--38369552	20	2.0	20	89	0	60	33	5	10	51	1.58
38373615--38373657	13	3.5	13	75	18	56	37	0	13	48	1.43
38373608--38373659	23	2.3	23	96	3	97	40	0	11	48	1.40
38374612--38374636	6	4.2	6	100	0	50	16	0	0	84	0.63
38376908--38376956	24	2.0	24	96	0	89	24	20	22	32	1.98
38379122--38379443	153	2.1	153	100	0	644	24	40	0	35	1.56
38380477--38380531	13	4.5	13	77	13	62	40	0	9	50	1.34
38382515--38382599	30	2.8	30	82	3	82	17	21	36	24	1.94
38385121--38385205	30	2.8	30	83	0	98	18	18	38	23	1.93
38387281--38387305	11	2.3	11	100	0	50	92	8	0	0	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38387540--38387579	20	2.0	21	85	14	57	0	10	5	85	0.75
38388152--38388185	7	4.7	7	92	3	50	29	0	2	67	1.05
38388268--38388317	19	2.6	19	81	9	57	26	6	0	68	1.13
38388345--38388396	26	2.0	27	85	11	72	21	3	5	69	1.26
38388353--38388430	28	2.7	29	78	15	81	17	5	3	73	1.18
38392104--38392143	19	2.0	20	90	4	64	35	0	12	52	1.39
38393469--38393524	28	2.0	29	82	3	69	46	23	16	14	1.83
38400261--38400423	44	3.7	44	79	1	157	33	14	20	31	1.93
38400369--38400474	51	2.1	51	82	3	124	35	16	17	29	1.93
38400417--38400505	44	2.0	44	86	0	124	33	19	19	28	1.96
38400487--38400590	42	2.5	42	88	3	156	37	14	16	31	1.89
38400611--38400717	44	2.4	43	77	13	101	27	22	21	28	1.99
38402387--38402445	12	5.0	11	75	18	57	15	5	1	77	1.01
38402367--38402430	14	4.4	14	76	4	56	18	4	3	73	1.14
38404277--38404383	43	2.5	43	79	0	106	29	15	26	28	1.96
38406959--38407076	40	2.9	41	78	6	134	29	20	21	28	1.98
38406958--38407090	40	3.3	39	76	7	124	32	19	19	28	1.96
38407464--38407500	15	2.6	14	86	4	56	18	0	35	45	1.50
38407553--38407595	21	2.0	21	81	0	50	20	0	23	55	1.43
38408433--38408496	28	2.3	28	100	0	128	26	12	12	48	1.76
38408513--38408662	72	2.1	73	82	3	178	9	34	5	50	1.57
38412493--38412596	23	4.5	23	93	0	172	33	1	20	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38414351--38414392	22	1.9	22	90	0	66	30	4	11	52	1.59
38415270--38415377	26	4.2	26	93	0	189	32	7	24	36	1.83
38419151--38419191	21	2.0	21	85	9	57	12	24	17	46	1.82
38419132--38419635	93	5.3	92	77	6	357	19	19	15	45	1.85
38423746--38423977	115	2.0	115	97	0	437	35	11	18	34	1.87
38427267--38427533	133	2.0	133	99	0	525	32	29	11	25	1.91
38435232--38435292	31	2.0	31	83	6	79	42	8	13	36	1.74
38435288--38435343	29	1.9	29	82	7	69	37	10	12	39	1.78
38437909--38438017	41	2.7	41	92	0	182	18	21	29	31	1.97
38438359--38438436	22	3.6	21	77	8	68	25	1	25	47	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172