genome.fa.s10.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  40  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12692426--12692459	14	2.4	14	90	0	50	44	0	2	52	1.16
12705434--12705578	71	2.1	69	94	2	254	33	15	13	38	1.86
12706650--12706682	17	1.9	17	88	11	50	60	18	15	6	1.54
12710333--12710362	15	2.0	15	100	0	60	20	20	20	40	1.92
12710789--12710866	28	2.7	29	74	9	70	53	1	2	42	1.22
12710800--12710867	31	2.3	28	78	9	73	54	1	2	41	1.24
12711073--12711098	11	2.4	11	100	0	52	50	7	42	0	1.31
12712137--12712232	39	2.5	39	80	6	108	20	23	28	27	1.99
12721204--12721237	18	1.9	17	88	5	50	52	11	0	35	1.38
12749461--12749650	48	4.0	48	78	4	213	21	15	29	34	1.94
12752897--12752924	14	2.0	14	100	0	56	21	7	7	64	1.43
12754153--12754290	69	2.0	67	88	2	204	48	4	5	41	1.47
12754210--12754258	25	1.9	26	84	12	66	48	6	2	42	1.39
12754165--12754306	68	2.1	69	85	4	189	50	2	4	41	1.38
12767163--12767198	17	2.1	17	89	0	54	41	0	0	58	0.98
12767352--12767384	16	2.0	17	88	5	50	45	3	9	42	1.51
12767575--12767653	30	2.6	32	75	20	87	41	1	3	53	1.27
12771785--12771891	53	2.0	53	98	0	205	35	8	9	46	1.66
12772701--12772744	21	2.1	21	100	0	88	22	18	18	40	1.91
12776701--12776743	4	10.8	4	100	0	86	25	23	0	51	1.49
12793569--12793621	26	2.0	26	100	0	106	52	24	3	18	1.62
12796198--12796345	48	3.1	47	83	1	170	27	20	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12798457--12798613	43	3.7	43	77	7	158	31	25	19	23	1.98
12805323--12805543	93	2.4	94	80	11	249	28	20	27	22	1.99
12812357--12812607	130	1.9	130	86	4	355	31	18	16	33	1.94
12812357--12812658	130	2.3	128	82	3	347	29	18	18	33	1.95
12812734--12812968	130	1.8	130	85	1	337	26	19	19	34	1.95
12841372--12841448	9	8.6	9	80	5	75	45	15	9	29	1.77
12841371--12841440	18	3.9	18	81	7	88	47	15	8	28	1.75
12841371--12841448	36	2.2	36	85	0	111	46	15	8	29	1.76
12841532--12841556	13	1.9	13	100	0	50	12	0	48	40	1.40
12841533--12841567	18	1.9	18	94	0	61	8	2	48	40	1.49
12843227--12843331	20	5.3	20	77	8	90	37	15	11	36	1.83
12843547--12843638	50	1.9	45	81	14	105	35	20	20	22	1.96
12845589--12845716	65	2.0	65	84	3	168	35	23	18	21	1.95
12857376--12857417	17	2.3	19	84	8	52	28	4	11	54	1.57
12863786--12863900	43	2.7	43	80	8	119	27	14	23	33	1.94
12865611--12865685	28	2.7	28	89	0	114	22	16	33	28	1.95
12868669--12868769	43	2.3	43	83	3	114	24	16	26	31	1.97
12872433--12872505	35	2.1	35	87	5	103	46	10	21	20	1.81
12873272--12873392	60	2.0	60	96	0	224	27	13	21	38	1.90
12876617--12876731	43	2.7	43	78	5	126	28	13	21	35	1.92
12877387--12877411	11	2.3	11	100	0	50	16	8	28	48	1.74
12878622--12878652	8	3.9	8	91	0	53	3	22	25	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12879392--12879449	15	4.1	15	70	18	52	67	0	27	5	1.12
12879394--12879451	11	5.5	11	68	15	50	68	0	25	5	1.10
12879391--12879451	23	2.9	22	76	11	65	67	0	27	4	1.11
12880341--12880384	19	2.4	18	85	7	54	40	9	0	50	1.34
12888080--12888114	16	2.2	16	94	0	61	17	28	11	42	1.83
12893009--12893186	27	6.6	27	83	3	205	26	15	28	29	1.96
12893010--12893165	82	1.9	81	88	3	233	26	15	28	29	1.96
12893006--12893186	82	2.2	81	83	2	229	27	15	27	29	1.96
12895005--12895134	39	3.3	39	92	0	188	24	29	20	26	1.99
12903785--12903825	22	1.9	21	85	5	55	80	2	12	4	0.97
12904853--12904892	3	13.3	3	100	0	80	0	32	0	67	0.91
12907350--12907523	87	2.0	89	89	2	271	35	13	20	30	1.91
12913140--12913213	28	2.6	29	89	4	107	24	20	24	31	1.98
12913140--12913224	28	3.0	29	82	3	66	25	20	22	31	1.98
12920265--12920316	26	2.0	26	92	0	86	13	28	23	34	1.92
12928290--12928341	26	2.0	26	92	0	86	13	28	26	30	1.94
12931580--12931631	26	2.0	26	92	0	86	13	28	26	30	1.94
12933508--12933634	43	3.0	43	87	2	168	22	32	20	24	1.98
12933562--12933675	43	2.6	46	86	8	141	25	29	21	22	1.99
12935341--12935370	15	2.1	15	93	6	53	36	26	6	30	1.82
12935722--12935753	17	1.9	16	93	6	55	31	3	6	59	1.38
12947362--12947530	46	3.6	46	74	12	157	24	27	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12947323--12947532	94	2.3	90	80	10	212	24	28	19	27	1.98
12952272--12952454	79	2.3	81	83	7	223	24	27	22	24	2.00
12952251--12952454	40	5.1	40	81	8	229	24	27	22	25	2.00
12960751--12960898	49	3.0	49	100	0	296	24	18	8	49	1.74
12968136--12968341	53	3.9	54	76	7	188	21	23	18	36	1.95
12975877--12976211	101	3.3	101	100	0	670	40	10	13	35	1.79
12978067--12978093	13	2.1	13	100	0	54	48	7	0	44	1.31
12989747--12989832	41	2.1	41	93	4	147	31	2	17	48	1.60
12991713--12991742	14	2.1	14	93	0	51	16	6	10	66	1.41
12999033--12999079	20	2.3	20	100	0	94	44	4	12	38	1.62
12999311--12999460	67	2.2	67	81	8	171	32	17	28	21	1.96
12999335--12999518	67	2.8	64	77	8	194	29	17	29	22	1.97
13004761--13004798	17	2.2	17	95	0	67	28	21	18	31	1.97
13012796--13012820	13	1.9	13	100	0	50	24	12	0	64	1.27
13018204--13018278	28	2.7	28	82	0	96	25	14	32	28	1.95
13025797--13025831	16	2.2	16	89	0	52	42	25	20	11	1.85
13026048--13026122	28	2.7	28	76	0	87	25	13	33	28	1.93
13035870--13035903	18	1.9	18	94	5	61	44	11	14	29	1.81
13038110--13038157	19	2.5	19	86	0	69	45	16	12	25	1.82
13038188--13038236	17	2.8	18	81	6	55	14	8	4	73	1.21
13045228--13045261	17	2.0	17	88	11	52	5	8	29	55	1.54
13048631--13048725	48	2.0	48	97	0	181	27	18	20	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13057849--13058064	46	4.7	46	83	10	287	28	29	20	21	1.98
13057849--13058074	93	2.4	92	86	6	289	28	29	20	21	1.98
13057854--13058089	46	5.1	46	79	12	175	28	28	20	21	1.98
13062648--13063203	206	2.7	206	88	1	817	28	21	17	31	1.96
13075189--13075297	57	1.9	58	88	1	166	28	28	19	23	1.98
13075497--13075613	40	2.9	40	78	5	128	26	26	22	24	2.00
13075701--13075857	40	3.9	40	79	3	172	24	26	22	25	2.00
13075420--13075827	205	2.0	205	99	0	807	29	26	20	23	1.99
13079270--13079347	29	2.7	28	84	11	104	25	14	30	29	1.94
13079300--13079627	174	1.9	174	96	0	602	30	14	24	31	1.94
13081524--13081667	49	3.0	49	90	2	229	29	29	8	32	1.87
13089601--13089636	19	1.9	19	88	5	56	44	22	0	33	1.53
13091491--13091655	50	3.3	50	83	1	172	24	30	18	25	1.98
13091718--13091805	44	2.0	44	95	0	158	27	22	15	34	1.95
13096457--13096579	26	4.8	26	83	1	151	26	23	23	26	2.00
13096457--13096575	52	2.3	51	89	2	186	27	24	24	23	2.00
13096629--13096703	20	3.8	20	91	6	111	33	18	9	38	1.83
13096629--13096684	11	5.5	11	71	16	57	32	19	10	37	1.86
13096646--13096702	9	5.8	10	76	15	57	33	19	8	38	1.82
13098025--13098081	29	1.9	30	92	3	98	33	17	22	26	1.96
13098053--13098304	41	6.2	40	85	4	281	31	22	24	21	1.98
13098053--13098304	123	2.1	122	87	3	355	31	22	24	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13098079--13098303	82	2.8	82	86	0	326	31	22	24	21	1.99
13098916--13098964	24	2.0	24	100	0	98	53	0	4	42	1.20
13099329--13099368	21	1.9	21	94	0	71	72	5	2	20	1.15
13099783--13099834	14	3.8	13	77	12	52	59	3	1	34	1.27
13104359--13104429	30	2.4	31	79	9	76	25	2	4	67	1.22
13104372--13104424	12	4.2	12	79	18	54	24	1	3	69	1.15
13104543--13104648	43	2.5	43	90	0	167	24	21	28	25	1.99
13115832--13115976	43	3.4	43	93	0	236	34	23	13	28	1.93
13122224--13122259	6	6.0	6	93	0	63	16	2	0	80	0.83
13123256--13123280	4	6.2	4	100	0	50	52	24	0	24	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172