genome.fa.s10.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  95  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31981188--31981369	101	1.8	101	88	0	283	26	18	25	29	1.98
31996505--31996645	43	3.3	42	79	5	124	31	22	16	29	1.96
31996548--31996651	43	2.4	43	82	4	131	33	24	14	27	1.94
32002707--32002884	27	6.6	27	82	3	196	26	15	28	29	1.96
32002708--32002863	82	1.9	81	86	3	224	26	15	28	29	1.96
32002704--32002884	82	2.2	81	82	2	220	26	15	28	29	1.96
32007596--32007632	16	2.3	16	95	0	65	48	13	24	13	1.78
32007848--32007959	28	4.0	28	79	9	120	31	10	30	27	1.90
32010726--32010800	37	2.0	37	87	5	107	40	25	13	21	1.89
32012805--32012836	15	2.1	15	94	0	55	53	3	37	6	1.42
32015669--32015708	20	2.0	21	85	14	57	17	12	2	67	1.33
32021348--32021434	41	2.1	42	87	6	124	34	10	0	55	1.34
32028686--32028728	22	2.0	22	85	0	59	30	23	30	16	1.96
32034299--32034414	43	2.7	43	79	1	135	23	17	28	31	1.97
32035145--32035349	101	2.0	100	96	0	374	41	10	14	32	1.80
32044169--32044345	90	2.0	89	83	0	219	27	18	18	35	1.94
32046449--32046477	15	1.9	15	100	0	58	44	6	13	34	1.71
32048870--32049014	40	3.6	40	85	4	193	25	24	26	23	2.00
32068801--32068873	30	2.4	31	81	9	96	41	4	4	50	1.40
32070259--32070324	34	1.9	34	100	0	132	45	15	6	33	1.70
32070838--32070874	16	2.2	17	95	4	67	72	0	5	21	1.04
32075818--32075936	58	2.1	58	93	0	202	27	10	26	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32080592--32080625	15	2.3	15	89	0	50	11	2	41	44	1.56
32084330--32084358	14	2.1	14	100	0	58	44	20	20	13	1.85
32090013--32090157	43	3.4	42	77	12	127	24	18	26	30	1.98
32096662--32096708	21	2.2	21	88	0	67	19	21	23	36	1.95
32102970--32103123	42	3.6	42	76	1	164	29	13	24	32	1.94
32104286--32104339	20	2.7	20	88	0	81	22	37	27	12	1.91
32120311--32120458	42	3.5	42	76	2	145	29	15	24	30	1.96
32126947--32127079	39	3.4	39	90	2	205	29	20	25	24	1.99
32126947--32127106	78	2.1	78	82	7	191	27	21	26	24	1.99
32127118--32127148	14	2.2	14	100	0	62	25	22	32	19	1.97
32127079--32127187	53	2.1	53	92	0	182	21	22	30	26	1.98
32127132--32127301	39	4.3	39	90	1	250	20	21	28	29	1.98
32133676--32133713	14	2.9	13	81	11	51	57	10	13	18	1.63
32134931--32134984	20	2.7	20	79	0	72	22	33	27	16	1.95
32137597--32137658	32	1.9	33	84	12	85	29	0	17	53	1.44
32140125--32140386	40	6.6	40	90	1	366	30	25	20	23	1.99
32148651--32148833	79	2.3	81	83	9	225	24	27	23	24	2.00
32148630--32148833	40	5.1	40	81	8	229	24	27	23	24	2.00
32161791--32161841	26	2.0	26	100	0	102	25	23	27	23	2.00
32161817--32161943	48	2.7	47	86	4	168	23	25	21	29	1.99
32161817--32161954	46	3.0	46	82	2	159	25	26	20	28	1.99
32162654--32162680	13	2.1	13	100	0	54	70	14	0	14	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32164596--32164658	31	2.0	31	100	0	126	46	15	9	28	1.78
32169983--32170028	23	2.0	23	84	12	60	45	10	6	36	1.65
32169990--32170034	23	2.0	23	82	8	56	40	13	8	37	1.76
32172420--32172678	131	2.0	131	97	0	491	37	17	3	40	1.68
32174153--32174246	33	2.8	34	76	9	86	27	23	23	25	2.00
32178775--32178888	27	4.2	26	83	5	111	35	21	23	19	1.95
32178775--32178888	55	2.1	55	83	6	144	35	21	23	19	1.95
32178984--32179037	26	2.2	25	80	9	65	33	11	22	33	1.89
32188889--32188985	49	2.0	49	97	0	185	21	13	22	42	1.88
32197547--32197625	27	2.9	28	86	5	99	40	20	21	17	1.91
32197726--32197791	26	2.5	28	80	9	84	27	12	24	36	1.91
32202270--32202299	15	2.0	15	100	0	60	40	26	0	33	1.57
32210310--32210375	34	1.9	35	84	9	91	21	25	9	43	1.81
32218113--32218145	17	2.1	16	88	11	50	45	12	0	42	1.41
32219544--32219687	28	5.4	27	81	13	183	36	14	25	23	1.93
32219544--32219675	52	2.5	52	95	0	228	37	15	24	23	1.93
32219711--32219910	51	3.9	51	86	2	278	32	14	23	30	1.94
32222376--32222421	24	1.9	24	100	0	92	43	17	4	34	1.69
32226295--32226393	52	1.9	52	97	0	189	22	24	21	32	1.98
32227522--32227679	66	2.5	63	76	9	167	28	16	31	23	1.96
32227522--32227701	63	2.8	62	76	11	184	28	17	30	23	1.97
32241433--32241507	22	3.3	22	67	17	62	25	30	10	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32241405--32241678	47	5.7	47	90	4	415	28	29	7	33	1.85
32241405--32241678	96	2.9	96	90	3	419	28	29	7	33	1.85
32252195--32252358	43	3.8	43	76	6	154	31	25	17	25	1.97
32252195--32252362	85	2.0	86	80	7	189	33	25	17	24	1.96
32253656--32253696	19	2.2	19	86	0	55	70	7	4	17	1.28
32254156--32254246	28	3.2	28	90	4	139	31	23	24	20	1.98
32254352--32254472	28	4.3	28	93	0	197	33	7	25	33	1.84
32254719--32254750	8	4.0	8	91	0	55	3	25	25	46	1.67
32263070--32263156	28	3.1	28	83	6	104	27	29	14	27	1.96
32263400--32263435	16	2.2	16	90	0	54	8	13	19	58	1.61
32272520--32272548	14	2.0	15	93	6	51	51	20	0	27	1.47
32274425--32274607	40	4.6	40	93	1	287	20	22	28	27	1.99
32274425--32274642	80	2.7	79	83	8	273	22	22	28	27	1.99
32282610--32282787	40	4.5	40	87	3	218	22	24	28	24	1.99
32284964--32285118	42	3.7	41	82	5	177	29	15	25	29	1.96
32285264--32285293	15	1.9	16	93	6	53	33	0	26	40	1.57
32286221--32286299	39	2.0	39	97	0	149	11	31	37	18	1.87
32286286--32286338	20	2.7	20	91	2	90	18	35	32	13	1.90
32292178--32292257	24	3.4	24	62	16	58	22	31	15	31	1.94
32292655--32292778	64	1.9	64	91	0	203	31	29	13	25	1.94
32297250--32297357	54	2.0	54	94	0	189	24	25	24	26	2.00
32299746--32299845	51	2.0	50	91	0	155	33	29	9	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32300707--32300854	74	2.0	74	93	0	251	24	25	15	35	1.94
32309622--32309685	29	2.2	29	91	0	101	17	21	42	18	1.89
32311741--32311770	16	1.9	15	93	6	51	26	13	23	36	1.92
32321076--32321264	38	4.9	38	95	0	297	31	26	21	19	1.97
32325258--32325319	31	2.0	31	96	0	115	32	22	1	43	1.63
32326177--32326281	51	2.1	51	98	0	201	36	10	13	40	1.79
32336100--32336218	27	4.4	27	83	0	139	36	18	20	25	1.95
32336842--32336903	31	2.0	32	83	3	81	17	24	22	35	1.95
32340352--32340450	28	3.5	28	87	4	119	27	16	27	29	1.97
32341935--32342092	80	2.0	80	97	0	298	27	15	18	37	1.92
32348349--32348421	28	2.6	28	86	2	92	26	13	30	30	1.94
32348374--32348445	28	2.6	28	88	4	101	29	15	25	30	1.96
32357127--32357252	46	2.7	46	95	0	216	28	28	22	20	1.98
32357129--32357271	46	3.1	45	87	4	137	27	29	21	20	1.98
32361666--32361697	17	1.9	17	93	6	57	50	0	6	43	1.27
32367815--32367957	71	2.0	71	98	0	277	41	9	21	27	1.84
32379981--32380050	34	2.1	34	94	0	122	34	14	27	24	1.94
32385195--32385345	43	3.5	43	76	6	153	31	16	21	30	1.95
32392858--32393028	43	4.0	43	75	7	134	28	15	25	30	1.96
32397362--32397724	46	7.7	49	71	13	192	23	29	20	26	1.99
32397364--32397541	49	3.7	47	75	15	159	24	31	20	23	1.98
32397368--32397543	96	1.8	96	84	8	239	24	31	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32403564--32403629	30	2.2	30	91	0	105	22	28	13	34	1.92
32403622--32403682	29	2.1	30	81	3	70	18	24	13	44	1.85
32404958--32405080	46	2.7	46	92	0	192	20	20	29	30	1.97
32406385--32406460	30	2.6	30	87	2	109	26	27	10	35	1.89
32408015--32408141	41	3.1	42	83	3	159	36	24	16	22	1.94
32409358--32409433	31	2.4	30	87	12	93	23	22	10	43	1.84
32411120--32411158	20	2.0	20	89	0	60	46	20	0	33	1.51
32412620--32412700	39	2.0	40	95	4	146	43	18	6	32	1.75
32414050--32414127	41	1.9	41	89	0	120	32	33	19	15	1.93
32415640--32416079	27	16.3	27	80	6	248	37	20	8	33	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172