genome.fa.s10.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  105  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35155696--35155842	42	3.5	42	80	4	179	27	25	20	26	1.99
35163042--35163196	42	3.7	42	70	11	127	29	26	18	25	1.98
35163040--35163242	85	2.4	85	83	3	255	30	26	18	25	1.98
35163095--35163239	43	3.4	43	70	14	129	29	24	18	27	1.98
35166192--35166423	43	5.4	43	87	1	340	28	27	18	25	1.98
35166560--35166625	34	1.9	35	84	9	91	54	4	4	36	1.41
35172952--35173279	72	4.6	72	99	0	638	42	24	6	27	1.78
35173280--35173305	3	8.7	3	100	0	52	69	0	0	30	0.89
35179021--35179060	17	2.3	18	91	4	64	30	27	12	30	1.93
35181388--35181418	16	1.9	16	93	0	53	41	3	9	45	1.53
35181356--35181412	26	2.2	25	81	3	69	47	3	10	38	1.55
35181582--35181635	15	3.7	15	71	14	58	42	35	0	22	1.54
35182570--35182666	39	2.5	39	81	5	108	25	29	24	19	1.98
35182599--35182715	39	3.0	38	81	3	119	24	29	23	23	1.99
35190730--35190826	39	2.5	39	81	5	108	25	29	24	19	1.98
35193215--35193253	14	2.8	14	88	0	60	48	25	0	25	1.51
35193604--35193780	75	2.4	75	87	0	246	29	18	19	32	1.96
35195116--35195168	3	17.7	3	92	0	88	62	1	1	33	1.17
35195647--35195676	15	1.9	16	93	6	53	36	13	3	46	1.60
35195681--35195847	5	33.4	5	98	0	325	59	0	0	40	0.97
35201214--35201276	28	2.2	28	100	0	126	22	26	26	23	2.00
35217482--35217565	34	2.6	32	85	9	107	33	3	19	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35217955--35218077	64	1.9	63	93	1	210	26	19	26	27	1.99
35219131--35219180	25	2.0	25	92	0	82	34	16	24	26	1.95
35228374--35228579	27	7.3	27	80	10	189	28	23	9	38	1.86
35228467--35228535	35	2.0	35	91	5	113	36	20	8	34	1.83
35228436--35228561	62	2.0	62	86	6	175	33	20	7	38	1.80
35228413--35228579	89	1.9	89	88	2	255	29	23	8	37	1.85
35228611--35228734	27	4.6	27	81	6	144	43	21	6	28	1.77
35228569--35228707	54	2.6	52	77	13	131	38	20	10	29	1.87
35228611--35228811	54	3.7	55	78	6	187	41	19	7	31	1.80
35228611--35228816	109	1.9	108	80	3	243	40	20	7	30	1.81
35228664--35228796	27	4.9	26	75	12	99	42	19	6	32	1.76
35228841--35228892	27	1.9	27	84	7	70	38	23	21	17	1.93
35229724--35229793	25	2.8	26	93	4	117	25	25	22	25	2.00
35229941--35230074	42	3.2	42	98	0	259	31	14	20	33	1.93
35230098--35230181	31	2.7	31	96	1	152	27	17	27	27	1.98
35234524--35234561	18	2.1	18	95	0	67	55	13	0	31	1.38
35237472--35237559	43	2.0	43	86	0	122	22	22	39	14	1.91
35237480--35237559	21	3.8	20	72	9	61	22	25	37	15	1.93
35238332--35238360	14	2.0	15	93	6	51	75	20	0	3	0.94
35248299--35248330	16	2.0	16	100	0	64	25	6	31	37	1.81
35249245--35249277	14	2.4	14	90	10	50	39	0	0	60	0.97
35255488--35255654	84	2.0	83	90	1	262	23	18	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35264416--35264474	23	2.6	23	94	0	109	33	3	6	55	1.43
35264415--35264474	11	5.2	12	76	7	54	35	3	6	55	1.43
35271259--35271288	12	2.5	12	94	0	51	23	50	13	13	1.77
35273450--35273596	72	2.0	72	100	0	294	29	24	29	16	1.96
35276538--35276918	192	2.0	190	97	1	717	32	29	14	23	1.94
35285042--35285084	16	2.7	16	85	0	59	48	20	20	9	1.77
35285299--35285405	29	3.8	29	88	2	155	25	14	31	28	1.94
35285297--35285405	57	1.9	57	88	3	166	25	13	31	29	1.94
35287977--35288035	22	2.6	22	81	7	66	35	15	22	27	1.94
35295590--35295720	46	2.8	48	78	14	157	22	19	28	30	1.98
35303162--35303292	46	2.8	48	79	14	166	22	19	28	29	1.98
35305624--35305675	22	2.5	19	76	14	50	38	5	15	40	1.71
35307703--35307781	31	2.5	31	93	0	140	26	26	17	29	1.98
35307805--35307896	42	2.2	42	90	0	139	33	21	15	29	1.94
35308041--35308138	26	3.8	26	87	4	137	27	22	22	27	1.99
35308941--35309023	27	3.1	27	84	8	91	22	25	20	31	1.98
35309063--35309314	81	3.1	79	74	8	211	32	7	19	39	1.81
35309063--35309301	27	8.8	27	76	8	189	32	8	18	40	1.81
35309293--35309449	27	5.8	27	86	3	190	37	7	26	29	1.82
35309175--35309325	54	2.8	54	82	6	189	33	7	19	39	1.80
35309282--35309463	81	2.2	81	77	1	204	35	6	25	32	1.82
35309455--35309544	27	3.3	27	87	3	128	33	10	16	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35309429--35309544	54	2.1	54	82	6	137	31	9	18	40	1.83
35311700--35311769	23	2.9	23	78	6	68	32	18	22	25	1.97
35312468--35312508	21	2.0	21	85	0	55	46	19	0	34	1.50
35314650--35314728	37	2.1	37	86	4	106	25	29	18	26	1.98
35314847--35315288	47	9.4	47	95	0	758	28	28	8	33	1.87
35319032--35319209	27	6.6	27	82	3	196	26	14	28	30	1.95
35319033--35319188	82	1.9	81	86	3	224	26	14	28	30	1.95
35319029--35319209	82	2.2	81	82	2	220	27	14	27	30	1.95
35319167--35319220	27	2.0	27	81	0	63	27	14	27	29	1.95
35327097--35327245	27	5.5	27	78	3	122	26	16	26	29	1.97
35327097--35327245	81	1.8	81	82	2	192	26	16	26	29	1.97
35332981--35333115	55	2.5	55	75	0	126	31	31	23	12	1.92
35335005--35335064	6	10.0	6	78	7	59	21	1	1	75	0.99
35345436--35345514	31	2.5	31	89	0	113	29	21	16	32	1.95
35345725--35345874	26	5.8	26	87	0	212	26	23	22	28	1.99
35346678--35346764	27	3.2	27	83	3	104	21	26	17	34	1.95
35346822--35347073	27	9.3	27	76	10	156	29	9	21	40	1.84
35346908--35347059	80	1.9	80	88	0	232	27	7	21	42	1.80
35346795--35347073	54	5.1	54	74	6	204	30	9	21	39	1.85
35347061--35347181	27	4.5	27	89	0	179	45	10	17	26	1.81
35347010--35347219	81	2.6	81	72	0	213	37	9	19	34	1.83
35351958--35352352	27	14.7	27	81	1	400	41	14	14	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35356203--35356277	27	2.8	27	77	2	80	41	17	14	26	1.88
35358671--35358710	21	2.0	20	85	5	53	10	32	25	32	1.89
35363799--35364023	40	5.6	40	83	2	281	25	24	26	22	2.00
35363799--35364059	80	3.3	80	82	3	294	26	24	26	22	2.00
35372011--35372235	40	5.6	40	79	2	227	27	23	24	24	2.00
35379940--35380172	49	4.7	50	79	4	247	25	16	27	29	1.97
35384600--35384714	58	2.0	58	94	0	203	43	12	16	27	1.83
35385213--35385506	50	5.9	50	81	2	338	26	19	25	28	1.99
35385221--35385505	150	1.9	150	99	0	561	25	19	25	29	1.98
35397848--35397878	13	2.4	13	100	0	62	51	35	0	12	1.40
35401550--35401600	26	2.0	26	96	0	93	35	25	21	17	1.95
35408923--35408960	17	2.0	20	85	14	55	31	13	5	50	1.63
35419968--35420813	48	17.7	47	97	0	186	33	7	29	30	1.84
35420063--35420869	48	16.8	48	99	0	1596	33	6	29	31	1.82
35421015--35421123	37	2.9	37	94	0	182	23	19	30	26	1.98
35421123--35421596	237	2.0	237	100	0	948	32	13	22	31	1.93
35426207--35426277	33	2.2	33	84	2	90	21	23	38	16	1.93
35426519--35426562	22	2.0	22	86	0	61	43	0	4	52	1.22
35445039--35445283	40	6.1	40	85	6	300	26	27	22	23	2.00
35450151--35450240	34	2.6	33	77	16	85	28	26	20	24	1.99
35459876--35460100	40	5.7	40	80	8	230	25	22	25	26	2.00
35459876--35460100	79	2.8	80	82	7	235	25	22	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35459876--35460100	119	1.9	120	81	8	280	25	22	25	26	2.00
35459958--35460133	79	2.2	79	79	7	180	28	20	25	25	1.99
35466127--35466294	46	3.6	46	75	9	153	24	27	20	26	1.99
35467435--35467565	67	2.0	67	87	3	192	26	29	17	25	1.97
35467678--35467797	60	2.0	60	90	3	188	25	25	17	30	1.97
35469665--35469891	27	8.4	27	77	5	156	40	18	11	30	1.85
35469670--35469870	54	3.7	54	79	6	208	38	17	11	32	1.85
35470127--35470213	27	3.2	26	83	6	102	19	21	21	36	1.95
35470374--35470428	28	2.0	28	81	0	65	18	25	27	29	1.98
35473123--35473182	30	2.0	30	83	0	75	30	23	8	38	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172