genome.fa.s10.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  134  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44256550--44256932	177	2.2	177	83	3	423	32	19	20	27	1.97
44256819--44257164	177	2.0	177	80	2	390	31	18	21	28	1.97
44257169--44257461	134	2.2	134	85	1	392	31	18	21	28	1.97
44257265--44257638	89	4.2	90	76	6	343	31	20	20	27	1.98
44256995--44257638	45	14.5	44	71	8	227	31	19	21	28	1.97
44257172--44257599	134	3.2	132	80	5	391	31	19	21	28	1.97
44258386--44258714	3	109.0	3	67	18	53	27	8	3	61	1.40
44258389--44258438	23	2.2	23	85	0	64	36	6	0	58	1.23
44258662--44258714	22	2.5	21	81	6	70	28	5	0	66	1.15
44258876--44259137	126	2.1	128	83	7	329	35	12	15	36	1.86
44284185--44284235	13	3.2	18	66	28	51	33	11	3	50	1.57
44290952--44290984	17	2.0	17	94	5	59	36	3	6	54	1.41
44293230--44293338	55	2.0	55	90	0	173	40	10	11	38	1.74
44294100--44294200	51	2.0	51	98	1	195	29	11	3	54	1.55
44294611--44294694	41	2.0	41	100	0	168	41	4	19	34	1.72
44297749--44298083	154	2.2	154	93	0	562	22	26	19	32	1.97
44297749--44298135	154	2.5	154	88	2	512	21	26	19	32	1.97
44299896--44299995	43	2.3	43	89	3	148	24	14	26	36	1.93
44300894--44300947	22	2.5	22	93	6	92	20	0	27	51	1.47
44300840--44300999	76	2.1	77	94	2	279	25	1	26	46	1.60
44303542--44303584	20	2.2	20	83	8	52	20	0	4	74	1.00
44305605--44305658	22	2.5	22	93	6	92	20	0	27	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44305551--44305710	76	2.1	77	94	2	279	25	1	26	46	1.60
44308253--44308295	20	2.2	20	83	8	52	20	0	4	74	1.00
44311791--44311844	22	2.5	22	93	6	92	20	0	27	51	1.47
44311737--44311896	76	2.1	77	94	2	279	25	1	26	46	1.60
44314439--44314481	20	2.2	20	83	8	52	20	0	4	74	1.00
44323079--44323131	21	2.6	21	93	3	90	28	15	0	56	1.39
44323825--44323870	18	2.6	18	80	10	58	54	2	0	43	1.12
44323817--44323881	19	3.3	19	80	8	60	56	3	0	40	1.15
44323826--44323886	19	3.4	18	80	10	63	52	3	0	44	1.17
44323849--44323943	26	3.4	28	72	16	81	57	3	2	36	1.26
44333712--44334156	220	2.0	220	100	0	890	24	15	37	23	1.93
44334294--44334335	22	1.9	22	90	0	66	11	16	0	71	1.14
44334294--44334334	12	3.6	12	80	12	50	12	17	0	70	1.16
44337646--44337685	20	2.0	20	85	5	53	55	2	12	30	1.50
44337751--44337802	27	1.9	27	84	0	68	61	0	13	25	1.32
44337676--44337812	26	5.3	26	67	16	81	60	1	13	24	1.41
44337676--44337924	76	3.4	73	78	8	222	59	1	14	25	1.44
44338038--44338082	5	8.6	5	80	9	54	62	0	17	20	1.33
44337998--44338045	21	2.4	21	93	6	82	66	0	6	27	1.15
44338038--44338082	16	2.9	15	80	9	54	62	0	17	20	1.33
44338038--44338082	11	4.3	10	81	10	54	62	0	17	20	1.33
44338395--44338509	14	8.3	14	68	28	61	67	0	7	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44338396--44338537	19	7.3	19	70	18	80	69	0	6	23	1.11
44338398--44338521	57	2.2	57	88	5	182	67	0	7	25	1.16
44338423--44338517	14	6.6	14	75	17	63	67	0	8	24	1.18
44338415--44338535	5	23.8	5	70	15	61	69	0	6	23	1.12
44338919--44339214	107	2.7	111	87	3	429	30	21	16	31	1.96
44338919--44339214	55	5.4	55	72	19	240	30	21	16	31	1.96
44338919--44339211	57	5.3	56	71	18	229	29	22	16	31	1.96
44344927--44345022	50	1.9	50	89	4	149	35	18	10	35	1.85
44345907--44346595	128	5.2	132	76	9	482	29	15	13	41	1.85
44364971--44365053	27	3.1	26	91	5	130	34	21	25	18	1.96
44375042--44375092	16	2.9	17	83	16	61	5	17	5	70	1.28
44375022--44375092	33	2.1	35	86	5	101	4	18	4	73	1.16
44378344--44378378	17	1.9	19	88	11	56	62	8	8	20	1.49
44381233--44381319	44	2.0	44	93	0	147	44	12	14	27	1.82
44384351--44384636	132	2.2	133	83	5	355	36	19	18	25	1.95
44394190--44394219	15	2.0	15	93	0	51	76	10	6	6	1.15
44395796--44395899	52	2.0	52	100	0	208	28	23	21	26	1.99
44400460--44400508	25	2.0	25	95	0	89	30	10	26	32	1.89
44401482--44401862	25	15.6	24	66	15	122	59	4	6	29	1.45
44401561--44401642	26	3.2	26	85	1	103	60	3	7	28	1.40
44401722--44401815	27	3.6	26	71	16	79	62	7	4	25	1.40
44401742--44401861	48	2.4	48	80	6	116	60	5	5	29	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44402124--44402166	11	3.9	11	84	0	59	23	16	4	55	1.59
44402125--44402172	11	4.4	11	81	0	51	22	12	6	58	1.57
44404038--44404434	44	8.7	44	70	12	244	27	23	19	29	1.98
44404119--44404433	89	3.5	87	75	8	279	28	23	18	29	1.98
44404042--44404477	184	2.4	183	85	1	586	27	22	20	29	1.98
44404737--44405281	44	12.4	44	66	7	266	28	20	22	28	1.99
44404692--44405281	88	6.7	88	90	0	853	28	20	22	28	1.98
44405287--44406096	130	6.2	130	91	0	1125	26	21	20	31	1.98
44411732--44411825	26	3.5	27	80	11	70	60	3	8	27	1.41
44411679--44411836	73	2.2	73	80	7	169	58	3	8	29	1.44
44411755--44411997	26	9.8	25	68	19	109	60	4	5	29	1.39
44411883--44412045	50	3.3	48	75	13	127	63	4	3	28	1.32
44412040--44412065	12	2.2	12	100	0	52	76	7	7	7	1.15
44414219--44414287	35	2.0	35	88	5	104	39	13	10	37	1.78
44415808--44415868	29	2.2	28	85	5	79	21	6	8	63	1.44
44416900--44416940	17	2.2	19	87	12	59	34	9	4	51	1.56
44417535--44417625	28	3.2	28	89	6	139	34	27	4	34	1.77
44420932--44420973	6	7.0	6	94	0	75	66	2	0	30	1.04
44423178--44423227	25	2.0	25	84	11	66	26	26	2	46	1.64
44424305--44424349	21	2.1	22	88	12	67	0	28	0	71	0.87
44424314--44424355	20	2.0	21	86	4	59	4	26	0	69	1.08
44424364--44424394	2	15.5	2	100	0	62	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44428254--44428317	13	4.9	13	73	7	58	35	1	20	42	1.62
44446357--44446403	19	2.5	19	83	16	62	6	4	14	74	1.17
44446651--44446683	2	16.5	2	100	0	66	0	48	0	51	1.00
44447303--44447400	18	5.3	18	69	13	56	57	4	4	34	1.37
44450359--44450414	19	2.9	19	78	5	60	30	10	1	57	1.43
44454700--44454774	39	1.9	39	83	5	98	33	6	5	54	1.49
44457314--44457363	24	2.1	24	85	7	66	22	22	14	42	1.88
44458660--44458719	30	2.0	30	96	0	111	33	25	16	25	1.96
44462707--44462763	30	1.9	30	92	0	96	33	21	14	31	1.92
44464108--44464141	17	1.9	18	88	5	52	44	29	20	5	1.75
44466304--44466390	19	4.3	19	68	24	61	32	5	5	56	1.47
44468299--44468392	31	3.1	30	74	7	84	31	8	11	47	1.70
44468589--44468651	31	2.1	30	82	5	74	49	12	7	30	1.69
44469093--44469157	22	2.8	23	76	6	69	16	7	10	64	1.47
44470376--44470788	207	2.0	207	95	0	736	19	20	14	46	1.84
44470817--44470843	12	2.2	12	100	0	54	29	0	0	70	0.88
44471974--44472010	18	2.1	18	100	0	74	35	21	5	37	1.77
44473825--44473963	27	5.1	27	75	11	142	35	20	23	20	1.96
44473825--44473963	54	2.6	54	86	4	201	35	20	23	20	1.96
44474071--44474144	26	2.8	26	85	4	85	31	10	22	35	1.89
44474383--44474412	16	1.9	15	93	6	51	3	20	23	53	1.60
44475588--44475695	26	4.2	26	93	0	189	36	24	7	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44482305--44482412	26	4.2	26	91	0	180	37	24	6	32	1.81
44485600--44485667	22	3.0	22	79	10	75	42	19	20	17	1.89
44486473--44486684	26	8.2	26	98	1	381	32	7	24	35	1.84
44496795--44496873	29	2.6	30	86	9	99	48	6	3	41	1.47
44499751--44499794	22	1.9	22	86	9	61	70	0	9	20	1.14
44499748--44499807	24	2.5	24	72	8	59	75	0	8	16	1.04
44499865--44499921	28	2.0	28	83	13	71	64	8	3	22	1.37
44500561--44500590	14	2.1	14	93	0	51	56	0	10	33	1.32
44503359--44503864	176	2.9	176	85	1	683	28	24	16	30	1.97
44506267--44506360	46	2.0	47	87	2	136	35	27	22	14	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172