genome.fa.s10.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  94  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31642379--31642404	3	8.7	3	100	0	52	0	0	30	69	0.89
31642651--31642707	3	18.7	3	81	3	51	54	1	7	36	1.38
31646700--31646740	21	2.0	21	95	0	73	12	17	36	34	1.87
31646699--31646744	21	2.3	19	82	13	65	10	15	39	34	1.82
31649499--31649537	2	19.5	2	100	0	78	51	48	0	0	1.00
31649899--31649934	18	2.0	18	88	0	54	11	2	8	77	1.08
31652773--31652820	21	2.2	22	88	3	71	31	31	29	8	1.87
31653634--31653658	6	4.2	6	100	0	50	68	0	0	32	0.90
31655643--31655674	15	2.1	15	100	0	64	56	6	6	31	1.49
31658716--31658767	26	2.0	26	85	7	70	19	25	19	36	1.95
31658726--31658903	72	2.4	72	78	9	182	19	26	19	34	1.96
31663099--31663146	19	2.5	19	86	3	60	47	22	20	8	1.77
31664040--31664085	11	4.4	10	81	10	56	36	8	0	54	1.32
31668461--31668521	14	4.4	14	73	8	52	18	18	8	55	1.66
31668577--31668676	51	1.9	52	87	2	148	41	0	9	50	1.34
31681533--31681561	14	2.0	15	93	6	51	24	0	0	75	0.80
31682275--31682334	20	3.0	20	80	7	68	46	3	5	45	1.41
31682556--31682677	61	2.0	63	81	12	146	29	7	1	61	1.33
31682529--31682788	10	26.0	10	64	21	66	29	5	1	63	1.26
31682532--31682707	19	8.8	19	65	20	67	28	5	2	64	1.27
31682705--31682780	30	2.5	31	77	12	79	31	3	1	63	1.21
31682872--31683059	97	2.0	93	83	8	236	40	7	18	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31683668--31683791	34	3.7	33	81	5	142	39	0	16	44	1.47
31683668--31683792	33	3.8	33	81	5	144	39	0	16	44	1.47
31683882--31684403	125	4.2	126	83	4	633	37	15	16	29	1.91
31683900--31684392	251	2.0	252	85	2	679	38	16	16	28	1.90
31688190--31688361	40	4.3	40	88	2	213	25	27	21	25	1.99
31688192--31688414	40	5.6	39	82	5	207	25	26	21	26	1.99
31688346--31688423	40	1.9	41	82	10	97	26	28	20	24	1.99
31696127--31696298	40	4.3	40	88	2	213	25	27	21	25	1.99
31696129--31696351	40	5.6	39	82	5	207	25	26	21	26	1.99
31696283--31696360	40	1.9	41	82	10	97	26	28	20	24	1.99
31697392--31697512	60	2.0	60	96	0	224	30	23	18	28	1.97
31702498--31702524	14	1.9	14	100	0	54	33	22	14	29	1.94
31702701--31702755	20	2.8	20	80	0	65	52	10	5	30	1.59
31705210--31705241	15	2.1	16	94	5	57	6	21	0	71	1.07
31705266--31705295	15	1.9	16	93	6	53	0	16	3	80	0.85
31706158--31706202	24	1.9	24	86	4	65	8	17	0	73	1.08
31708456--31708521	21	2.9	23	72	21	66	30	16	12	40	1.85
31708455--31708529	24	3.3	23	71	21	68	29	14	14	41	1.86
31722123--31722382	129	2.0	129	96	1	486	25	19	19	36	1.95
31738479--31738521	15	2.7	15	78	7	50	4	20	2	72	1.14
31746353--31746389	18	2.0	19	89	5	58	8	32	0	59	1.27
31746353--31746394	18	2.4	17	84	11	50	7	30	0	61	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31746388--31746462	22	3.5	20	76	12	60	6	26	1	65	1.25
31746374--31746430	22	2.3	24	82	14	64	8	26	0	64	1.22
31746399--31746448	21	2.3	22	83	10	59	8	22	0	70	1.13
31754081--31754130	18	2.5	21	84	9	70	70	0	20	10	1.16
31754057--31754142	30	2.8	30	75	11	84	66	0	25	8	1.19
31754081--31754139	18	3.1	18	78	7	64	72	0	18	8	1.09
31761071--31761140	28	2.6	29	82	13	87	27	10	11	51	1.69
31767767--31767826	28	2.2	28	84	3	77	25	5	16	53	1.63
31772530--31772578	20	2.5	20	81	15	57	24	6	16	53	1.66
31776690--31776731	20	2.1	20	86	0	57	35	16	28	19	1.93
31785610--31786635	47	21.5	47	94	3	1723	30	8	31	29	1.87
31785692--31785807	61	1.9	60	92	3	198	30	11	31	27	1.91
31788869--31789890	40	25.5	40	97	0	1884	22	24	29	23	1.99
31790102--31790210	57	1.9	58	90	1	175	24	19	27	28	1.98
31794898--31795305	41	9.7	41	82	8	439	34	25	17	22	1.96
31794935--31795264	84	3.9	84	99	0	642	35	24	17	21	1.95
31796666--31796756	39	2.3	39	88	0	128	46	7	8	37	1.64
31799718--31799767	17	2.7	19	81	12	50	68	6	4	22	1.29
31803032--31803071	19	2.0	20	85	4	55	17	32	10	40	1.83
31808068--31808290	40	5.6	40	86	3	236	24	21	27	26	1.99
31808143--31808325	79	2.3	80	82	1	226	25	20	27	25	1.99
31809832--31809958	50	2.5	51	77	10	141	43	14	11	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31812136--31812252	39	3.0	39	86	2	155	41	12	9	35	1.76
31820593--31820625	15	2.1	17	88	11	52	33	6	21	39	1.78
31821355--31821385	13	2.4	13	94	0	53	35	6	12	45	1.68
31824365--31824542	27	6.6	27	84	3	205	29	28	15	26	1.96
31824386--31824541	82	1.9	81	88	3	233	29	28	15	26	1.96
31831872--31831906	16	2.2	16	100	0	70	45	31	5	17	1.71
31834121--31834157	17	2.2	17	100	0	74	27	21	10	40	1.86
31837321--31837393	12	6.2	12	73	10	62	71	0	4	24	1.04
31837321--31837393	36	2.1	35	84	2	92	71	0	4	24	1.04
31840934--31841023	42	2.1	42	81	4	108	31	24	17	26	1.97
31841333--31841374	9	4.9	9	85	2	52	30	21	2	45	1.65
31846592--31846663	29	2.5	28	86	11	101	27	15	29	27	1.96
31846622--31846950	175	1.9	174	93	0	568	30	14	24	30	1.95
31851979--31852023	9	5.1	9	91	2	65	28	22	0	48	1.50
31851981--31852023	13	3.2	13	81	15	52	30	20	0	48	1.50
31853743--31853814	27	2.6	27	80	4	72	56	12	5	25	1.57
31857969--31858019	25	2.0	25	100	0	102	25	23	7	43	1.81
31863909--31863940	6	5.2	6	92	7	55	18	0	0	81	0.70
31865823--31865868	20	2.3	20	96	3	85	21	45	21	10	1.82
31882102--31882147	20	2.3	20	92	3	76	13	32	32	21	1.92
31883300--31883473	48	3.6	48	77	6	174	27	25	20	26	1.99
31883812--31883870	30	2.0	28	83	6	73	30	23	5	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31894291--31894434	39	3.6	41	81	13	160	25	22	27	24	2.00
31894371--31894453	40	2.1	39	82	6	96	24	24	30	21	1.99
31906014--31906197	40	4.6	41	81	8	209	26	22	25	26	2.00
31913021--31913177	27	5.9	27	82	3	185	43	20	12	22	1.85
31913065--31913177	53	2.2	52	91	1	181	43	22	9	24	1.83
31914619--31914680	31	2.0	31	90	0	97	27	32	4	35	1.78
31915354--31915386	17	1.9	17	88	11	50	36	3	12	48	1.56
31915756--31915814	28	2.1	27	81	9	66	25	6	5	62	1.41
31916807--31916873	33	2.0	33	100	0	134	41	14	8	34	1.78
31922558--31922582	9	2.8	9	100	0	50	72	12	0	16	1.13
31926513--31926707	99	2.0	99	94	0	345	48	9	12	30	1.72
31926609--31926834	112	2.0	114	87	5	334	45	9	15	29	1.78
31926630--31926861	112	2.0	112	82	7	281	47	9	15	27	1.77
31930347--31930400	16	3.4	16	72	10	56	14	31	1	51	1.53
31931509--31931549	21	1.9	21	85	5	55	58	2	0	39	1.11
31931924--31931984	25	2.4	26	88	2	88	32	3	0	63	1.10
31932886--31932912	7	3.9	7	100	0	54	25	0	14	59	1.36
31933410--31933475	30	2.2	30	83	5	80	28	45	19	6	1.74
31933529--31933571	18	2.4	18	92	0	68	16	27	11	44	1.82
31933955--31934453	116	4.3	116	96	0	892	39	3	9	47	1.53
31936643--31936929	126	2.3	126	91	1	468	28	21	18	31	1.97
31937012--31937041	15	2.0	15	93	0	51	46	36	0	16	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31937017--31937212	96	2.0	97	84	6	256	41	15	1	41	1.57
31937750--31937796	21	2.2	22	92	3	78	19	10	17	53	1.72
31939020--31939208	95	2.0	94	85	5	256	28	19	27	25	1.98
31939016--31939204	50	3.9	50	78	8	194	29	19	26	24	1.98
31953411--31953632	40	5.6	40	87	3	304	29	26	19	24	1.98
31953411--31953599	80	2.4	80	100	0	378	29	28	20	22	1.98
31961668--31961902	40	5.9	40	91	0	355	22	26	23	28	1.99
31962616--31962665	25	2.0	25	96	0	91	44	18	8	30	1.78
31974059--31974097	21	1.9	20	89	5	60	30	7	35	25	1.84
31981183--31981430	50	4.9	50	81	1	289	26	17	25	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172