Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  172  of  172  ( 20562 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56364486--56364903
132
3.2
131
81
3
469
13
26
18
41
1.88
56364684--56365129
198
2.3
199
90
3
643
15
24
20
39
1.91
56364687--56365129
66
6.7
65
67
10
247
15
24
20
39
1.91
56383181--56383249
33
2.1
33
97
0
129
28
1
23
46
1.61
56384593--56384656
31
2.1
31
90
0
101
37
23
14
25
1.92
56398343--56398423
31
2.6
32
84
9
105
71
0
1
27
0.93
56408567--56408689
46
2.6
47
83
6
142
24
30
17
27
1.97
56410262--56410294
7
4.7
7
100
0
66
45
24
0
30
1.53
56419254--56419303
10
5.2
10
80
9
59
0
44
0
56
0.99
56419254--56419299
4
11.5
4
85
0
56
0
45
0
54
0.99
56427697--56427748
20
2.5
20
78
3
59
38
0
3
57
1.17
56432629--56432724
35
2.8
35
90
1
149
29
14
22
33
1.94
56439031--56439071
21
1.9
21
85
5
55
63
14
7
14
1.50
56445048--56445124
30
2.6
30
82
0
91
42
22
7
27
1.80
56448285--56448455
88
1.9
88
84
4
229
29
16
22
30
1.96
56448282--56448445
44
3.7
44
75
6
170
30
17
21
30
1.96
56448285--56448487
88
2.3
88
80
8
209
30
18
21
30
1.97
56449832--56449933
4
25.5
4
74
7
73
20
8
3
66
1.35
56449844--56449905
20
3.3
20
78
17
87
24
8
3
64
1.36
56449832--56449905
36
2.1
36
97
0
139
22
9
2
64
1.36
56449835--56449925
36
2.5
36
89
0
128
20
9
4
64
1.41
56450018--56450043
3
8.7
3
100
0
52
34
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56450151--56450189
4
9.5
4
83
5
51
25
5
2
66
1.25
56450201--56450234
6
5.7
6
96
0
59
17
11
2
67
1.34
56450284--56450392
25
4.4
25
100
0
218
34
11
3
49
1.57
56452002--56452448
46
9.7
46
98
0
824
23
23
14
38
1.92
56452483--56452618
54
2.5
54
100
0
272
31
24
17
26
1.97
56453323--56453371
21
2.3
21
80
13
55
57
4
14
24
1.55
56453559--56453619
27
2.3
27
85
2
79
50
1
11
36
1.48
56454052--56454130
40
2.1
37
90
9
124
62
7
2
27
1.36
56454184--56454217
18
1.9
17
94
5
59
64
5
0
29
1.17
56456493--56456667
57
3.1
56
90
3
273
36
16
15
32
1.90
56456604--56456922
167
1.9
167
86
3
451
37
17
16
28
1.92
56456606--56456864
81
3.1
83
69
11
213
39
15
16
28
1.89
56456627--56456936
86
3.7
85
73
10
260
37
18
16
28
1.92
56456882--56456989
54
2.0
54
94
0
189
40
19
12
26
1.88
56456775--56457218
140
3.1
140
87
5
617
38
19
14
27
1.91
56457077--56457304
87
2.6
88
88
6
334
37
18
16
27
1.93
56469393--56469426
18
1.9
17
94
5
59
64
5
0
29
1.17
56472544--56472596
27
2.0
26
85
3
70
54
1
0
43
1.11
56473135--56473188
25
2.2
25
93
0
90
42
25
5
25
1.77
56473339--56473383
23
2.0
23
82
8
56
48
17
0
33
1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172

The End!