genome.fa.s10.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  61  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19872254--19872506	129	2.0	130	89	2	393	27	17	18	35	1.94
19875574--19875670	28	3.5	28	80	6	108	35	19	20	24	1.96
19875593--19875681	28	3.2	28	79	3	90	34	23	17	23	1.96
19883397--19883513	28	4.3	27	86	7	155	36	22	21	19	1.95
19885759--19885911	27	5.7	27	89	0	216	32	15	15	37	1.89
19885759--19885911	54	2.8	54	89	0	243	32	15	15	37	1.89
19885768--19885938	81	2.1	81	79	4	184	34	16	15	33	1.91
19885903--19885993	27	3.3	27	84	3	128	43	24	16	15	1.86
19885903--19886017	27	4.2	27	82	2	122	44	21	16	17	1.87
19885903--19886017	55	2.1	54	86	1	158	44	21	16	17	1.87
19886361--19886411	18	2.8	19	76	8	61	23	21	17	37	1.94
19895083--19895108	12	2.2	12	100	0	52	15	0	30	53	1.42
19895830--19896000	93	1.8	93	94	0	306	21	22	29	27	1.99
19895834--19896005	46	3.7	46	79	13	208	21	22	28	27	1.99
19898689--19899063	182	2.1	182	85	4	506	25	29	21	23	1.99
19900305--19900455	43	3.5	43	79	2	151	29	15	24	30	1.96
19903624--19903664	17	2.4	17	79	0	55	46	14	14	24	1.82
19910382--19910426	24	1.9	23	86	13	65	28	17	4	48	1.66
19914352--19914400	20	2.5	20	75	0	62	24	28	14	32	1.94
19925489--19925530	22	1.9	22	90	9	68	40	0	7	52	1.29
19925934--19925993	26	2.3	26	82	8	68	48	1	1	48	1.21
19926014--19926049	19	1.9	18	88	5	54	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19927251--19927354	52	2.0	52	98	0	199	36	12	15	35	1.85
19937635--19937673	3	13.0	3	88	0	60	2	28	0	69	1.02
19937884--19937917	2	17.0	2	87	0	50	2	50	0	47	1.16
19938846--19938896	13	3.9	13	78	0	57	39	7	17	35	1.79
19938844--19938909	26	2.5	26	80	9	89	36	6	19	37	1.77
19941230--19941436	53	3.8	53	78	3	216	38	17	23	20	1.93
19943528--19943585	28	2.0	29	87	9	84	15	41	22	20	1.90
19948775--19948808	17	2.0	17	100	0	68	47	5	11	35	1.65
19953823--19953982	26	6.2	26	93	0	275	33	7	23	35	1.83
19955579--19955717	27	5.2	26	83	6	170	17	22	24	35	1.95
19955579--19955717	54	2.6	53	93	2	224	17	22	24	35	1.95
19955579--19955735	27	5.8	27	76	19	150	18	22	22	35	1.95
19957962--19958008	20	2.3	21	82	10	62	34	17	6	42	1.74
19964691--19964776	39	2.2	39	93	0	145	29	9	15	46	1.76
19964793--19964915	50	2.4	50	87	2	183	34	15	13	36	1.87
19968796--19968965	76	2.2	76	84	0	214	22	18	22	35	1.96
19982289--19982374	28	3.0	28	70	14	68	51	9	17	22	1.73
19982274--19982389	59	1.9	59	82	5	144	48	11	16	24	1.78
19983357--19983424	31	2.2	30	78	2	73	33	7	11	47	1.68
19985137--19985178	16	2.6	16	85	7	50	66	2	0	30	1.04
20000497--20000535	5	7.6	5	82	5	51	38	2	17	41	1.64
20001103--20001193	25	3.7	26	71	12	75	23	27	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20006763--20006856	42	2.2	42	86	0	125	35	14	21	28	1.93
20009964--20010001	20	1.9	20	84	10	51	42	13	23	21	1.88
20011897--20012216	46	7.0	46	97	0	570	38	15	23	23	1.92
20014314--20014442	41	3.2	40	83	2	141	18	20	8	52	1.71
20015955--20016086	68	1.9	69	83	7	171	42	7	3	46	1.50
20016998--20017053	21	2.7	21	83	5	69	32	14	28	25	1.94
20017716--20017775	30	2.0	30	96	0	111	33	15	20	31	1.93
20021179--20021223	20	2.3	20	84	3	56	31	17	24	26	1.97
20023575--20023762	18	10.0	18	68	13	101	32	10	14	42	1.80
20023655--20023762	36	3.0	36	83	1	119	36	8	14	40	1.77
20030357--20030532	46	3.8	46	76	12	189	20	20	29	29	1.98
20030353--20030525	93	1.9	93	92	0	292	20	20	30	28	1.98
20033201--20033241	21	2.0	21	95	4	75	26	0	19	53	1.45
20062960--20063325	48	7.6	48	89	0	545	22	25	21	29	1.99
20062960--20063328	96	3.8	96	96	1	643	22	26	21	29	1.99
20067772--20067849	40	2.0	40	87	5	113	35	26	12	24	1.92
20072853--20072891	21	1.9	20	94	5	69	25	0	25	48	1.51
20078859--20078888	13	2.3	13	94	0	51	40	23	6	30	1.80
20079055--20079100	23	2.0	23	95	0	83	39	13	10	36	1.79
20082444--20082611	35	4.8	35	75	5	126	29	18	23	28	1.98
20092433--20092461	12	2.4	12	100	0	58	27	24	13	34	1.93
20094805--20094845	21	2.0	21	85	0	55	14	14	39	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20103509--20103675	46	3.6	47	77	10	148	22	29	19	28	1.98
20108975--20109043	15	4.6	15	83	0	84	11	17	13	57	1.64
20108970--20109057	30	3.0	29	80	9	90	10	15	15	57	1.64
20112023--20112175	63	2.4	63	100	0	306	37	11	15	35	1.83
20115937--20116088	27	5.6	27	92	3	232	30	28	13	27	1.94
20115937--20116113	55	3.2	55	89	0	246	31	29	12	26	1.93
20135476--20135571	42	2.3	43	83	5	124	28	19	23	28	1.99
20135477--20135589	42	2.7	42	78	12	115	25	21	25	27	1.99
20142712--20142802	29	3.2	29	86	6	116	28	30	14	26	1.95
20146832--20146990	43	3.8	42	72	16	139	23	18	27	29	1.98
20146865--20146970	41	2.5	43	80	10	112	25	18	26	29	1.98
20151614--20151791	48	3.7	49	81	8	188	25	19	29	25	1.98
20152386--20152457	36	2.0	36	91	0	117	18	19	6	55	1.64
20163364--20163432	34	2.0	34	94	0	120	53	8	26	11	1.65
20163764--20163939	46	3.8	46	75	14	164	30	28	19	21	1.97
20163773--20163942	93	1.8	93	88	2	261	30	28	19	22	1.98
20165943--20166419	233	2.0	233	99	0	945	39	22	15	22	1.92
20180766--20180839	29	2.6	29	86	4	96	27	16	31	25	1.96
20183073--20183193	39	3.1	39	83	4	109	39	26	18	15	1.90
20183096--20183193	39	2.5	40	86	3	135	38	27	20	13	1.90
20186144--20186224	38	2.1	38	90	0	126	23	19	23	33	1.97
20189663--20189836	40	4.4	40	93	2	280	30	28	18	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20189663--20189836	79	2.2	80	94	1	305	30	28	18	21	1.97
20192901--20193022	43	2.9	42	77	7	129	27	27	14	29	1.95
20200706--20200743	20	2.0	20	89	5	60	39	5	2	52	1.38
20204816--20204846	15	2.1	15	100	0	62	32	25	0	41	1.56
20206114--20206209	28	3.4	28	78	9	97	18	9	1	70	1.19
20206114--20206209	15	6.8	13	68	18	59	18	9	1	70	1.19
20206138--20206206	9	7.3	9	73	12	59	15	10	1	72	1.18
20213168--20213343	46	3.8	46	76	10	187	23	21	26	28	1.99
20213164--20213335	93	1.8	93	89	0	272	23	22	27	27	1.99
20216141--20216424	50	5.6	50	73	5	239	29	26	17	26	1.98
20216191--20216368	51	3.5	51	75	7	191	29	25	19	26	1.98
20216133--20216419	101	2.8	101	86	1	414	29	26	18	26	1.98
20216773--20216819	19	2.3	20	82	10	60	48	14	0	36	1.44
20220758--20220827	28	2.5	28	83	0	86	40	12	22	24	1.89
20225289--20225346	27	2.1	27	81	6	64	41	18	22	17	1.90
20232123--20232236	56	2.0	56	98	0	219	30	12	18	38	1.87
20232212--20232410	100	2.0	99	92	1	326	37	5	13	43	1.66
20235440--20235475	5	7.6	5	87	12	58	83	0	0	16	0.65
20239889--20239913	12	2.1	12	100	0	50	84	0	0	16	0.63
20247381--20247409	4	7.2	4	100	0	58	24	0	0	75	0.80
20250724--20250777	21	2.6	21	80	11	65	20	35	11	33	1.88
20257623--20257799	27	6.5	27	79	3	113	28	31	15	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20257623--20257799	54	3.3	55	80	7	191	28	31	15	24	1.96
20257644--20257799	82	1.9	81	82	3	197	27	30	16	25	1.96
20262110--20262302	40	4.8	40	88	1	271	26	30	20	23	1.98
20266552--20266593	18	2.4	17	81	14	50	19	4	2	73	1.12
20270192--20270216	13	1.9	13	100	0	50	40	24	4	32	1.73
20284997--20285021	13	1.9	13	100	0	50	40	24	4	32	1.73
20286803--20286838	18	2.0	18	94	0	63	30	5	11	52	1.59
20287402--20287471	35	2.0	35	100	0	140	22	20	11	45	1.82
20300313--20300349	4	9.2	4	93	0	65	27	0	24	48	1.51
20303529--20303580	20	2.6	20	96	0	95	15	34	25	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172